Experiment set3S351 for Phocaeicola dorei CL03T12C01

Compare to:

Pectin from citrus peel; autoclaved 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS02980 -6.2 -7.4 N-acetyltransferase compare
ABI39_RS12415 -5.7 -3.9 biotin/lipoyl-binding protein compare
ABI39_RS21060 -5.2 -8.3 anthranilate phosphoribosyltransferase compare
ABI39_RS06380 -5.1 -6.1 GH3 auxin-responsive promoter family protein compare
ABI39_RS12425 -4.8 -6.6 acyl-CoA carboxylase subunit beta compare
ABI39_RS16905 -4.8 -9.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS01650 -4.8 -7.8 methylmalonyl-CoA mutase small subunit compare
ABI39_RS10500 -4.8 -3.3 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS15375 -4.7 -10.0 sugar kinase compare
ABI39_RS04685 -4.7 -5.7 acetylglutamate kinase compare
ABI39_RS02315 -4.5 -9.1 IMP dehydrogenase compare
ABI39_RS20080 -4.4 -6.0 electron transport complex subunit RsxA compare
ABI39_RS06010 -4.4 -6.7 polysaccharide deacetylase family protein compare
ABI39_RS10260 -4.4 -7.2 adenylosuccinate synthase compare
ABI39_RS10505 -4.3 -10.5 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS12420 -4.2 -5.0 OadG family protein compare
ABI39_RS04695 -4.2 -4.5 shikimate kinase compare
ABI39_RS20070 -4.2 -6.4 UDP-glucose 4-epimerase GalE compare
ABI39_RS12770 -4.2 -2.9 hypothetical protein compare
ABI39_RS16620 -4.1 -1.8 phage integrase SAM-like domain-containing protein compare
ABI39_RS08195 -4.1 -5.5 hypothetical protein compare
ABI39_RS18910 -4.0 -2.7 preprotein translocase subunit YajC compare
ABI39_RS18330 -4.0 -9.3 PD40 domain-containing protein compare
ABI39_RS21075 -3.9 -6.8 tryptophan synthase subunit alpha compare
ABI39_RS09685 -3.8 -2.6 hypothetical protein compare
ABI39_RS06055 -3.8 -7.0 phosphoribosylamine--glycine ligase compare
ABI39_RS21045 -3.8 -5.8 tryptophan synthase subunit beta compare
ABI39_RS10110 -3.8 -10.1 S9 family peptidase compare
ABI39_RS01655 -3.8 -9.7 methylmalonyl-CoA mutase compare
ABI39_RS21050 -3.8 -7.2 anthranilate synthase component I family protein compare
ABI39_RS10430 -3.7 -12.0 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS21065 -3.7 -6.6 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS15365 -3.7 -3.5 altronate dehydratase compare
ABI39_RS02870 -3.7 -7.9 acetylornithine carbamoyltransferase compare
ABI39_RS20095 -3.6 -7.5 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS20085 -3.5 -5.5 electron transport complex subunit E compare
ABI39_RS12430 -3.5 -1.5 methylmalonyl-CoA epimerase compare
ABI39_RS11405 -3.5 -8.1 hypothetical protein compare
ABI39_RS15380 -3.5 -3.5 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
ABI39_RS09845 -3.5 -2.4 (d)CMP kinase compare
ABI39_RS20090 -3.4 -6.5 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS12645 -3.4 -11.4 chorismate synthase compare
ABI39_RS00475 -3.4 -5.3 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS13185 -3.4 -2.3 manganese efflux pump compare
ABI39_RS04795 -3.4 -2.3 M28 family peptidase compare
ABI39_RS00405 -3.4 -13.2 phosphoribosylformylglycinamidine synthase compare
ABI39_RS09850 -3.4 -4.0 energy transducer TonB compare
ABI39_RS07095 -3.4 -14.6 argininosuccinate lyase compare
ABI39_RS16885 -3.3 -2.3 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS10440 -3.3 -8.9 threonine synthase compare
