Experiment set3S364 for Phocaeicola dorei CL03T12C01

Compare to:

D-Glucosamine Hydrochloride 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS07790 -5.4 -8.3 M20 family metallo-hydrolase compare
ABI39_RS02980 -5.1 -10.9 N-acetyltransferase compare
ABI39_RS07095 -4.8 -20.3 argininosuccinate lyase compare
ABI39_RS04685 -4.7 -11.3 acetylglutamate kinase compare
ABI39_RS02970 -4.6 -8.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS11840 -4.4 -6.7 histidinol-phosphate transaminase compare
ABI39_RS04795 -4.3 -2.9 M28 family peptidase compare
ABI39_RS02975 -4.3 -9.7 argininosuccinate synthase compare
ABI39_RS19925 -4.3 -8.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS02880 -4.2 -13.9 glutamate 5-kinase compare
ABI39_RS08185 -4.1 -6.2 hemolysin III family protein compare
ABI39_RS10260 -4.1 -12.0 adenylosuccinate synthase compare
ABI39_RS16910 -4.1 -13.1 3-phosphoglycerate dehydrogenase compare
ABI39_RS02870 -4.1 -7.5 acetylornithine carbamoyltransferase compare
ABI39_RS02315 -4.0 -10.4 IMP dehydrogenase compare
ABI39_RS00475 -3.9 -6.7 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS19930 -3.9 -6.7 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS04695 -3.7 -8.5 shikimate kinase compare
ABI39_RS05660 -3.6 -12.5 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS11835 -3.6 -8.1 histidinol dehydrogenase compare
ABI39_RS00205 -3.5 -4.7 phosphoglucosamine mutase compare
ABI39_RS10495 -3.5 -9.3 prephenate dehydrogenase compare
ABI39_RS16905 -3.5 -15.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS02875 -3.4 -11.9 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS11845 -3.4 -9.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS10435 -3.3 -11.2 cofactor-independent phosphoglycerate mutase compare
ABI39_RS06055 -3.3 -9.6 phosphoribosylamine--glycine ligase compare
ABI39_RS10500 -3.3 -5.8 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS10510 -3.3 -9.1 prephenate dehydratase compare
ABI39_RS12665 -3.3 -9.7 shikimate dehydrogenase compare
ABI39_RS14465 -3.3 -9.6 hypothetical protein compare
ABI39_RS07005 -3.3 -10.2 type II 3-dehydroquinate dehydratase compare
ABI39_RS00405 -3.2 -22.0 phosphoribosylformylglycinamidine synthase compare
ABI39_RS18745 -3.1 -6.3 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS13835 -3.1 -3.9 DUF3037 domain-containing protein compare
ABI39_RS10440 -3.1 -9.4 threonine synthase compare
ABI39_RS12735 -3.1 -8.5 ketol-acid reductoisomerase compare
ABI39_RS10430 -3.1 -15.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS11405 -3.1 -11.6 hypothetical protein compare
ABI39_RS17140 -3.0 -2.9 AAA family ATPase compare
ABI39_RS17950 -3.0 -3.5 Crp/Fnr family transcriptional regulator compare
ABI39_RS12645 -3.0 -15.8 chorismate synthase compare
ABI39_RS08035 -3.0 -2.9 adenylosuccinate lyase compare
ABI39_RS02755 -2.9 -2.0 glycosyltransferase compare
ABI39_RS01415 -2.8 -4.2 branched-chain amino acid aminotransferase compare
ABI39_RS10505 -2.8 -9.9 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS17170 -2.8 -1.9 protein BatD compare
ABI39_RS17150 -2.8 -4.1 hypothetical protein compare
ABI39_RS06380 -2.8 -8.9 GH3 auxin-responsive promoter family protein compare
ABI39_RS09670 -2.8 -3.2 cardiolipin synthase compare
ABI39_RS09575 -2.7 -3.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS11830 -2.7 -3.8 ATP phosphoribosyltransferase compare
