Experiment set3S358 for Phocaeicola dorei CL03T12C01

Compare to:

Locust bean gum; autoclaved 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS09685 -4.5 -2.6 hypothetical protein compare
ABI39_RS09915 -4.3 -2.4 DUF5056 domain-containing protein compare
ABI39_RS12415 -4.3 -3.1 biotin/lipoyl-binding protein compare
ABI39_RS01415 -4.2 -2.9 branched-chain amino acid aminotransferase compare
ABI39_RS09845 -4.1 -2.8 (d)CMP kinase compare
ABI39_RS12430 -4.0 -1.2 methylmalonyl-CoA epimerase compare
ABI39_RS12425 -4.0 -7.6 acyl-CoA carboxylase subunit beta compare
ABI39_RS08240 -3.5 -8.2 substrate-binding domain-containing protein compare
ABI39_RS22955 -3.4 -3.1 hypothetical protein compare
ABI39_RS04695 -3.4 -4.6 shikimate kinase compare
ABI39_RS17150 -3.4 -2.3 hypothetical protein compare
ABI39_RS08220 -3.3 -9.8 TonB-dependent receptor compare
ABI39_RS09575 -3.2 -2.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS13180 -3.1 -3.0 FAD:protein FMN transferase compare
ABI39_RS08225 -3.1 -8.4 GH32 C-terminal domain-containing protein compare
ABI39_RS20080 -3.0 -3.1 electron transport complex subunit RsxA compare
ABI39_RS11485 -3.0 -3.7 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS12770 -3.0 -3.2 hypothetical protein compare
ABI39_RS16870 -3.0 -4.0 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS18745 -2.9 -6.7 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS00205 -2.9 -4.8 phosphoglucosamine mutase compare
ABI39_RS03170 -2.9 -1.7 plasmid mobilization relaxosome protein MobC compare
ABI39_RS19950 -2.9 -5.1 diaminopimelate decarboxylase compare
ABI39_RS17140 -2.9 -2.8 AAA family ATPase compare
ABI39_RS04145 -2.9 -1.8 transcription elongation factor GreA compare
ABI39_RS00410 -2.9 -4.3 response regulator compare
ABI39_RS19925 -2.8 -6.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS21045 -2.7 -4.0 tryptophan synthase subunit beta compare
ABI39_RS17170 -2.7 -1.8 protein BatD compare
ABI39_RS02755 -2.6 -1.8 glycosyltransferase compare
ABI39_RS14465 -2.6 -6.1 hypothetical protein compare
ABI39_RS02470 -2.6 -4.6 ATP-dependent DNA helicase RecG compare
ABI39_RS06925 -2.5 -6.2 glycosyltransferase compare
ABI39_RS06380 -2.5 -4.1 GH3 auxin-responsive promoter family protein compare
ABI39_RS14030 -2.5 -3.0 MFS transporter compare
ABI39_RS12420 -2.5 -4.1 OadG family protein compare
ABI39_RS10440 -2.5 -4.0 threonine synthase compare
ABI39_RS10205 -2.5 -2.8 3-isopropylmalate dehydratase small subunit compare
ABI39_RS21060 -2.5 -6.6 anthranilate phosphoribosyltransferase compare
ABI39_RS08785 -2.4 -1.2 DUF3408 domain-containing protein compare
ABI39_RS20070 -2.4 -5.7 UDP-glucose 4-epimerase GalE compare
ABI39_RS12720 -2.4 -8.2 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS08135 -2.4 -1.4 YicC family protein compare
ABI39_RS10435 -2.4 -6.5 cofactor-independent phosphoglycerate mutase compare
ABI39_RS17950 -2.4 -2.7 Crp/Fnr family transcriptional regulator compare
ABI39_RS12715 -2.4 -6.1 dihydroxy-acid dehydratase compare
ABI39_RS15500 -2.3 -3.6 iron ABC transporter permease compare
ABI39_RS01360 -2.3 -5.0 hypothetical protein compare
ABI39_RS06010 -2.3 -4.1 polysaccharide deacetylase family protein compare
ABI39_RS11405 -2.3 -7.8 hypothetical protein compare