ABI39_RS17950 -3.3 -2.3 Crp/Fnr family transcriptional regulator compare
ABI39_RS02975 -3.3 -6.8 argininosuccinate synthase compare
ABI39_RS12675 -3.2 -4.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS12720 -3.2 -9.1 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS07005 -3.2 -7.7 type II 3-dehydroquinate dehydratase compare
ABI39_RS07790 -3.1 -6.7 M20 family metallo-hydrolase compare
ABI39_RS19815 -3.1 -2.3 hypothetical protein compare
ABI39_RS17175 -3.1 -3.0 tetratricopeptide repeat protein compare
ABI39_RS22955 -3.1 -3.2 hypothetical protein compare
ABI39_RS12665 -3.1 -7.4 shikimate dehydrogenase compare
ABI39_RS10435 -3.1 -7.0 cofactor-independent phosphoglycerate mutase compare
ABI39_RS04280 -3.0 -4.1 DUF4292 domain-containing protein compare
ABI39_RS01360 -3.0 -6.4 hypothetical protein compare
ABI39_RS18745 -3.0 -3.5 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS19925 -3.0 -6.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS02875 -3.0 -7.2 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS06670 -3.0 -10.4 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS06995 -3.0 -6.8 tetratricopeptide repeat protein compare
ABI39_RS15410 -3.0 -6.0 DUF4296 domain-containing protein compare
ABI39_RS02880 -3.0 -7.1 glutamate 5-kinase compare
ABI39_RS20105 -2.9 -5.3 Fe-S cluster domain-containing protein compare
ABI39_RS19985 -2.9 -2.6 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS14465 -2.9 -5.4 hypothetical protein compare
ABI39_RS02960 -2.9 -9.8 pyrroline-5-carboxylate reductase compare
ABI39_RS10495 -2.9 -4.7 prephenate dehydrogenase compare
ABI39_RS19950 -2.9 -4.7 diaminopimelate decarboxylase compare
ABI39_RS15475 -2.9 -6.5 glucuronate isomerase compare
ABI39_RS16910 -2.8 -6.7 3-phosphoglycerate dehydrogenase compare
ABI39_RS12735 -2.7 -6.2 ketol-acid reductoisomerase compare
ABI39_RS10640 -2.7 -9.4 serine dehydratase subunit alpha family protein compare
ABI39_RS00515 -2.7 -2.8 hypothetical protein compare
ABI39_RS17140 -2.7 -1.8 AAA family ATPase compare
ABI39_RS09575 -2.6 -1.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS01415 -2.6 -2.5 branched-chain amino acid aminotransferase compare
ABI39_RS02970 -2.6 -6.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS20100 -2.6 -5.3 electron transport complex subunit RsxC compare
ABI39_RS08305 -2.6 -5.3 DUF4831 family protein compare
ABI39_RS12715 -2.5 -7.0 dihydroxy-acid dehydratase compare
ABI39_RS17150 -2.5 -2.4 hypothetical protein compare
ABI39_RS00205 -2.5 -3.0 phosphoglucosamine mutase compare
ABI39_RS04700 -2.5 -3.0 type I DNA topoisomerase compare
ABI39_RS06675 -2.5 -6.2 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS11830 -2.5 -3.9 ATP phosphoribosyltransferase compare
ABI39_RS09040 -2.5 -10.8 MFS transporter compare
ABI39_RS19930 -2.4 -4.5 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS17195 -2.4 -9.0 hypothetical protein compare
ABI39_RS11845 -2.4 -6.2 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS07090 -2.4 -2.4 hypothetical protein compare
ABI39_RS02290 -2.4 -3.6 hypothetical protein compare
ABI39_RS04145 -2.4 -1.6 transcription elongation factor GreA compare
ABI39_RS08135 -2.4 -2.6 YicC family protein compare
