Experiment set3S360 for Phocaeicola dorei CL03T12C01

Compare to:

D-Fructose 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS08230 -5.4 -9.5 MFS transporter compare
ABI39_RS08235 -5.3 -11.8 carbohydrate kinase compare
ABI39_RS02970 -5.2 -10.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS11835 -5.1 -6.1 histidinol dehydrogenase compare
ABI39_RS08240 -5.0 -13.1 substrate-binding domain-containing protein compare
ABI39_RS21045 -4.8 -7.4 tryptophan synthase subunit beta compare
ABI39_RS11840 -4.8 -5.7 histidinol-phosphate transaminase compare
ABI39_RS10505 -4.8 -13.0 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS02980 -4.7 -8.4 N-acetyltransferase compare
ABI39_RS14230 -4.5 -12.4 alpha-amylase compare
ABI39_RS19935 -4.3 -9.6 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS10495 -4.3 -7.4 prephenate dehydrogenase compare
ABI39_RS06055 -4.3 -8.3 phosphoribosylamine--glycine ligase compare
ABI39_RS17315 -4.3 -13.4 alpha amylase C-terminal domain-containing protein compare
ABI39_RS07095 -4.3 -18.8 argininosuccinate lyase compare
ABI39_RS11830 -4.2 -5.8 ATP phosphoribosyltransferase compare
ABI39_RS07790 -4.2 -7.5 M20 family metallo-hydrolase compare
ABI39_RS04795 -4.2 -2.8 M28 family peptidase compare
ABI39_RS10260 -4.2 -12.8 adenylosuccinate synthase compare
ABI39_RS19925 -4.1 -6.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS02315 -4.1 -11.4 IMP dehydrogenase compare
ABI39_RS14225 -4.0 -10.0 glycosyltransferase compare
ABI39_RS08135 -4.0 -3.4 YicC family protein compare
ABI39_RS16905 -4.0 -12.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS11845 -4.0 -8.8 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS21060 -3.9 -9.9 anthranilate phosphoribosyltransferase compare
ABI39_RS01415 -3.9 -3.8 branched-chain amino acid aminotransferase compare
ABI39_RS02975 -3.9 -10.9 argininosuccinate synthase compare
ABI39_RS17420 -3.9 -8.0 serine hydroxymethyltransferase compare
ABI39_RS09845 -3.8 -3.7 (d)CMP kinase compare
ABI39_RS04685 -3.8 -8.4 acetylglutamate kinase compare
ABI39_RS05450 -3.8 -5.3 redox-regulated ATPase YchF compare
ABI39_RS00475 -3.8 -6.7 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS02870 -3.8 -11.6 acetylornithine carbamoyltransferase compare
ABI39_RS10430 -3.7 -14.9 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS12675 -3.7 -5.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS19950 -3.6 -5.5 diaminopimelate decarboxylase compare
ABI39_RS02875 -3.5 -10.4 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS04695 -3.5 -9.4 shikimate kinase compare
ABI39_RS00405 -3.5 -20.5 phosphoribosylformylglycinamidine synthase compare
ABI39_RS04245 -3.5 -2.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS21350 -3.5 -2.4 aspartate--ammonia ligase compare
ABI39_RS10200 -3.5 -12.6 3-isopropylmalate dehydratase large subunit compare
ABI39_RS19930 -3.4 -5.3 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS10510 -3.4 -9.2 prephenate dehydratase compare
ABI39_RS09575 -3.3 -2.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS21065 -3.3 -5.9 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS02880 -3.3 -11.4 glutamate 5-kinase compare
ABI39_RS10640 -3.2 -12.7 serine dehydratase subunit alpha family protein compare