ABI39_RS06165 -2.3 -0.9 GtrA family protein compare
ABI39_RS07005 -2.3 -5.6 type II 3-dehydroquinate dehydratase compare
ABI39_RS02060 -2.3 -6.3 translocation/assembly module TamB domain-containing protein compare
ABI39_RS16875 -2.2 -3.5 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS16905 -2.2 -7.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS12735 -2.2 -4.5 ketol-acid reductoisomerase compare
ABI39_RS10260 -2.2 -7.1 adenylosuccinate synthase compare
ABI39_RS12645 -2.2 -9.5 chorismate synthase compare
ABI39_RS18300 -2.1 -5.2 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
ABI39_RS21065 -2.1 -4.4 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS04860 -2.0 -4.2 HigA family addiction module antidote protein compare
ABI39_RS11840 -2.0 -2.8 histidinol-phosphate transaminase compare
ABI39_RS15610 -2.0 -1.3 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS06920 -2.0 -4.2 glycosyltransferase compare
ABI39_RS06935 -2.0 -4.7 hemolysin activation protein compare
ABI39_RS10495 -2.0 -7.0 prephenate dehydrogenase compare
ABI39_RS12675 -2.0 -2.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS16895 -2.0 -2.8 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS15410 -2.0 -4.3 DUF4296 domain-containing protein compare
ABI39_RS10510 -1.9 -4.9 prephenate dehydratase compare
ABI39_RS21075 -1.9 -3.3 tryptophan synthase subunit alpha compare
ABI39_RS20085 -1.9 -4.4 electron transport complex subunit E compare
ABI39_RS17205 -1.9 -2.9 ATP-dependent Clp protease ATP-binding subunit compare
ABI39_RS10195 -1.9 -7.4 2-isopropylmalate synthase compare
ABI39_RS10500 -1.9 -2.9 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS11835 -1.9 -2.6 histidinol dehydrogenase compare
ABI39_RS10200 -1.8 -5.9 3-isopropylmalate dehydratase large subunit compare
ABI39_RS16880 -1.8 -2.6 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS10640 -1.8 -5.4 serine dehydratase subunit alpha family protein compare
ABI39_RS12755 -1.8 -3.1 SurA N-terminal domain-containing protein compare
ABI39_RS10430 -1.8 -7.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS04885 -1.8 -3.3 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS17175 -1.8 -3.5 tetratricopeptide repeat protein compare
ABI39_RS20095 -1.8 -4.8 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS03885 -1.8 -3.6 adenosine kinase compare
ABI39_RS23075 -1.7 -3.1 hypothetical protein compare
ABI39_RS13835 -1.7 -2.1 DUF3037 domain-containing protein compare
ABI39_RS15495 -1.7 -5.4 ABC transporter substrate-binding protein compare
ABI39_RS02290 -1.7 -2.3 hypothetical protein compare
ABI39_RS21350 -1.7 -2.1 aspartate--ammonia ligase compare
ABI39_RS11845 -1.7 -4.7 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS12665 -1.6 -3.9 shikimate dehydrogenase compare
ABI39_RS17160 -1.6 -2.3 VWA domain-containing protein compare
ABI39_RS20090 -1.6 -3.8 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS08305 -1.6 -3.1 DUF4831 family protein compare
ABI39_RS10505 -1.6 -5.6 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS10215 -1.6 -7.6 3-isopropylmalate dehydrogenase compare
ABI39_RS16910 -1.6 -5.5 3-phosphoglycerate dehydrogenase compare
ABI39_RS09770 -1.5 -3.6 DUF349 domain-containing protein compare
ABI39_RS15670 -1.5 -4.3 cobalamin biosynthesis protein CobD compare
