Experiment set3S359 for Escherichia coli ECOR27

Compare to:

Control_ECOR27

200 most important genes:

  gene name fitness t score description  
NOLOHH_19260 hicB -3.7 -1.9 type II toxin-antitoxin system antitoxin HicB compare
NOLOHH_00445 -3.5 -5.6 peptidyl-arginine deiminase compare
NOLOHH_13055 rseA -3.0 -2.1 anti-sigma-E factor RseA compare
NOLOHH_22605 ybiJ -3.0 -3.3 DUF1471 domain-containing protein compare
NOLOHH_20690 ymgE -3.0 -2.2 UPF0410 protein YmgE compare
NOLOHH_23310 odhB -2.8 -2.7 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
NOLOHH_18120 uidR -2.8 -2.0 DNA-binding transcriptional regulator UidR compare
NOLOHH_24040 ybdJ -2.8 -2.1 Uncharacterized protein YbdJ compare
NOLOHH_11365 rpiA -2.7 -3.7 ribose-5-phosphate isomerase RpiA compare
NOLOHH_06550 xerC -2.6 -2.8 tyrosine recombinase XerC compare
NOLOHH_11425 ubiI -2.6 -2.7 FAD-dependent 2-octaprenylphenol hydroxylase compare
NOLOHH_03300 fkpB -2.5 -1.6 FKBP-type peptidyl-prolyl cis-trans isomerase compare
NOLOHH_24460 -2.5 -1.8 LngX2 compare
NOLOHH_16820 -2.5 -1.8 esterase compare
NOLOHH_13310 hscA -2.4 -3.3 Fe-S protein assembly chaperone HscA compare
NOLOHH_03170 surA -2.3 -4.8 peptidylprolyl isomerase SurA compare
NOLOHH_09695 arcB -2.3 -6.8 aerobic respiration two-component sensor histidine kinase ArcB compare
NOLOHH_20735 fadR -2.2 -2.3 fatty acid metabolism transcriptional regulator FadR compare
NOLOHH_16175 zinT -2.2 -2.1 metal-binding protein ZinT compare
NOLOHH_14780 apbE -2.2 -3.2 FAD:protein FMN transferase ApbE compare
NOLOHH_18215 mdtI -2.2 -1.1 multidrug/spermidine efflux SMR transporter subunit MdtI compare
NOLOHH_20865 bluF -2.1 -1.5 blue light-responsive regulator BluF compare
NOLOHH_23480 pgm -2.1 -4.1 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
NOLOHH_18070 rsxB -2.1 -1.3 electron transport complex subunit RsxB compare
NOLOHH_12805 rnfH -2.1 -3.3 RnfH family protein compare
NOLOHH_04655 epmB -2.1 -2.1 EF-P beta-lysylation protein EpmB compare
NOLOHH_19580 sitD -2.1 -1.9 iron/manganese ABC transporter permease subunit SitD compare
NOLOHH_02825 acnB -2.0 -2.7 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
NOLOHH_01270 clpP -1.9 -3.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
NOLOHH_03190 apaH -1.9 -6.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
NOLOHH_12800 ratA -1.9 -2.0 type II toxin-antitoxin system toxin RatA compare
NOLOHH_20460 galU -1.9 -2.4 UTP--glucose-1-phosphate uridylyltransferase GalU compare
NOLOHH_17365 nudG -1.8 -1.9 CTP pyrophosphohydrolase compare
NOLOHH_13075 lepA -1.8 -4.6 translation elongation factor 4 compare
NOLOHH_02845 aceE -1.8 -2.5 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
NOLOHH_05830 metJ -1.8 -1.7 met regulon transcriptional regulator MetJ compare
NOLOHH_18110 malI -1.8 -2.4 mal regulon transcriptional regulator MalI compare
