Experiment set3S357 for Phocaeicola dorei CL03T12C01

Compare to:

Locust bean gum; autoclaved 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS12415 -6.7 -4.6 biotin/lipoyl-binding protein compare
ABI39_RS09850 -4.4 -5.2 energy transducer TonB compare
ABI39_RS13185 -4.3 -2.3 manganese efflux pump compare
ABI39_RS17950 -4.2 -2.9 Crp/Fnr family transcriptional regulator compare
ABI39_RS08240 -4.2 -10.8 substrate-binding domain-containing protein compare
ABI39_RS04795 -4.1 -2.2 M28 family peptidase compare
ABI39_RS08220 -3.8 -13.1 TonB-dependent receptor compare
ABI39_RS06380 -3.6 -8.2 GH3 auxin-responsive promoter family protein compare
ABI39_RS09845 -3.6 -4.2 (d)CMP kinase compare
ABI39_RS12425 -3.6 -7.2 acyl-CoA carboxylase subunit beta compare
ABI39_RS11830 -3.6 -4.2 ATP phosphoribosyltransferase compare
ABI39_RS17140 -3.5 -2.4 AAA family ATPase compare
ABI39_RS22955 -3.4 -3.6 hypothetical protein compare
ABI39_RS21075 -3.3 -5.0 tryptophan synthase subunit alpha compare
ABI39_RS08135 -3.3 -2.8 YicC family protein compare
ABI39_RS21065 -3.2 -4.8 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS13180 -3.2 -3.7 FAD:protein FMN transferase compare
ABI39_RS12735 -3.0 -6.6 ketol-acid reductoisomerase compare
ABI39_RS17170 -2.9 -2.0 protein BatD compare
ABI39_RS12430 -2.9 -1.2 methylmalonyl-CoA epimerase compare
ABI39_RS18745 -2.9 -7.2 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS08225 -2.8 -8.2 GH32 C-terminal domain-containing protein compare
ABI39_RS16905 -2.8 -8.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS02755 -2.7 -1.9 glycosyltransferase compare
ABI39_RS16910 -2.7 -8.0 3-phosphoglycerate dehydrogenase compare
ABI39_RS10260 -2.7 -8.1 adenylosuccinate synthase compare
ABI39_RS17745 -2.6 -1.8 sulfur carrier protein ThiS compare
ABI39_RS00515 -2.6 -3.0 hypothetical protein compare
ABI39_RS12720 -2.6 -12.1 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS04860 -2.6 -3.9 HigA family addiction module antidote protein compare
ABI39_RS12420 -2.5 -5.0 OadG family protein compare
ABI39_RS12645 -2.5 -12.2 chorismate synthase compare
ABI39_RS20100 -2.5 -4.8 electron transport complex subunit RsxC compare
ABI39_RS01360 -2.4 -6.2 hypothetical protein compare
ABI39_RS08035 -2.4 -2.8 adenylosuccinate lyase compare
ABI39_RS04695 -2.4 -7.8 shikimate kinase compare
ABI39_RS10510 -2.4 -8.3 prephenate dehydratase compare
ABI39_RS10495 -2.4 -4.3 prephenate dehydrogenase compare
ABI39_RS10195 -2.4 -6.7 2-isopropylmalate synthase compare
ABI39_RS11405 -2.4 -8.0 hypothetical protein compare
ABI39_RS18330 -2.4 -6.9 PD40 domain-containing protein compare
ABI39_RS06920 -2.3 -6.1 glycosyltransferase compare
ABI39_RS20080 -2.3 -6.0 electron transport complex subunit RsxA compare
ABI39_RS10505 -2.3 -5.7 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS04145 -2.3 -1.9 transcription elongation factor GreA compare
ABI39_RS12715 -2.3 -6.9 dihydroxy-acid dehydratase compare
ABI39_RS10440 -2.3 -6.2 threonine synthase compare
ABI39_RS20090 -2.2 -5.8 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS20095 -2.2 -5.9 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS19930 -2.2 -3.5 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS12770 -2.2 -3.8 hypothetical protein compare
