Experiment set3S365 for Phocaeicola dorei CL03T12C01

Compare to:

D-Glucose 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS21045 -5.7 -5.6 tryptophan synthase subunit beta compare
ABI39_RS21065 -5.7 -6.9 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS02975 -5.5 -12.2 argininosuccinate synthase compare
ABI39_RS17315 -5.3 -12.4 alpha amylase C-terminal domain-containing protein compare
ABI39_RS00475 -5.3 -6.9 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS02870 -5.1 -7.2 acetylornithine carbamoyltransferase compare
ABI39_RS21060 -5.1 -9.1 anthranilate phosphoribosyltransferase compare
ABI39_RS14230 -5.1 -11.7 alpha-amylase compare
ABI39_RS07095 -4.9 -19.3 argininosuccinate lyase compare
ABI39_RS02980 -4.9 -10.5 N-acetyltransferase compare
ABI39_RS06055 -4.8 -10.8 phosphoribosylamine--glycine ligase compare
ABI39_RS12675 -4.8 -4.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS04685 -4.8 -6.3 acetylglutamate kinase compare
ABI39_RS10260 -4.7 -9.2 adenylosuccinate synthase compare
ABI39_RS07790 -4.6 -8.2 M20 family metallo-hydrolase compare
ABI39_RS11840 -4.4 -6.0 histidinol-phosphate transaminase compare
ABI39_RS10495 -4.4 -7.8 prephenate dehydrogenase compare
ABI39_RS16905 -4.3 -13.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS19935 -4.3 -7.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS10205 -4.2 -5.9 3-isopropylmalate dehydratase small subunit compare
ABI39_RS00405 -4.2 -21.1 phosphoribosylformylglycinamidine synthase compare
ABI39_RS19385 -4.2 -3.9 hypothetical protein compare
ABI39_RS04795 -4.1 -2.8 M28 family peptidase compare
ABI39_RS17420 -4.1 -8.0 serine hydroxymethyltransferase compare
ABI39_RS14225 -4.0 -10.6 glycosyltransferase compare
ABI39_RS11845 -4.0 -9.2 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS04245 -4.0 -2.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS10505 -3.9 -12.7 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS02315 -3.9 -11.3 IMP dehydrogenase compare
ABI39_RS00515 -3.8 -3.9 hypothetical protein compare
ABI39_RS02880 -3.8 -12.6 glutamate 5-kinase compare
ABI39_RS10500 -3.7 -6.6 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS02970 -3.7 -8.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS00205 -3.7 -3.5 phosphoglucosamine mutase compare
ABI39_RS10430 -3.6 -13.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS21050 -3.6 -7.2 anthranilate synthase component I family protein compare
ABI39_RS12735 -3.5 -8.9 ketol-acid reductoisomerase compare
ABI39_RS16910 -3.5 -12.2 3-phosphoglycerate dehydrogenase compare
ABI39_RS21075 -3.5 -8.3 tryptophan synthase subunit alpha compare
ABI39_RS10440 -3.4 -13.1 threonine synthase compare
ABI39_RS10200 -3.4 -14.3 3-isopropylmalate dehydratase large subunit compare
ABI39_RS09845 -3.4 -4.0 (d)CMP kinase compare
ABI39_RS19925 -3.4 -8.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS12720 -3.4 -14.0 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS10215 -3.4 -14.2 3-isopropylmalate dehydrogenase compare
ABI39_RS19950 -3.3 -5.9 diaminopimelate decarboxylase compare
ABI39_RS11830 -3.3 -4.5 ATP phosphoribosyltransferase compare
ABI39_RS12645 -3.3 -18.0 chorismate synthase compare
ABI39_RS07005 -3.3 -10.8 type II 3-dehydroquinate dehydratase compare