NOLOHH_18915 yddB -1.8 -2.3 Uncharacterized protein YddB compare
NOLOHH_06300 dsbA -1.8 -4.5 thiol:disulfide interchange protein DsbA compare
NOLOHH_06530 corA -1.8 -4.4 magnesium/cobalt transporter CorA compare
NOLOHH_20195 yciZ -1.8 -2.3 UPF0509 protein YciZ compare
NOLOHH_17025 rlmA -1.7 -1.7 23S rRNA (guanine(745)-N(1))-methyltransferase compare
NOLOHH_16805 -1.7 -1.3 maltose ABC transporter permease compare
NOLOHH_21130 yceD -1.7 -2.9 23S rRNA accumulation protein YceD compare
NOLOHH_17785 sufD -1.7 -1.6 Fe-S cluster assembly protein SufD compare
NOLOHH_16305 fliN -1.6 -1.9 flagellar motor switch protein FliN compare
NOLOHH_02390 gmhB -1.6 -1.9 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
NOLOHH_21480 efeB -1.6 -2.6 iron uptake transporter deferrochelatase/peroxidase subunit compare
NOLOHH_20185 rnb -1.6 -2.4 exoribonuclease II compare
NOLOHH_23255 tolQ -1.6 -1.6 Tol-Pal system protein TolQ compare
NOLOHH_15220 yohO -1.6 -1.6 protein YohO compare
NOLOHH_18060 rsxD -1.6 -3.3 electron transport complex subunit RsxD compare
NOLOHH_23250 tolR -1.6 -2.7 colicin uptake protein TolR compare
NOLOHH_20440 ychT -1.6 -1.2 Protein YchT compare
NOLOHH_13070 rseC -1.5 -3.9 SoxR-reducing system protein RseC compare
NOLOHH_11775 yqeJ -1.5 -1.1 Uncharacterized protein YqeJ compare
NOLOHH_21290 yceI -1.5 -1.6 YceI family protein compare
NOLOHH_18265 -1.5 -1.9 dimethylsulfoxide reductase compare
NOLOHH_15505 parE -1.5 -1.4 type II toxin-antitoxin system RelE/ParE family toxin compare
NOLOHH_18660 dgcZ -1.5 -1.8 diguanylate cyclase DgcZ compare
NOLOHH_02180 yncI -1.5 -1.5 ISAs1 family transposase compare
NOLOHH_09835 obgE -1.4 -1.3 GTPase ObgE compare
NOLOHH_07575 rfaF -1.4 -1.9 ADP-heptose--LPS heptosyltransferase RfaF compare
NOLOHH_06920 mnmG -1.4 -5.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
NOLOHH_06250 hemN -1.4 -5.8 oxygen-independent coproporphyrinogen III oxidase compare
NOLOHH_20380 yciI -1.4 -0.9 YciI family protein compare
NOLOHH_17630 btuD -1.4 -1.8 vitamin B12 ABC transporter ATP-binding protein BtuD compare
NOLOHH_14505 nuoK -1.4 -2.4 NADH-quinone oxidoreductase subunit NuoK compare
NOLOHH_21845 zapC -1.4 -2.7 cell division protein ZapC compare
NOLOHH_19320 ydcH -1.4 -1.2 Uncharacterized protein YdcH compare
NOLOHH_20670 dhaL -1.4 -1.2 dihydroxyacetone kinase subunit DhaL compare
NOLOHH_19280 sutR -1.3 -1.3 DNA-binding transcriptional regulator SutR compare
NOLOHH_05695 sthA -1.3 -6.1 Si-specific NAD(P)(+) transhydrogenase compare
NOLOHH_00620 -1.3 -1.0 Orf33, orf151, orf56, orf96, rus, orf45, orf8, orf127, and nmpC genes compare
NOLOHH_18325 -1.3 -1.5 DNA-binding protein compare
NOLOHH_21500 -1.3 -1.4 hypothetical protein compare
NOLOHH_17835 -1.3 -1.3 Ferredoxin compare
NOLOHH_11360 yqfE -1.3 -1.6 Putative protein YqfE compare
NOLOHH_08775 -1.3 -4.6 NfuA family Fe-S biogenesis protein compare