ABI39_RS19950 -2.2 -4.4 diaminopimelate decarboxylase compare
ABI39_RS17160 -2.2 -2.5 VWA domain-containing protein compare
ABI39_RS04700 -2.2 -4.6 type I DNA topoisomerase compare
ABI39_RS21060 -2.2 -6.6 anthranilate phosphoribosyltransferase compare
ABI39_RS14465 -2.1 -6.0 hypothetical protein compare
ABI39_RS01415 -2.1 -2.9 branched-chain amino acid aminotransferase compare
ABI39_RS09685 -2.1 -1.7 hypothetical protein compare
ABI39_RS10200 -2.1 -9.7 3-isopropylmalate dehydratase large subunit compare
ABI39_RS13225 -2.1 -2.7 phosphopyruvate hydratase compare
ABI39_RS10435 -2.1 -7.2 cofactor-independent phosphoglycerate mutase compare
ABI39_RS10640 -2.0 -6.9 serine dehydratase subunit alpha family protein compare
ABI39_RS19385 -2.0 -2.9 hypothetical protein compare
ABI39_RS02480 -2.0 -2.9 DJ-1/PfpI family protein compare
ABI39_RS12755 -2.0 -4.1 SurA N-terminal domain-containing protein compare
ABI39_RS20105 -2.0 -4.0 Fe-S cluster domain-containing protein compare
ABI39_RS21050 -2.0 -6.9 anthranilate synthase component I family protein compare
ABI39_RS04245 -2.0 -1.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS10110 -2.0 -6.3 S9 family peptidase compare
ABI39_RS16875 -1.9 -3.3 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS13835 -1.9 -1.8 DUF3037 domain-containing protein compare
ABI39_RS16880 -1.9 -2.9 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS17150 -1.9 -3.7 hypothetical protein compare
ABI39_RS10430 -1.9 -9.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS02315 -1.9 -6.2 IMP dehydrogenase compare
ABI39_RS10215 -1.9 -7.6 3-isopropylmalate dehydrogenase compare
ABI39_RS20070 -1.9 -6.0 UDP-glucose 4-epimerase GalE compare
ABI39_RS06925 -1.9 -5.7 glycosyltransferase compare
ABI39_RS08305 -1.8 -6.2 DUF4831 family protein compare
ABI39_RS06055 -1.8 -6.8 phosphoribosylamine--glycine ligase compare
ABI39_RS10500 -1.8 -3.5 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS09855 -1.8 -2.6 polyprenyl synthetase family protein compare
ABI39_RS07005 -1.8 -8.9 type II 3-dehydroquinate dehydratase compare
ABI39_RS11840 -1.8 -3.4 histidinol-phosphate transaminase compare
ABI39_RS04885 -1.8 -3.7 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS20085 -1.8 -5.5 electron transport complex subunit E compare
ABI39_RS14715 -1.8 -4.2 RidA family protein compare
ABI39_RS21045 -1.8 -3.1 tryptophan synthase subunit beta compare
ABI39_RS04280 -1.8 -3.8 DUF4292 domain-containing protein compare
ABI39_RS20395 -1.7 -3.0 DedA family protein compare
ABI39_RS09575 -1.7 -2.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS11845 -1.7 -3.8 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS09830 -1.7 -6.9 methylmalonyl Co-A mutase-associated GTPase MeaB compare
ABI39_RS05660 -1.7 -5.1 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS17175 -1.7 -3.6 tetratricopeptide repeat protein compare
ABI39_RS19925 -1.7 -4.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS19140 -1.6 -2.3 hypothetical protein compare
ABI39_RS01655 -1.6 -6.7 methylmalonyl-CoA mutase compare
ABI39_RS10205 -1.6 -3.0 3-isopropylmalate dehydratase small subunit compare
ABI39_RS15265 -1.6 -2.4 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS15670 -1.6 -7.6 cobalamin biosynthesis protein CobD compare