ABI39_RS08035 -2.4 -1.6 adenylosuccinate lyase compare
ABI39_RS15480 -2.3 -5.9 tagaturonate reductase compare
ABI39_RS16895 -2.3 -3.1 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS10510 -2.3 -7.0 prephenate dehydratase compare
ABI39_RS15265 -2.2 -2.1 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS10215 -2.2 -7.3 3-isopropylmalate dehydrogenase compare
ABI39_RS11485 -2.2 -3.5 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS14715 -2.1 -4.9 RidA family protein compare
ABI39_RS17170 -2.1 -1.5 protein BatD compare
ABI39_RS20965 -2.1 -2.3 SPOR domain-containing protein compare
ABI39_RS02755 -2.1 -1.4 glycosyltransferase compare
ABI39_RS06920 -2.1 -4.8 glycosyltransferase compare
ABI39_RS05660 -2.1 -5.1 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS19385 -2.0 -2.7 hypothetical protein compare
ABI39_RS17160 -2.0 -1.4 VWA domain-containing protein compare
ABI39_RS04930 -2.0 -4.0 helix-turn-helix transcriptional regulator compare
ABI39_RS04970 -2.0 -3.3 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS13180 -2.0 -2.3 FAD:protein FMN transferase compare
ABI39_RS11805 -2.0 -1.2 hypothetical protein compare
ABI39_RS09830 -2.0 -6.5 methylmalonyl Co-A mutase-associated GTPase MeaB compare
ABI39_RS09770 -2.0 -5.9 DUF349 domain-containing protein compare
ABI39_RS16455 -1.9 -7.8 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
ABI39_RS06235 -1.9 -6.0 UDP-galactopyranose mutase compare
ABI39_RS00770 -1.9 -6.8 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS15665 -1.9 -3.9 pyridoxal phosphate-dependent class II aminotransferase compare
ABI39_RS13845 -1.9 -1.1 histone H1 compare
ABI39_RS15650 -1.9 -5.5 cobyrinate a,c-diamide synthase compare
ABI39_RS16040 -1.9 -1.1 hypothetical protein compare
ABI39_RS00410 -1.9 -3.0 response regulator compare
ABI39_RS16450 -1.8 -4.6 adenosylcobinamide-GDP ribazoletransferase compare
ABI39_RS13795 -1.8 -3.0 hypothetical protein compare
ABI39_RS16875 -1.8 -2.6 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS10200 -1.8 -6.4 3-isopropylmalate dehydratase large subunit compare
ABI39_RS15765 -1.7 -1.5 hypothetical protein compare
ABI39_RS15320 -1.7 -7.6 PorT family protein compare
ABI39_RS15670 -1.7 -7.3 cobalamin biosynthesis protein CobD compare
ABI39_RS15660 -1.7 -5.5 cobyric acid synthase compare
ABI39_RS04885 -1.7 -2.5 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS10210 -1.7 -4.8 2-isopropylmalate synthase compare
ABI39_RS10205 -1.7 -3.5 3-isopropylmalate dehydratase small subunit compare
ABI39_RS17420 -1.7 -4.9 serine hydroxymethyltransferase compare
ABI39_RS02355 -1.6 -3.3 ABC transporter ATP-binding protein compare
ABI39_RS09245 -1.6 -6.7 cardiolipin synthase compare
ABI39_RS11860 -1.6 -1.8 NADH peroxidase compare
ABI39_RS15515 -1.6 -6.0 precorrin-4 C(11)-methyltransferase compare
ABI39_RS13465 -1.6 -2.0 DUF3575 domain-containing protein compare
ABI39_RS22925 -1.6 -1.5 smalltalk protein compare
ABI39_RS17205 -1.6 -2.5 ATP-dependent Clp protease ATP-binding subunit compare
ABI39_RS02140 -1.6 -1.1 TetR/AcrR family transcriptional regulator compare
ABI39_RS20930 -1.6 -8.8 tetratricopeptide repeat protein compare
ABI39_RS16515 -1.5 -2.2 tRNA guanosine(34) transglycosylase Tgt compare
ABI39_RS09070 -1.5 -9.4 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS15415 -1.5 -3.0 hypothetical protein compare