NOLOHH_19455 paaC -1.3 -2.0 3-hydroxyacyl-CoA dehydrogenase PaaC compare
NOLOHH_24760 trbA -1.3 -1.3 conjugal transfer protein TrbA compare
NOLOHH_19160 rhsA -1.3 -2.6 Uncharacterized conserved protein RhaS, contains 28 RHS repeats compare
NOLOHH_01170 ybaA -1.2 -0.9 Uncharacterized protein YbaA compare
NOLOHH_24185 tfa -1.2 -2.2 Tail fiber assembly protein compare
NOLOHH_24475 -1.2 -1.0 pilus assembly protein compare
NOLOHH_10610 tolC -1.2 -1.9 outer membrane channel protein TolC compare
NOLOHH_18650 ydeJ -1.2 -1.9 2-oxo-tetronate isomerase compare
NOLOHH_19570 sitB -1.2 -1.9 iron/manganese ABC transporter ATP-binding protein SitB compare
NOLOHH_15490 yegR -1.2 -1.1 Uncharacterized protein YegR compare
NOLOHH_18315 rspB -1.2 -1.4 Zn-dependent oxidoreductase compare
NOLOHH_19045 yddM -1.2 -0.6 HigA family addiction module antitoxin compare
NOLOHH_00385 -1.2 -1.6 hypothetical protein compare
NOLOHH_14460 nuoA -1.2 -2.5 NADH-quinone oxidoreductase subunit NuoA compare
NOLOHH_23235 pal -1.2 -3.2 peptidoglycan-associated lipoprotein Pal compare
NOLOHH_17135 yeaW -1.2 -2.2 carnitine monooxygenase subunit YeaW compare
NOLOHH_20750 umuC -1.2 -1.9 DNA polymerase V catalytic protein compare
NOLOHH_14340 ubiX -1.2 -2.0 flavin prenyltransferase UbiX compare
NOLOHH_00405 hipB -1.2 -0.9 XRE family transcriptional regulator compare
NOLOHH_07555 rfaJ -1.2 -2.9 glucosyltransferase compare
NOLOHH_18155 fumC -1.2 -0.8 class II fumarate hydratase compare
NOLOHH_07540 rfaP -1.1 -3.3 lipopolysaccharide core heptose(I) kinase RfaP compare
NOLOHH_06385 fre -1.1 -6.6 NAD(P)H-flavin reductase compare
NOLOHH_17270 yeaC -1.1 -1.3 Uncharacterized protein YeaC compare
NOLOHH_12770 -1.1 -1.6 ATP-binding protein compare
NOLOHH_14515 nuoM -1.1 -3.4 NADH-quinone oxidoreductase subunit M compare
NOLOHH_18050 rsxE -1.1 -1.8 electron transport complex subunit RsxE compare
NOLOHH_19090 narH -1.1 -2.3 nitrate reductase subunit beta compare
NOLOHH_14470 nuoC -1.1 -3.9 NADH-quinone oxidoreductase subunit C/D compare
NOLOHH_17095 yoaB -1.1 -2.1 RutC family protein YoaB compare
NOLOHH_04085 rraB -1.1 -3.4 ribonuclease E inhibitor RraB compare
NOLOHH_20080 pspD -1.1 -1.5 phage shock protein PspD compare
NOLOHH_18965 ddpB -1.1 -1.6 putative D,D-dipeptide transport system permease protein DdpB compare
NOLOHH_21490 efeU -1.1 -1.3 Ferrous iron permease EfeU compare
NOLOHH_14490 nuoH -1.1 -2.6 NADH-quinone oxidoreductase subunit NuoH compare
NOLOHH_14420 yfbV -1.1 -1.7 UPF0208 membrane protein YfbV compare
NOLOHH_09730 ptsN -1.1 -1.7 PTS IIA-like nitrogen regulatory protein PtsN compare
NOLOHH_20455 hns -1.0 -1.7 DNA-binding transcriptional regulator H-NS compare
NOLOHH_11495 xerD -1.0 -1.7 site-specific tyrosine recombinase XerD compare
NOLOHH_19635 -1.0 -1.1 hypothetical protein compare
NOLOHH_23510 fur -1.0 -1.1 ferric iron uptake transcriptional regulator compare