ABI39_RS21045 -2.7 -8.3 tryptophan synthase subunit beta compare
ABI39_RS10640 -2.6 -9.8 serine dehydratase subunit alpha family protein compare
ABI39_RS21075 -2.6 -7.5 tryptophan synthase subunit alpha compare
ABI39_RS12720 -2.6 -12.9 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS01650 -2.6 -11.6 methylmalonyl-CoA mutase small subunit compare
ABI39_RS07090 -2.5 -1.4 hypothetical protein compare
ABI39_RS12675 -2.5 -5.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS22955 -2.4 -4.8 hypothetical protein compare
ABI39_RS12715 -2.4 -12.0 dihydroxy-acid dehydratase compare
ABI39_RS13180 -2.3 -3.8 FAD:protein FMN transferase compare
ABI39_RS21060 -2.3 -10.4 anthranilate phosphoribosyltransferase compare
ABI39_RS21065 -2.3 -7.4 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS09845 -2.3 -4.0 (d)CMP kinase compare
ABI39_RS12770 -2.2 -4.6 hypothetical protein compare
ABI39_RS13185 -2.2 -1.7 manganese efflux pump compare
ABI39_RS11350 -2.2 -6.2 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS01655 -2.1 -12.6 methylmalonyl-CoA mutase compare
ABI39_RS14030 -2.1 -4.3 MFS transporter compare
ABI39_RS06670 -2.1 -12.0 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS04700 -2.1 -3.5 type I DNA topoisomerase compare
ABI39_RS02960 -2.0 -12.1 pyrroline-5-carboxylate reductase compare
ABI39_RS04245 -2.0 -2.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS04280 -1.9 -4.4 DUF4292 domain-containing protein compare
ABI39_RS19935 -1.9 -7.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS14715 -1.9 -4.4 RidA family protein compare
ABI39_RS10215 -1.9 -9.7 3-isopropylmalate dehydrogenase compare
ABI39_RS06675 -1.9 -7.9 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS10650 -1.9 -13.0 AraC family transcriptional regulator compare
ABI39_RS19950 -1.9 -4.6 diaminopimelate decarboxylase compare
ABI39_RS04970 -1.9 -5.0 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS20080 -1.8 -6.8 electron transport complex subunit RsxA compare
ABI39_RS11655 -1.8 -1.2 MFS transporter compare
ABI39_RS12435 -1.8 -8.2 GNAT family N-acetyltransferase compare
ABI39_RS01360 -1.8 -5.8 hypothetical protein compare
ABI39_RS12415 -1.8 -4.2 biotin/lipoyl-binding protein compare
ABI39_RS10205 -1.8 -6.1 3-isopropylmalate dehydratase small subunit compare
ABI39_RS17420 -1.8 -8.0 serine hydroxymethyltransferase compare
ABI39_RS09855 -1.8 -2.8 polyprenyl synthetase family protein compare
ABI39_RS09195 -1.7 -2.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS16870 -1.7 -3.3 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS05350 -1.7 -4.4 murein L,D-transpeptidase catalytic domain family protein compare
ABI39_RS14480 -1.7 -7.8 ferrous iron transport protein B compare
ABI39_RS04690 -1.6 -5.8 biosynthetic arginine decarboxylase compare
ABI39_RS16885 -1.6 -2.9 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS08305 -1.6 -6.9 DUF4831 family protein compare
ABI39_RS11545 -1.6 -8.1 hypothetical protein compare
ABI39_RS20085 -1.5 -6.5 electron transport complex subunit E compare
ABI39_RS09915 -1.5 -2.6 DUF5056 domain-containing protein compare
ABI39_RS16895 -1.5 -3.2 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS10200 -1.5 -8.7 3-isopropylmalate dehydratase large subunit compare