ABI39_RS12735 -3.2 -8.4 ketol-acid reductoisomerase compare
ABI39_RS21075 -3.2 -4.0 tryptophan synthase subunit alpha compare
ABI39_RS19920 -3.2 -8.8 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS10215 -3.2 -14.7 3-isopropylmalate dehydrogenase compare
ABI39_RS12955 -3.1 -6.3 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS12715 -3.1 -10.7 dihydroxy-acid dehydratase compare
ABI39_RS02960 -3.1 -14.6 pyrroline-5-carboxylate reductase compare
ABI39_RS17320 -3.1 -3.6 YhcH/YjgK/YiaL family protein compare
ABI39_RS10870 -3.0 -9.8 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS08185 -3.0 -6.7 hemolysin III family protein compare
ABI39_RS00205 -3.0 -4.5 phosphoglucosamine mutase compare
ABI39_RS16910 -3.0 -7.8 3-phosphoglycerate dehydrogenase compare
ABI39_RS07005 -2.9 -7.8 type II 3-dehydroquinate dehydratase compare
ABI39_RS10210 -2.9 -12.4 2-isopropylmalate synthase compare
ABI39_RS10440 -2.9 -8.1 threonine synthase compare
ABI39_RS10435 -2.9 -11.9 cofactor-independent phosphoglycerate mutase compare
ABI39_RS10205 -2.8 -7.8 3-isopropylmalate dehydratase small subunit compare
ABI39_RS12720 -2.8 -12.7 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS00770 -2.8 -13.8 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS12645 -2.8 -14.6 chorismate synthase compare
ABI39_RS19945 -2.8 -10.8 aspartate kinase compare
ABI39_RS10195 -2.7 -9.7 2-isopropylmalate synthase compare
ABI39_RS05660 -2.7 -10.1 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS08220 -2.7 -10.1 TonB-dependent receptor compare
ABI39_RS02965 -2.7 -11.9 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS02140 -2.7 -2.9 TetR/AcrR family transcriptional regulator compare
ABI39_RS01300 -2.7 -11.1 NADP-specific glutamate dehydrogenase compare
ABI39_RS04505 -2.6 -8.5 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS00515 -2.6 -2.6 hypothetical protein compare
ABI39_RS17945 -2.6 -11.1 glutamine synthetase III compare
ABI39_RS09855 -2.6 -2.5 polyprenyl synthetase family protein compare
ABI39_RS21050 -2.6 -9.5 anthranilate synthase component I family protein compare
ABI39_RS06250 -2.6 -11.9 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS04860 -2.6 -4.4 HigA family addiction module antidote protein compare
ABI39_RS04690 -2.6 -10.7 biosynthetic arginine decarboxylase compare
ABI39_RS12565 -2.5 -7.9 hypothetical protein compare
ABI39_RS12665 -2.5 -8.5 shikimate dehydrogenase compare
ABI39_RS08035 -2.5 -3.3 adenylosuccinate lyase compare
ABI39_RS14560 -2.4 -3.6 aspartate 1-decarboxylase compare
ABI39_RS12560 -2.4 -9.2 GGGtGRT protein compare
ABI39_RS02500 -2.4 -12.1 pyridoxine 5'-phosphate synthase compare
ABI39_RS17140 -2.4 -2.7 AAA family ATPase compare
ABI39_RS10500 -2.3 -4.0 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS04700 -2.3 -4.2 type I DNA topoisomerase compare
ABI39_RS11405 -2.3 -9.0 hypothetical protein compare
ABI39_RS04885 -2.2 -3.6 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS19985 -2.2 -1.9 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS07090 -2.1 -2.2 hypothetical protein compare
ABI39_RS12725 -2.0 -6.4 acetolactate synthase small subunit compare