NOLOHH_14480 nuoF -1.0 -4.1 NADH-quinone oxidoreductase subunit NuoF compare
NOLOHH_14300 usg -1.0 -2.5 aspartate-semialdehyde dehydrogenase compare
NOLOHH_24755 -1.0 -0.8 toxin ArtA compare
NOLOHH_23865 -1.0 -1.3 hypothetical protein compare
NOLOHH_07125 -1.0 -1.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
NOLOHH_04505 hflC -1.0 -1.7 protease modulator HflC compare
NOLOHH_05225 dgkA -1.0 -2.2 diacylglycerol kinase compare
NOLOHH_15520 baeR -1.0 -1.4 two-component system response regulator BaeR compare
NOLOHH_16550 motA -1.0 -1.7 flagellar motor stator protein MotA compare
NOLOHH_05490 hupA -1.0 -1.1 DNA-binding protein HU-alpha compare
NOLOHH_18220 ydgD -1.0 -0.8 Uncharacterized serine protease YdgD compare
NOLOHH_00170 -1.0 -1.3 hypothetical protein compare
NOLOHH_19100 narI -1.0 -1.2 respiratory nitrate reductase subunit gamma compare
NOLOHH_08720 glpD -1.0 -3.8 glycerol-3-phosphate dehydrogenase compare
NOLOHH_23055 -1.0 -2.0 DUF550 domain-containing protein compare
NOLOHH_01245 ppiD -1.0 -1.3 peptidylprolyl isomerase compare
NOLOHH_23245 tolA -1.0 -2.5 cell envelope integrity protein TolA compare
NOLOHH_18980 ddpF -1.0 -1.6 putative D,D-dipeptide transport ATP-binding protein DdpF compare
NOLOHH_19435 paaX -1.0 -1.3 phenylacetic acid degradation operon negative regulatory protein PaaX compare
NOLOHH_14520 nuoN -1.0 -2.3 NADH-quinone oxidoreductase subunit NuoN compare
NOLOHH_09610 zapG -0.9 -3.0 Z-ring associated protein ZapG compare
NOLOHH_18755 yneJ -0.9 -1.3 Uncharacterized HTH-type transcriptional regulator YneJ compare
NOLOHH_07545 waaO -0.9 -2.6 lipopolysaccharide 3-alpha-galactosyltransferase compare
NOLOHH_24815 trbG -0.9 -0.8 conjugal transfer protein TrbG compare
NOLOHH_17055 -0.9 -0.9 Cytoplasmic protein compare
NOLOHH_11230 tkt -0.9 -1.7 transketolase compare
NOLOHH_23035 -0.9 -1.6 DUF5405 domain-containing protein compare
NOLOHH_20915 phoP -0.9 -1.0 two-component system response regulator PhoP compare
NOLOHH_14160 Arg_trna -0.9 -1.7 tRNA-Arg(cct) compare
NOLOHH_16015 pduF -0.9 -1.0 propanediol diffusion facilitator PduF compare
NOLOHH_17180 yoaJ -0.9 -1.0 protein YoaJ compare
NOLOHH_20500 narI -0.9 -1.1 respiratory nitrate reductase subunit gamma compare
NOLOHH_14595 arnT -0.9 -1.5 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
NOLOHH_06915 mioC -0.9 -3.7 FMN-binding protein MioC compare
NOLOHH_17140 yeaV -0.9 -1.6 BCCT family transporter YeaV compare
NOLOHH_05250 -0.9 -0.8 Putative type III effector protein compare
NOLOHH_09845 greA -0.9 -1.1 transcription elongation factor GreA compare
NOLOHH_21390 cgsG -0.9 -2.8 curli production assembly/transport protein CsgG compare
NOLOHH_17305 ydjF -0.9 -1.3 Uncharacterized HTH-type transcriptional regulator YdjF compare
NOLOHH_17975 sodC -0.9 -0.9 superoxide dismutase [Cu-Zn] SodC compare