ABI39_RS04885 -1.5 -3.6 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS09515 -1.5 -3.7 nucleoside deaminase compare
ABI39_RS02470 -1.5 -4.6 ATP-dependent DNA helicase RecG compare
ABI39_RS10110 -1.5 -7.9 S9 family peptidase compare
ABI39_RS02460 -1.5 -3.2 peptidoglycan DD-metalloendopeptidase family protein compare
ABI39_RS17160 -1.4 -2.0 VWA domain-containing protein compare
ABI39_RS20095 -1.4 -6.9 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS12430 -1.4 -1.2 methylmalonyl-CoA epimerase compare
ABI39_RS18910 -1.4 -1.9 preprotein translocase subunit YajC compare
ABI39_RS07000 -1.4 -3.3 site-specific tyrosine recombinase XerD compare
ABI39_RS18330 -1.4 -8.7 PD40 domain-containing protein compare
ABI39_RS01040 -1.4 -2.0 L-rhamnose mutarotase compare
ABI39_RS04930 -1.3 -5.0 helix-turn-helix transcriptional regulator compare
ABI39_RS00410 -1.3 -3.6 response regulator compare
ABI39_RS20100 -1.3 -4.2 electron transport complex subunit RsxC compare
ABI39_RS06620 -1.3 -2.5 HU family DNA-binding protein compare
ABI39_RS12755 -1.3 -2.9 SurA N-terminal domain-containing protein compare
ABI39_RS12150 -1.3 -2.7 hotdog fold thioesterase compare
ABI39_RS20090 -1.3 -4.9 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS17175 -1.3 -3.5 tetratricopeptide repeat protein compare
ABI39_RS09685 -1.3 -1.7 hypothetical protein compare
ABI39_RS10195 -1.3 -7.5 2-isopropylmalate synthase compare
ABI39_RS19920 -1.2 -2.0 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS06995 -1.2 -5.7 tetratricopeptide repeat protein compare
ABI39_RS12235 -1.2 -6.6 DUF4738 domain-containing protein compare
ABI39_RS18390 -1.2 -1.8 DUF3987 domain-containing protein compare
ABI39_RS21050 -1.2 -4.8 anthranilate synthase component I family protein compare
ABI39_RS01300 -1.2 -6.7 NADP-specific glutamate dehydrogenase compare
ABI39_RS21350 -1.1 -2.0 aspartate--ammonia ligase compare
ABI39_RS20105 -1.1 -3.7 Fe-S cluster domain-containing protein compare
ABI39_RS17965 -1.1 -3.0 YegS/Rv2252/BmrU family lipid kinase compare
ABI39_RS20110 -1.1 -1.7 SoxR reducing system RseC family protein compare
ABI39_RS19985 -1.1 -1.9 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS07890 -1.1 -1.5 hypothetical protein compare
ABI39_RS04145 -1.1 -1.2 transcription elongation factor GreA compare
ABI39_RS21365 -1.1 -3.7 HDIG domain-containing protein compare
ABI39_RS01730 -1.1 -5.4 electron transfer flavoprotein subunit alpha/FixB family protein compare
ABI39_RS02350 -1.1 -5.1 ABC transporter permease compare
ABI39_RS12425 -1.1 -6.7 acyl-CoA carboxylase subunit beta compare
ABI39_RS00515 -1.1 -2.9 hypothetical protein compare
ABI39_RS09830 -1.1 -6.6 methylmalonyl Co-A mutase-associated GTPase MeaB compare
ABI39_RS15500 -1.1 -5.3 iron ABC transporter permease compare
ABI39_RS14560 -1.0 -1.8 aspartate 1-decarboxylase compare
ABI39_RS08195 -1.0 -4.0 hypothetical protein compare
ABI39_RS02465 -1.0 -1.8 nucleoside-diphosphate kinase compare
ABI39_RS01735 -1.0 -5.8 acyl-CoA dehydrogenase family protein compare
ABI39_RS11635 -1.0 -3.3 NUDIX hydrolase compare
ABI39_RS16695 -1.0 -7.1 carbon-nitrogen hydrolase compare
ABI39_RS16620 -1.0 -1.1 phage integrase SAM-like domain-containing protein compare
ABI39_RS15265 -1.0 -1.7 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS04200 -1.0 -4.8 Na/Pi cotransporter family protein compare