ABI39_RS02875 -3.2 -10.0 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS12715 -3.2 -11.9 dihydroxy-acid dehydratase compare
ABI39_RS10435 -3.2 -12.4 cofactor-independent phosphoglycerate mutase compare
ABI39_RS11835 -3.2 -7.3 histidinol dehydrogenase compare
ABI39_RS02960 -3.2 -15.3 pyrroline-5-carboxylate reductase compare
ABI39_RS12955 -3.1 -6.3 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS10640 -3.1 -12.7 serine dehydratase subunit alpha family protein compare
ABI39_RS10510 -3.1 -9.7 prephenate dehydratase compare
ABI39_RS10870 -3.1 -13.4 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS10195 -3.1 -12.6 2-isopropylmalate synthase compare
ABI39_RS10210 -3.1 -11.7 2-isopropylmalate synthase compare
ABI39_RS17950 -3.1 -2.9 Crp/Fnr family transcriptional regulator compare
ABI39_RS17140 -3.0 -2.1 AAA family ATPase compare
ABI39_RS19930 -3.0 -6.2 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS01415 -2.9 -3.9 branched-chain amino acid aminotransferase compare
ABI39_RS04690 -2.9 -12.4 biosynthetic arginine decarboxylase compare
ABI39_RS19920 -2.9 -7.0 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS05450 -2.9 -5.1 redox-regulated ATPase YchF compare
ABI39_RS00770 -2.8 -11.0 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS04885 -2.8 -3.3 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS04695 -2.8 -6.5 shikimate kinase compare
ABI39_RS01300 -2.8 -12.0 NADP-specific glutamate dehydrogenase compare
ABI39_RS07090 -2.7 -2.7 hypothetical protein compare
ABI39_RS09575 -2.7 -3.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS04700 -2.7 -4.4 type I DNA topoisomerase compare
ABI39_RS19945 -2.7 -10.5 aspartate kinase compare
ABI39_RS06250 -2.6 -13.1 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS08035 -2.6 -2.5 adenylosuccinate lyase compare
ABI39_RS02965 -2.6 -9.2 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS05660 -2.6 -10.9 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS02500 -2.6 -8.0 pyridoxine 5'-phosphate synthase compare
ABI39_RS12665 -2.5 -6.4 shikimate dehydrogenase compare
ABI39_RS14220 -2.5 -7.9 glycogen debranching enzyme N-terminal domain-containing protein compare
ABI39_RS02755 -2.4 -2.3 glycosyltransferase compare
ABI39_RS04145 -2.3 -2.2 transcription elongation factor GreA compare
ABI39_RS04860 -2.3 -3.8 HigA family addiction module antidote protein compare
ABI39_RS17160 -2.3 -1.6 VWA domain-containing protein compare
ABI39_RS04505 -2.3 -6.2 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS09195 -2.3 -3.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS05175 -2.2 -6.2 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS06670 -2.2 -11.3 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS17945 -2.2 -11.7 glutamine synthetase III compare
ABI39_RS12565 -2.2 -8.2 hypothetical protein compare
ABI39_RS17170 -2.1 -2.0 protein BatD compare
ABI39_RS16895 -2.1 -3.1 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS04950 -2.1 -3.3 DEAD/DEAH box helicase compare
ABI39_RS08135 -2.0 -2.6 YicC family protein compare
ABI39_RS19985 -2.0 -2.7 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS09285 -2.0 -2.2 hypothetical protein compare
ABI39_RS10650 -2.0 -15.2 AraC family transcriptional regulator compare