NOLOHH_19350 mokB -0.9 -1.0 IS3 family transposase compare
NOLOHH_07530 rfaQ -0.9 -4.9 lipopolysaccharide core heptosyltransferase RfaQ compare
NOLOHH_13385 yfgM -0.9 -2.4 ancillary SecYEG translocon subunit YfgM compare
NOLOHH_17790 sufS -0.8 -1.5 cysteine desulfurase SufS compare
NOLOHH_19000 -0.8 -1.4 succinyl-CoA--3-ketoacid-CoA transferase compare
NOLOHH_01255 lon_P403L -0.8 -4.1 Lon protease compare
NOLOHH_01935 rclC -0.8 -0.9 reactive chlorine species resistance protein RclC compare
NOLOHH_18295 speG -0.8 -1.1 spermidine N1-acetyltransferase compare
NOLOHH_17125 rnd -0.8 -1.5 ribonuclease D compare
NOLOHH_17665 ppsA -0.8 -1.9 phosphoenolpyruvate synthase compare
NOLOHH_09940 pnp -0.8 -4.3 polyribonucleotide nucleotidyltransferase compare
NOLOHH_23995 fes -0.8 -2.5 enterobactin/ferric enterobactin esterase compare
NOLOHH_19035 maeA -0.8 -2.4 malate dehydrogenase compare
NOLOHH_06675 wzxE -0.8 -2.5 lipid III flippase WzxE compare
NOLOHH_24465 -0.8 -1.7 Longus pilus structural subunit compare
NOLOHH_06590 cyaA -0.8 -3.7 class I adenylate cyclase compare
NOLOHH_21940 aspC -0.8 -1.1 aspartate transaminase compare
NOLOHH_16505 ftnB -0.8 -0.9 non-heme ferritin-like protein compare
NOLOHH_07535 rfaG -0.8 -2.5 Lipopolysaccharide core biosynthesis protein RfaG compare
NOLOHH_21150 rne -0.8 -3.7 ribonuclease E compare
NOLOHH_13865 crr -0.8 -0.9 PTS glucose transporter subunit IIA compare
NOLOHH_21880 elfD -0.8 -0.8 putative fimbrial chaperone protein ElfD compare
NOLOHH_04005 Leu_trna -0.8 -1.2 tRNA-Leu(caa) compare
NOLOHH_17670 fadK -0.8 -1.0 medium-chain fatty-acid--CoA ligase compare
NOLOHH_18935 digH -0.8 -1.1 Glycosyl hydrolase DigH compare
NOLOHH_21815 pqiC -0.8 -1.2 membrane integrity-associated transporter subunit PqiC compare
NOLOHH_15455 gatZ -0.8 -1.3 tagatose-bisphosphate aldolase subunit GatZ compare
NOLOHH_19040 adhP -0.8 -1.1 alcohol dehydrogenase AdhP compare
NOLOHH_16335 fliH -0.8 -1.1 flagellar assembly protein FliH compare
NOLOHH_17950 -0.8 -0.9 Lactoylglutathione lyase compare
NOLOHH_22145 lrp -0.8 -3.6 leucine-responsive transcriptional regulator Lrp compare
NOLOHH_13585 -0.8 -1.3 hypothetical protein compare
NOLOHH_20410 oppC -0.8 -1.7 oligopeptide ABC transporter permease OppC compare
NOLOHH_17705 ydiO -0.8 -1.3 acyl-CoA dehydrogenase compare
NOLOHH_01905 -0.8 -1.6 Uncharacterized protein YkgH compare
NOLOHH_05005 ytcA -0.8 -1.4 Uncharacterized protein YtcA compare
NOLOHH_05230 plsB -0.8 -0.9 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
NOLOHH_17275 ydjL -0.7 -1.2 Uncharacterized zinc-type alcohol dehydrogenase-like protein YdjL compare
NOLOHH_19705 -0.7 -2.0 ParB-like nuclease compare
NOLOHH_18035 dtpA -0.7 -1.9 dipeptide/tripeptide permease DtpA compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECOR27 in no phage control experiments

For no phage control No phage across organisms