ABI39_RS09245 -1.5 -6.4 cardiolipin synthase compare
ABI39_RS07890 -1.5 -1.2 hypothetical protein compare
ABI39_RS23125 -1.5 -1.3 hypothetical protein compare
ABI39_RS06995 -1.5 -3.5 tetratricopeptide repeat protein compare
ABI39_RS18330 -1.5 -4.5 PD40 domain-containing protein compare
ABI39_RS09830 -1.5 -3.6 methylmalonyl Co-A mutase-associated GTPase MeaB compare
ABI39_RS06940 -1.5 -2.8 LicD family protein compare
ABI39_RS10110 -1.5 -5.2 S9 family peptidase compare
ABI39_RS20100 -1.5 -3.9 electron transport complex subunit RsxC compare
ABI39_RS19930 -1.5 -3.0 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS18025 -1.5 -1.3 LytTR family transcriptional regulator compare
ABI39_RS11830 -1.4 -2.1 ATP phosphoribosyltransferase compare
ABI39_RS03340 -1.4 -1.7 ATP-dependent Clp protease adaptor ClpS compare
ABI39_RS11785 -1.4 -2.8 TolC family protein compare
ABI39_RS22100 -1.4 -1.4 hypothetical protein compare
ABI39_RS05660 -1.4 -3.8 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS10210 -1.4 -4.7 2-isopropylmalate synthase compare
ABI39_RS02315 -1.4 -3.9 IMP dehydrogenase compare
ABI39_RS02960 -1.4 -5.6 pyrroline-5-carboxylate reductase compare
ABI39_RS22855 -1.3 -1.7 hypothetical protein compare
ABI39_RS06055 -1.3 -3.9 phosphoribosylamine--glycine ligase compare
ABI39_RS11490 -1.3 -1.0 hypothetical protein compare
ABI39_RS00475 -1.3 -3.6 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS08035 -1.3 -2.2 adenylosuccinate lyase compare
ABI39_RS11635 -1.3 -3.9 NUDIX hydrolase compare
ABI39_RS15415 -1.3 -2.6 hypothetical protein compare
ABI39_RS17420 -1.3 -4.2 serine hydroxymethyltransferase compare
ABI39_RS04970 -1.3 -2.8 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS20965 -1.3 -1.6 SPOR domain-containing protein compare
ABI39_RS18165 -1.3 -1.5 DUF5024 domain-containing protein compare
ABI39_RS15265 -1.3 -1.9 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS20175 -1.3 -2.0 translation elongation factor 4 compare
ABI39_RS12670 -1.3 -2.5 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
ABI39_RS10870 -1.3 -5.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS02055 -1.3 -3.3 BamA/TamA family outer membrane protein compare
ABI39_RS04280 -1.3 -3.4 DUF4292 domain-containing protein compare
ABI39_RS20105 -1.2 -2.2 Fe-S cluster domain-containing protein compare
ABI39_RS15660 -1.2 -4.3 cobyric acid synthase compare
ABI39_RS04795 -1.2 -0.9 M28 family peptidase compare
ABI39_RS15525 -1.2 -2.9 precorrin-3B C(17)-methyltransferase compare
ABI39_RS04950 -1.2 -1.8 DEAD/DEAH box helicase compare
ABI39_RS19385 -1.2 -1.5 hypothetical protein compare
ABI39_RS00515 -1.2 -2.0 hypothetical protein compare
ABI39_RS04930 -1.2 -3.9 helix-turn-helix transcriptional regulator compare
ABI39_RS16305 -1.2 -0.7 DUF4141 domain-containing protein compare
ABI39_RS05655 -1.2 -1.9 hypothetical protein compare
ABI39_RS15665 -1.2 -3.1 pyridoxal phosphate-dependent class II aminotransferase compare
ABI39_RS09195 -1.1 -1.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS21050 -1.1 -2.9 anthranilate synthase component I family protein compare
ABI39_RS11860 -1.1 -1.2 NADH peroxidase compare
ABI39_RS11730 -1.1 -3.9 glucosaminidase domain-containing protein compare