ABI39_RS18745 -2.0 -5.7 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS21350 -2.0 -2.7 aspartate--ammonia ligase compare
ABI39_RS11940 -1.9 -11.9 saccharopine dehydrogenase family protein compare
ABI39_RS06675 -1.9 -8.1 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS17320 -1.9 -2.0 YhcH/YjgK/YiaL family protein compare
ABI39_RS09685 -1.9 -2.5 hypothetical protein compare
ABI39_RS12725 -1.8 -5.4 acetolactate synthase small subunit compare
ABI39_RS15360 -1.8 -3.4 Na+/H+ antiporter NhaC family protein compare
ABI39_RS18740 -1.7 -5.5 ATP-binding protein compare
ABI39_RS11405 -1.6 -8.0 hypothetical protein compare
ABI39_RS12560 -1.6 -7.7 GGGtGRT protein compare
ABI39_RS10000 -1.6 -10.2 DUF4435 domain-containing protein compare
ABI39_RS15415 -1.6 -4.4 hypothetical protein compare
ABI39_RS16885 -1.6 -2.6 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS00520 -1.6 -8.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABI39_RS12945 -1.6 -5.3 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABI39_RS02140 -1.6 -1.8 TetR/AcrR family transcriptional regulator compare
ABI39_RS09515 -1.6 -4.2 nucleoside deaminase compare
ABI39_RS11655 -1.6 -1.1 MFS transporter compare
ABI39_RS07420 -1.5 -4.9 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS09230 -1.5 -1.7 hypothetical protein compare
ABI39_RS16875 -1.5 -2.9 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS20405 -1.5 -3.4 GDP-L-fucose synthase compare
ABI39_RS09855 -1.5 -2.5 polyprenyl synthetase family protein compare
ABI39_RS01905 -1.5 -4.0 [FeFe] hydrogenase H-cluster radical SAM maturase HydE compare
ABI39_RS17730 -1.5 -6.1 carboxynorspermidine decarboxylase compare
ABI39_RS09995 -1.5 -4.1 AAA family ATPase compare
ABI39_RS00410 -1.5 -3.7 response regulator compare
ABI39_RS18165 -1.5 -2.2 DUF5024 domain-containing protein compare
ABI39_RS14715 -1.5 -5.3 RidA family protein compare
ABI39_RS21055 -1.5 -4.1 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS18660 -1.5 -1.6 Hsp20/alpha crystallin family protein compare
ABI39_RS14375 -1.4 -1.7 DUF4492 domain-containing protein compare
ABI39_RS20175 -1.4 -2.6 translation elongation factor 4 compare
ABI39_RS11875 -1.4 -5.5 OmpH family outer membrane protein compare
ABI39_RS06060 -1.4 -5.3 S9 family peptidase compare
ABI39_RS14560 -1.4 -1.5 aspartate 1-decarboxylase compare
ABI39_RS15620 -1.4 -9.4 anaerobic ribonucleoside-triphosphate reductase compare
ABI39_RS02470 -1.4 -4.3 ATP-dependent DNA helicase RecG compare
ABI39_RS22305 -1.4 -2.8 DUF3408 domain-containing protein compare
ABI39_RS17150 -1.4 -3.0 hypothetical protein compare
ABI39_RS16095 -1.4 -1.7 helix-turn-helix domain-containing protein compare
ABI39_RS06380 -1.3 -6.0 GH3 auxin-responsive promoter family protein compare
ABI39_RS16310 -1.3 -3.3 conjugative transposon protein TraJ compare
ABI39_RS16315 -1.3 -1.1 conjugative transposon protein TraK compare
ABI39_RS08185 -1.3 -5.2 hemolysin III family protein compare
ABI39_RS17745 -1.2 -1.8 sulfur carrier protein ThiS compare
ABI39_RS15410 -1.2 -4.4 DUF4296 domain-containing protein compare
ABI39_RS15760 -1.2 -1.4 hypothetical protein compare
ABI39_RS01360 -1.2 -5.7 hypothetical protein compare
ABI39_RS02465 -1.2 -1.5 nucleoside-diphosphate kinase compare