ABI39_RS10210 -1.0 -5.5 2-isopropylmalate synthase compare
ABI39_RS10870 -1.0 -6.2 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS00770 -1.0 -7.4 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS15410 -1.0 -3.8 DUF4296 domain-containing protein compare
ABI39_RS16875 -1.0 -2.2 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS02480 -1.0 -1.6 DJ-1/PfpI family protein compare
ABI39_RS12420 -1.0 -4.3 OadG family protein compare
ABI39_RS12725 -1.0 -2.9 acetolactate synthase small subunit compare
ABI39_RS22855 -0.9 -1.7 hypothetical protein compare
ABI39_RS15505 -0.9 -4.7 ABC transporter ATP-binding protein compare
ABI39_RS12975 -0.9 -4.3 flippase-like domain-containing protein compare
ABI39_RS11875 -0.9 -4.2 OmpH family outer membrane protein compare
ABI39_RS02355 -0.9 -3.9 ABC transporter ATP-binding protein compare
ABI39_RS17335 -0.9 -5.9 phosphatidylinositol-4-phosphate 5-kinase compare
ABI39_RS02500 -0.9 -4.0 pyridoxine 5'-phosphate synthase compare
ABI39_RS16040 -0.9 -0.9 hypothetical protein compare
ABI39_RS03160 -0.9 -1.2 helix-turn-helix domain-containing protein compare
ABI39_RS17180 -0.9 -4.4 phosphatase PAP2 family protein compare
ABI39_RS11940 -0.9 -5.6 saccharopine dehydrogenase family protein compare
ABI39_RS21500 -0.9 -5.0 N-acetylmuramoyl-L-alanine amidase compare
ABI39_RS15840 -0.9 -2.3 hypothetical protein compare
ABI39_RS12670 -0.9 -2.6 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
ABI39_RS03320 -0.9 -6.0 FecR domain-containing protein compare
ABI39_RS06070 -0.8 -1.6 hypothetical protein compare
ABI39_RS13000 -0.8 -4.3 sigma-54-dependent Fis family transcriptional regulator compare
ABI39_RS00760 -0.8 -1.6 YjgP/YjgQ family permease compare
ABI39_RS19075 -0.8 -1.6 hypothetical protein compare
ABI39_RS12965 -0.8 -4.9 hypothetical protein compare
ABI39_RS12970 -0.8 -3.1 CDP-alcohol phosphatidyltransferase family protein compare
ABI39_RS11710 -0.8 -1.5 RNA polymerase sigma factor compare
ABI39_RS12810 -0.8 -2.1 hypothetical protein compare
ABI39_RS04815 -0.8 -1.3 response regulator transcription factor compare
ABI39_RS11660 -0.8 -3.4 galactose mutarotase compare
ABI39_RS15175 -0.8 -1.8 hypothetical protein compare
ABI39_RS02285 -0.8 -2.5 DNA mismatch repair endonuclease MutL compare
ABI39_RS17730 -0.8 -5.1 carboxynorspermidine decarboxylase compare
ABI39_RS15975 -0.8 -2.8 hypothetical protein compare
ABI39_RS15495 -0.8 -4.4 ABC transporter substrate-binding protein compare
ABI39_RS08205 -0.8 -4.3 diaminopimelate dehydrogenase compare
ABI39_RS00075 -0.8 -3.9 MarR family transcriptional regulator compare
ABI39_RS02290 -0.8 -2.1 hypothetical protein compare
ABI39_RS11385 -0.8 -2.0 copper resistance protein NlpE N-terminal domain-containing protein compare
ABI39_RS16115 -0.8 -3.4 DUF1896 domain-containing protein compare
ABI39_RS11485 -0.8 -2.8 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS14345 -0.8 -5.4 dicarboxylate/amino acid:cation symporter compare
ABI39_RS01725 -0.8 -2.3 electron transfer flavoprotein subunit beta/FixA family protein compare
ABI39_RS15660 -0.8 -4.3 cobyric acid synthase compare


Specific Phenotypes

None in this experiment

For Phocaeicola dorei CL03T12C01 in carbon source experiments

For carbon source D-Glucosamine Hydrochloride across organisms