ABI39_RS16870 -1.6 -2.8 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS00205 -1.6 -3.4 phosphoglucosamine mutase compare
ABI39_RS14560 -1.6 -2.3 aspartate 1-decarboxylase compare
ABI39_RS06010 -1.5 -4.6 polysaccharide deacetylase family protein compare
ABI39_RS10210 -1.5 -5.2 2-isopropylmalate synthase compare
ABI39_RS10870 -1.5 -6.3 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS11835 -1.5 -4.4 histidinol dehydrogenase compare
ABI39_RS06115 -1.5 -6.3 phosphatase PAP2 family protein compare
ABI39_RS06935 -1.5 -3.4 hemolysin activation protein compare
ABI39_RS02290 -1.5 -2.8 hypothetical protein compare
ABI39_RS16895 -1.4 -2.6 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS12665 -1.4 -4.4 shikimate dehydrogenase compare
ABI39_RS15410 -1.4 -5.0 DUF4296 domain-containing protein compare
ABI39_RS01725 -1.4 -2.6 electron transfer flavoprotein subunit beta/FixA family protein compare
ABI39_RS00475 -1.4 -4.6 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS09915 -1.4 -2.1 DUF5056 domain-containing protein compare
ABI39_RS04930 -1.4 -4.1 helix-turn-helix transcriptional regulator compare
ABI39_RS17770 -1.4 -2.3 flavodoxin family protein compare
ABI39_RS11485 -1.3 -2.5 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS02470 -1.3 -2.7 ATP-dependent DNA helicase RecG compare
ABI39_RS01730 -1.3 -3.2 electron transfer flavoprotein subunit alpha/FixB family protein compare
ABI39_RS15650 -1.3 -4.8 cobyrinate a,c-diamide synthase compare
ABI39_RS12725 -1.3 -2.5 acetolactate synthase small subunit compare
ABI39_RS15710 -1.3 -1.4 hypothetical protein compare
ABI39_RS06940 -1.3 -2.7 LicD family protein compare
ABI39_RS09245 -1.3 -7.0 cardiolipin synthase compare
ABI39_RS15770 -1.3 -1.5 hypothetical protein compare
ABI39_RS02960 -1.3 -6.0 pyrroline-5-carboxylate reductase compare
ABI39_RS11635 -1.3 -2.3 NUDIX hydrolase compare
ABI39_RS20175 -1.3 -1.8 translation elongation factor 4 compare
ABI39_RS19615 -1.2 -1.5 hypothetical protein compare
ABI39_RS06675 -1.2 -5.4 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS06995 -1.2 -3.3 tetratricopeptide repeat protein compare
ABI39_RS02125 -1.2 -1.2 hypothetical protein compare
ABI39_RS09770 -1.2 -4.6 DUF349 domain-containing protein compare
ABI39_RS08195 -1.2 -2.9 hypothetical protein compare
ABI39_RS17420 -1.2 -3.6 serine hydroxymethyltransferase compare
ABI39_RS14480 -1.2 -4.9 ferrous iron transport protein B compare
ABI39_RS19935 -1.2 -4.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS12805 -1.2 -2.2 hypothetical protein compare
ABI39_RS19920 -1.2 -3.6 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS15490 -1.2 -5.7 precorrin-2 C(20)-methyltransferase compare
ABI39_RS01735 -1.2 -3.7 acyl-CoA dehydrogenase family protein compare
ABI39_RS20355 -1.2 -6.4 carboxypeptidase-like regulatory domain-containing protein compare
ABI39_RS19945 -1.2 -4.8 aspartate kinase compare
ABI39_RS16460 -1.2 -5.5 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
ABI39_RS07510 -1.1 -1.6 hypothetical protein compare
ABI39_RS15320 -1.1 -6.4 PorT family protein compare
ABI39_RS15660 -1.1 -5.5 cobyric acid synthase compare
ABI39_RS14030 -1.1 -2.5 MFS transporter compare
ABI39_RS16455 -1.1 -5.9 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