ABI39_RS20410 -1.1 -2.4 GDP-mannose 4,6-dehydratase compare
ABI39_RS16450 -1.1 -3.2 adenosylcobinamide-GDP ribazoletransferase compare
ABI39_RS10085 -1.1 -2.5 enoyl-ACP reductase compare
ABI39_RS14480 -1.1 -4.2 ferrous iron transport protein B compare
ABI39_RS11505 -1.1 -0.8 YccF domain-containing protein compare
ABI39_RS16460 -1.1 -3.5 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
ABI39_RS14285 -1.1 -2.2 hypothetical protein compare
ABI39_RS19805 -1.1 -2.0 hypothetical protein compare
ABI39_RS22750 -1.1 -1.1 hypothetical protein compare
ABI39_RS15650 -1.1 -4.0 cobyrinate a,c-diamide synthase compare
ABI39_RS19920 -1.1 -2.8 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS16455 -1.1 -4.2 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
ABI39_RS16295 -1.1 -1.8 TraG family conjugative transposon ATPase compare
ABI39_RS14560 -1.1 -1.4 aspartate 1-decarboxylase compare
ABI39_RS18390 -1.1 -1.2 DUF3987 domain-containing protein compare
ABI39_RS01650 -1.1 -3.5 methylmalonyl-CoA mutase small subunit compare
ABI39_RS15505 -1.1 -2.9 ABC transporter ATP-binding protein compare
ABI39_RS15865 -1.1 -3.3 hypothetical protein compare
ABI39_RS02870 -1.1 -3.4 acetylornithine carbamoyltransferase compare
ABI39_RS19270 -1.1 -2.5 flavodoxin compare
ABI39_RS18320 -1.1 -1.0 hypothetical protein compare
ABI39_RS09855 -1.0 -1.6 polyprenyl synthetase family protein compare
ABI39_RS00405 -1.0 -6.3 phosphoribosylformylglycinamidine synthase compare
ABI39_RS01655 -1.0 -4.4 methylmalonyl-CoA mutase compare
ABI39_RS03070 -1.0 -2.0 helix-turn-helix domain-containing protein compare
ABI39_RS09825 -1.0 -2.5 DUF1573 domain-containing protein compare
ABI39_RS19945 -1.0 -5.1 aspartate kinase compare
ABI39_RS10650 -1.0 -6.0 AraC family transcriptional regulator compare
ABI39_RS12235 -1.0 -3.4 DUF4738 domain-containing protein compare
ABI39_RS13465 -1.0 -1.1 DUF3575 domain-containing protein compare
ABI39_RS17195 -1.0 -4.1 hypothetical protein compare
ABI39_RS04745 -1.0 -0.9 hypothetical protein compare
ABI39_RS16255 -1.0 -1.4 hypothetical protein compare
ABI39_RS19940 -1.0 -2.4 ATP-binding cassette domain-containing protein compare
ABI39_RS02460 -1.0 -0.7 peptidoglycan DD-metalloendopeptidase family protein compare
ABI39_RS11650 -1.0 -4.5 galactokinase compare
ABI39_RS19725 -1.0 -1.7 hypothetical protein compare
ABI39_RS16445 -0.9 -1.2 alpha-ribazole phosphatase compare
ABI39_RS12515 -0.9 -0.9 hypothetical protein compare
ABI39_RS16885 -0.9 -0.9 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS15320 -0.9 -4.4 PorT family protein compare
ABI39_RS06220 -0.9 -3.7 glycosyltransferase family 2 protein compare
ABI39_RS01730 -0.9 -2.5 electron transfer flavoprotein subunit alpha/FixB family protein compare
ABI39_RS02880 -0.9 -6.4 glutamate 5-kinase compare
ABI39_RS04505 -0.9 -2.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS12725 -0.9 -3.2 acetolactate synthase small subunit compare
ABI39_RS13185 -0.9 -0.6 manganese efflux pump compare
ABI39_RS18660 -0.9 -0.9 Hsp20/alpha crystallin family protein compare
ABI39_RS22615 -0.9 -1.3 helix-turn-helix domain-containing protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola dorei CL03T12C01 in carbon source experiments

For carbon source Locust bean gum; autoclaved across organisms