ABI39_RS06670 -2.0 -10.7 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS21055 -2.0 -3.6 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS09195 -2.0 -2.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS19385 -1.9 -3.4 hypothetical protein compare
ABI39_RS02755 -1.9 -2.2 glycosyltransferase compare
ABI39_RS17150 -1.9 -3.5 hypothetical protein compare
ABI39_RS10650 -1.8 -12.3 AraC family transcriptional regulator compare
ABI39_RS15360 -1.8 -5.1 Na+/H+ antiporter NhaC family protein compare
ABI39_RS14465 -1.8 -7.8 hypothetical protein compare
ABI39_RS06675 -1.8 -8.4 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS03625 -1.8 -5.3 type I methionyl aminopeptidase compare
ABI39_RS17170 -1.7 -1.9 protein BatD compare
ABI39_RS12945 -1.7 -5.0 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABI39_RS16315 -1.7 -1.3 conjugative transposon protein TraK compare
ABI39_RS11940 -1.6 -9.9 saccharopine dehydrogenase family protein compare
ABI39_RS05175 -1.6 -3.8 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS00520 -1.5 -7.0 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABI39_RS14185 -1.5 -6.9 formate-dependent phosphoribosylglycinamide formyltransferase compare
ABI39_RS23235 -1.5 -1.8 hypothetical protein compare
ABI39_RS07420 -1.5 -4.7 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS04280 -1.5 -4.6 DUF4292 domain-containing protein compare
ABI39_RS19915 -1.5 -7.5 formyltetrahydrofolate deformylase compare
ABI39_RS09515 -1.5 -2.5 nucleoside deaminase compare
ABI39_RS04730 -1.4 -1.7 Lrp/AsnC ligand binding domain-containing protein compare
ABI39_RS17160 -1.4 -1.8 VWA domain-containing protein compare
ABI39_RS14220 -1.4 -4.3 glycogen debranching enzyme N-terminal domain-containing protein compare
ABI39_RS17745 -1.4 -1.9 sulfur carrier protein ThiS compare
ABI39_RS00410 -1.4 -3.5 response regulator compare
ABI39_RS15265 -1.4 -2.3 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS09230 -1.3 -2.1 hypothetical protein compare
ABI39_RS20175 -1.3 -2.5 translation elongation factor 4 compare
ABI39_RS08225 -1.3 -3.3 GH32 C-terminal domain-containing protein compare
ABI39_RS15410 -1.3 -4.5 DUF4296 domain-containing protein compare
ABI39_RS02470 -1.2 -3.8 ATP-dependent DNA helicase RecG compare
ABI39_RS16385 -1.2 -2.6 hypothetical protein compare
ABI39_RS06060 -1.2 -4.1 S9 family peptidase compare
ABI39_RS08175 -1.2 -2.2 anaerobic ribonucleoside-triphosphate reductase activating protein compare
ABI39_RS04950 -1.2 -2.3 DEAD/DEAH box helicase compare
ABI39_RS18740 -1.2 -4.3 ATP-binding protein compare
ABI39_RS11505 -1.2 -1.2 YccF domain-containing protein compare
ABI39_RS06380 -1.1 -5.7 GH3 auxin-responsive promoter family protein compare
ABI39_RS20965 -1.1 -1.4 SPOR domain-containing protein compare
ABI39_RS17950 -1.1 -2.0 Crp/Fnr family transcriptional regulator compare
ABI39_RS10000 -1.1 -7.4 DUF4435 domain-containing protein compare
ABI39_RS22955 -1.1 -3.0 hypothetical protein compare
ABI39_RS15775 -1.1 -1.1 hypothetical protein compare
ABI39_RS02125 -1.1 -1.4 hypothetical protein compare
ABI39_RS01360 -1.1 -4.9 hypothetical protein compare
ABI39_RS09460 -1.1 -1.5 histidine phosphatase family protein compare
ABI39_RS03170 -1.0 -1.7 plasmid mobilization relaxosome protein MobC compare
ABI39_RS13845 -1.0 -0.9 histone H1 compare