ABI39_RS04675 -1.1 -0.9 hypothetical protein compare
ABI39_RS22175 -1.1 -1.0 N-acetylmuramoyl-L-alanine amidase compare
ABI39_RS03165 -1.1 -2.4 DUF3408 domain-containing protein compare
ABI39_RS18385 -1.1 -1.2 helix-turn-helix domain-containing protein compare
ABI39_RS14345 -1.0 -5.6 dicarboxylate/amino acid:cation symporter compare
ABI39_RS00410 -1.0 -2.2 response regulator compare
ABI39_RS16450 -1.0 -2.8 adenosylcobinamide-GDP ribazoletransferase compare
ABI39_RS13160 -1.0 -2.0 DUF4847 family protein compare
ABI39_RS02970 -1.0 -4.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS15175 -1.0 -1.8 hypothetical protein compare
ABI39_RS02350 -1.0 -3.4 ABC transporter permease compare
ABI39_RS00405 -1.0 -7.4 phosphoribosylformylglycinamidine synthase compare
ABI39_RS17205 -1.0 -2.0 ATP-dependent Clp protease ATP-binding subunit compare
ABI39_RS08480 -1.0 -0.9 histidine kinase compare
ABI39_RS07095 -1.0 -6.9 argininosuccinate lyase compare
ABI39_RS12810 -1.0 -1.9 hypothetical protein compare
ABI39_RS03200 -1.0 -3.0 helix-turn-helix transcriptional regulator compare
ABI39_RS09195 -1.0 -1.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS00770 -1.0 -5.6 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS15495 -1.0 -3.4 ABC transporter substrate-binding protein compare
ABI39_RS01650 -1.0 -3.1 methylmalonyl-CoA mutase small subunit compare
ABI39_RS14255 -1.0 -3.2 DUF452 family protein compare
ABI39_RS02285 -1.0 -1.3 DNA mismatch repair endonuclease MutL compare
ABI39_RS02880 -1.0 -4.1 glutamate 5-kinase compare
ABI39_RS11655 -1.0 -1.5 MFS transporter compare
ABI39_RS12170 -1.0 -0.8 MarR family transcriptional regulator compare
ABI39_RS02870 -1.0 -2.7 acetylornithine carbamoyltransferase compare
ABI39_RS05280 -1.0 -4.5 S41 family peptidase compare
ABI39_RS06670 -1.0 -4.2 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS09805 -1.0 -1.4 HipA N-terminal domain-containing protein compare
ABI39_RS15505 -0.9 -3.4 ABC transporter ATP-binding protein compare
ABI39_RS17335 -0.9 -4.8 phosphatidylinositol-4-phosphate 5-kinase compare
ABI39_RS12235 -0.9 -3.0 DUF4738 domain-containing protein compare
ABI39_RS02355 -0.9 -3.2 ABC transporter ATP-binding protein compare
ABI39_RS06070 -0.9 -1.2 hypothetical protein compare
ABI39_RS20220 -0.9 -1.8 DNA-binding protein compare
ABI39_RS10650 -0.9 -5.6 AraC family transcriptional regulator compare
ABI39_RS11630 -0.9 -3.2 L-ribulose-5-phosphate 4-epimerase compare
ABI39_RS02055 -0.9 -2.6 BamA/TamA family outer membrane protein compare
ABI39_RS08720 -0.9 -1.3 DUF1896 domain-containing protein compare
ABI39_RS11805 -0.9 -0.7 hypothetical protein compare
ABI39_RS21350 -0.9 -1.5 aspartate--ammonia ligase compare
ABI39_RS14245 -0.9 -5.7 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS17195 -0.9 -4.4 hypothetical protein compare
ABI39_RS04505 -0.9 -2.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS02460 -0.9 -1.3 peptidoglycan DD-metalloendopeptidase family protein compare
ABI39_RS02500 -0.9 -4.4 pyridoxine 5'-phosphate synthase compare
ABI39_RS16385 -0.9 -1.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola dorei CL03T12C01 in carbon source experiments

For carbon source Locust bean gum; autoclaved across organisms