ABI39_RS16305 -1.2 -0.9 DUF4141 domain-containing protein compare
ABI39_RS06070 -1.1 -1.8 hypothetical protein compare
ABI39_RS02285 -1.1 -1.8 DNA mismatch repair endonuclease MutL compare
ABI39_RS15975 -1.1 -3.2 hypothetical protein compare
ABI39_RS21190 -1.1 -1.7 dihydrodipicolinate synthase family protein compare
ABI39_RS07500 -1.1 -2.2 hypothetical protein compare
ABI39_RS04280 -1.1 -3.1 DUF4292 domain-containing protein compare
ABI39_RS06165 -1.1 -0.9 GtrA family protein compare
ABI39_RS15950 -1.1 -3.0 hypothetical protein compare
ABI39_RS14465 -1.1 -5.2 hypothetical protein compare
ABI39_RS22955 -1.1 -2.8 hypothetical protein compare
ABI39_RS23050 -1.0 -2.2 hypothetical protein compare
ABI39_RS12770 -1.0 -2.7 hypothetical protein compare
ABI39_RS20410 -1.0 -3.8 GDP-mannose 4,6-dehydratase compare
ABI39_RS02355 -1.0 -3.3 ABC transporter ATP-binding protein compare
ABI39_RS09850 -1.0 -2.8 energy transducer TonB compare
ABI39_RS06065 -1.0 -1.6 RNA methyltransferase compare
ABI39_RS14150 -1.0 -5.6 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABI39_RS06100 -1.0 -6.1 ribonuclease R compare
ABI39_RS10110 -0.9 -6.2 S9 family peptidase compare
ABI39_RS22225 -0.9 -1.3 hypothetical protein compare
ABI39_RS03160 -0.9 -1.2 helix-turn-helix domain-containing protein compare
ABI39_RS16235 -0.9 -1.4 hypothetical protein compare
ABI39_RS14030 -0.9 -2.5 MFS transporter compare
ABI39_RS01325 -0.9 -5.4 phosphoenolpyruvate synthase compare
ABI39_RS03105 -0.9 -1.3 MobC family plasmid mobilization relaxosome protein compare
ABI39_RS16620 -0.9 -0.9 phage integrase SAM-like domain-containing protein compare
ABI39_RS17175 -0.9 -2.8 tetratricopeptide repeat protein compare
ABI39_RS16330 -0.8 -2.2 conjugative transposon protein TraN compare
ABI39_RS06885 -0.8 -1.3 hypothetical protein compare
ABI39_RS04675 -0.8 -1.2 hypothetical protein compare
ABI39_RS16295 -0.8 -1.7 TraG family conjugative transposon ATPase compare
ABI39_RS15990 -0.8 -1.1 hypothetical protein compare
ABI39_RS16230 -0.8 -4.0 relaxase/mobilization nuclease domain-containing protein compare
ABI39_RS19915 -0.8 -3.9 formyltetrahydrofolate deformylase compare
ABI39_RS15265 -0.8 -1.5 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS07510 -0.8 -1.6 hypothetical protein compare
ABI39_RS16320 -0.8 -1.1 DUF3989 domain-containing protein compare
ABI39_RS02985 -0.8 -2.2 arginine repressor compare
ABI39_RS22300 -0.8 -1.1 hypothetical protein compare
ABI39_RS11385 -0.8 -1.8 copper resistance protein NlpE N-terminal domain-containing protein compare
ABI39_RS05280 -0.8 -5.4 S41 family peptidase compare
ABI39_RS02350 -0.8 -3.8 ABC transporter permease compare
ABI39_RS06995 -0.8 -4.5 tetratricopeptide repeat protein compare
ABI39_RS02480 -0.8 -1.3 DJ-1/PfpI family protein compare
ABI39_RS22135 -0.8 -1.8 type II toxin-antitoxin system RelE/ParE family toxin compare
ABI39_RS02125 -0.8 -1.0 hypothetical protein compare
ABI39_RS11660 -0.7 -3.1 galactose mutarotase compare
ABI39_RS17765 -0.7 -2.6 hypothetical protein compare
ABI39_RS12970 -0.7 -3.1 CDP-alcohol phosphatidyltransferase family protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source D-Glucose in Phocaeicola dorei CL03T12C01

For carbon source D-Glucose across organisms