ABI39_RS09685 -1.0 -1.9 hypothetical protein compare
ABI39_RS16245 -1.0 -1.4 DUF3408 domain-containing protein compare
ABI39_RS09285 -1.0 -1.0 hypothetical protein compare
ABI39_RS16880 -1.0 -2.1 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS19400 -1.0 -0.9 helix-turn-helix domain-containing protein compare
ABI39_RS11875 -1.0 -2.7 OmpH family outer membrane protein compare
ABI39_RS18745 -1.0 -3.7 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS15415 -1.0 -3.7 hypothetical protein compare
ABI39_RS11000 -1.0 -1.4 hypothetical protein compare
ABI39_RS05280 -1.0 -5.8 S41 family peptidase compare
ABI39_RS04145 -1.0 -1.3 transcription elongation factor GreA compare
ABI39_RS17965 -0.9 -2.2 YegS/Rv2252/BmrU family lipid kinase compare
ABI39_RS12670 -0.9 -2.7 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
ABI39_RS10110 -0.9 -5.7 S9 family peptidase compare
ABI39_RS15620 -0.9 -6.3 anaerobic ribonucleoside-triphosphate reductase compare
ABI39_RS01325 -0.9 -4.5 phosphoenolpyruvate synthase compare
ABI39_RS02350 -0.9 -3.0 ABC transporter permease compare
ABI39_RS15955 -0.9 -2.2 hypothetical protein compare
ABI39_RS06065 -0.9 -1.9 RNA methyltransferase compare
ABI39_RS18330 -0.9 -4.6 PD40 domain-containing protein compare
ABI39_RS09995 -0.9 -4.0 AAA family ATPase compare
ABI39_RS09245 -0.9 -5.3 cardiolipin synthase compare
ABI39_RS14150 -0.9 -5.4 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABI39_RS02200 -0.9 -2.2 tRNA-Val compare
ABI39_RS18220 -0.9 -3.3 3'-5' exonuclease domain-containing protein 2 compare
ABI39_RS14715 -0.9 -2.8 RidA family protein compare
ABI39_RS06940 -0.9 -3.9 LicD family protein compare
ABI39_RS11190 -0.8 -1.6 helix-turn-helix domain-containing protein compare
ABI39_RS14030 -0.8 -2.8 MFS transporter compare
ABI39_RS15975 -0.8 -2.7 hypothetical protein compare
ABI39_RS20715 -0.8 -1.7 tRNA-Thr compare
ABI39_RS08780 -0.8 -2.1 DUF3408 domain-containing protein compare
ABI39_RS22260 -0.8 -1.9 DUF3873 family protein compare
ABI39_RS16285 -0.8 -2.2 hypothetical protein compare
ABI39_RS12805 -0.8 -2.0 hypothetical protein compare
ABI39_RS03830 -0.8 -1.3 ribosome-associated translation inhibitor RaiA compare
ABI39_RS08900 -0.8 -1.0 hypothetical protein compare
ABI39_RS02480 -0.8 -2.6 DJ-1/PfpI family protein compare
ABI39_RS13750 -0.8 -2.1 hypothetical protein compare
ABI39_RS21200 -0.8 -2.7 MFS transporter compare
ABI39_RS12980 -0.8 -2.0 HAD family hydrolase compare
ABI39_RS20915 -0.7 -1.6 50S ribosomal protein L35 compare
ABI39_RS14835 -0.7 -1.2 DNA-binding protein compare
ABI39_RS00760 -0.7 -1.4 YjgP/YjgQ family permease compare
ABI39_RS08180 -0.7 -5.0 anaerobic ribonucleoside triphosphate reductase compare
ABI39_RS22135 -0.7 -1.1 type II toxin-antitoxin system RelE/ParE family toxin compare
ABI39_RS12150 -0.7 -2.0 hotdog fold thioesterase compare
ABI39_RS16340 -0.7 -2.3 DUF3872 domain-containing protein compare
ABI39_RS18165 -0.7 -1.4 DUF5024 domain-containing protein compare
ABI39_RS12970 -0.7 -3.1 CDP-alcohol phosphatidyltransferase family protein compare
ABI39_RS01900 -0.7 -4.7 4Fe-4S dicluster domain-containing protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source D-Fructose in Phocaeicola dorei CL03T12C01

For carbon source D-Fructose across organisms