ABI39_RS15505 -1.5 -4.9 ABC transporter ATP-binding protein compare
ABI39_RS09805 -1.5 -2.8 HipA N-terminal domain-containing protein compare
ABI39_RS12755 -1.5 -2.0 SurA N-terminal domain-containing protein compare
ABI39_RS17130 -1.5 -1.1 HU family DNA-binding protein compare
ABI39_RS02350 -1.5 -3.3 ABC transporter permease compare
ABI39_RS19945 -1.5 -6.4 aspartate kinase compare
ABI39_RS11835 -1.4 -3.2 histidinol dehydrogenase compare
ABI39_RS16880 -1.4 -2.3 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS19935 -1.4 -3.9 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS20860 -1.4 -1.6 HU family DNA-binding protein compare
ABI39_RS10195 -1.4 -5.1 2-isopropylmalate synthase compare
ABI39_RS20355 -1.4 -7.3 carboxypeptidase-like regulatory domain-containing protein compare
ABI39_RS07420 -1.4 -3.1 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS02500 -1.4 -4.8 pyridoxine 5'-phosphate synthase compare
ABI39_RS03320 -1.4 -6.8 FecR domain-containing protein compare
ABI39_RS15920 -1.4 -2.8 type II toxin-antitoxin system HigB family toxin compare
ABI39_RS13380 -1.4 -4.1 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABI39_RS15525 -1.4 -4.1 precorrin-3B C(17)-methyltransferase compare
ABI39_RS15510 -1.4 -2.7 cobalt-precorrin-5B (C(1))-methyltransferase compare
ABI39_RS10650 -1.4 -8.3 AraC family transcriptional regulator compare
ABI39_RS18385 -1.4 -1.3 helix-turn-helix domain-containing protein compare
ABI39_RS13835 -1.3 -1.5 DUF3037 domain-containing protein compare
ABI39_RS15490 -1.3 -5.7 precorrin-2 C(20)-methyltransferase compare
ABI39_RS11840 -1.3 -3.5 histidinol-phosphate transaminase compare
ABI39_RS16870 -1.3 -2.1 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS04860 -1.3 -1.8 HigA family addiction module antidote protein compare
ABI39_RS14030 -1.3 -2.1 MFS transporter compare
ABI39_RS04245 -1.3 -1.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS17335 -1.3 -5.8 phosphatidylinositol-4-phosphate 5-kinase compare
ABI39_RS09170 -1.3 -8.6 response regulator compare
ABI39_RS15950 -1.3 -1.4 hypothetical protein compare
ABI39_RS03005 -1.3 -4.4 rhamnulose-1-phosphate aldolase compare
ABI39_RS06115 -1.3 -5.1 phosphatase PAP2 family protein compare
ABI39_RS19485 -1.3 -1.3 hypothetical protein compare
ABI39_RS03885 -1.3 -2.5 adenosine kinase compare
ABI39_RS16460 -1.3 -4.3 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
ABI39_RS11650 -1.3 -4.5 galactokinase compare
ABI39_RS02470 -1.3 -2.5 ATP-dependent DNA helicase RecG compare
ABI39_RS03110 -1.3 -1.8 hypothetical protein compare
ABI39_RS09195 -1.2 -1.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS08850 -1.2 -2.6 toprim domain-containing protein compare
ABI39_RS12780 -1.2 -2.3 type III pantothenate kinase compare
ABI39_RS13170 -1.2 -6.2 Crp/Fnr family transcriptional regulator compare
ABI39_RS04675 -1.2 -1.2 hypothetical protein compare
ABI39_RS09065 -1.2 -7.3 TonB-dependent receptor compare
ABI39_RS14265 -1.2 -4.7 ATP-dependent dethiobiotin synthetase BioD compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Pectin from citrus peel; autoclaved in Phocaeicola dorei CL03T12C01

For carbon source Pectin from citrus peel; autoclaved across organisms