Experiment set3S349 for Phocaeicola dorei CL03T12C01

Compare to:

polygalacturonic acid; autoclaved 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS02975 -4.7 -10.1 argininosuccinate synthase compare
ABI39_RS15375 -4.7 -12.1 sugar kinase compare
ABI39_RS02970 -4.7 -11.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS07005 -4.7 -8.2 type II 3-dehydroquinate dehydratase compare
ABI39_RS19935 -4.6 -11.2 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS11845 -4.6 -8.3 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS04695 -4.6 -6.3 shikimate kinase compare
ABI39_RS21065 -4.5 -7.5 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS00205 -4.3 -3.0 phosphoglucosamine mutase compare
ABI39_RS19385 -4.2 -4.0 hypothetical protein compare
ABI39_RS21060 -4.1 -10.3 anthranilate phosphoribosyltransferase compare
ABI39_RS02870 -4.1 -11.6 acetylornithine carbamoyltransferase compare
ABI39_RS12770 -3.9 -3.8 hypothetical protein compare
ABI39_RS02880 -3.9 -9.8 glutamate 5-kinase compare
ABI39_RS10505 -3.9 -14.5 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS02980 -3.9 -9.9 N-acetyltransferase compare
ABI39_RS04685 -3.9 -8.6 acetylglutamate kinase compare
ABI39_RS04795 -3.9 -2.0 M28 family peptidase compare
ABI39_RS04280 -3.8 -4.5 DUF4292 domain-containing protein compare
ABI39_RS07095 -3.8 -20.5 argininosuccinate lyase compare
ABI39_RS07790 -3.8 -9.5 M20 family metallo-hydrolase compare
ABI39_RS13185 -3.8 -2.0 manganese efflux pump compare
ABI39_RS02875 -3.7 -11.6 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS21075 -3.7 -6.9 tryptophan synthase subunit alpha compare
ABI39_RS19925 -3.7 -8.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS10495 -3.7 -10.7 prephenate dehydrogenase compare
ABI39_RS12665 -3.6 -9.7 shikimate dehydrogenase compare
ABI39_RS17950 -3.6 -2.5 Crp/Fnr family transcriptional regulator compare
ABI39_RS12645 -3.6 -17.4 chorismate synthase compare
ABI39_RS11830 -3.5 -4.4 ATP phosphoribosyltransferase compare
ABI39_RS15365 -3.5 -4.9 altronate dehydratase compare
ABI39_RS21045 -3.5 -5.7 tryptophan synthase subunit beta compare
ABI39_RS01725 -3.5 -4.5 electron transfer flavoprotein subunit beta/FixA family protein compare
ABI39_RS07090 -3.5 -8.6 hypothetical protein compare
ABI39_RS19930 -3.4 -5.2 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS11835 -3.4 -6.9 histidinol dehydrogenase compare
ABI39_RS19920 -3.4 -6.8 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS16910 -3.4 -9.1 3-phosphoglycerate dehydrogenase compare
ABI39_RS10510 -3.3 -9.7 prephenate dehydratase compare
ABI39_RS07815 -3.3 -5.4 RNA polymerase sigma factor compare
ABI39_RS00210 -3.3 -4.7 DUF4827 domain-containing protein compare
ABI39_RS12715 -3.2 -12.5 dihydroxy-acid dehydratase compare
ABI39_RS15410 -3.2 -8.1 DUF4296 domain-containing protein compare
ABI39_RS14560 -3.2 -3.2 aspartate 1-decarboxylase compare
ABI39_RS00410 -3.2 -2.2 response regulator compare
ABI39_RS20965 -3.2 -2.7 SPOR domain-containing protein compare
ABI39_RS15475 -3.1 -10.6 glucuronate isomerase compare
ABI39_RS10500 -3.1 -5.8 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS16905 -3.0 -11.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS12720 -3.0 -12.1 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS15480 -3.0 -6.9 tagaturonate reductase compare
ABI39_RS17175 -3.0 -4.5 tetratricopeptide repeat protein compare
ABI39_RS18745 -3.0 -4.5 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS15380 -2.9 -3.1 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
ABI39_RS12735 -2.9 -8.8 ketol-acid reductoisomerase compare
ABI39_RS20080 -2.9 -6.7 electron transport complex subunit RsxA compare
ABI39_RS13180 -2.9 -2.0 FAD:protein FMN transferase compare
ABI39_RS20095 -2.8 -9.7 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS20085 -2.8 -6.0 electron transport complex subunit E compare
ABI39_RS09040 -2.8 -14.3 MFS transporter compare
ABI39_RS20105 -2.8 -5.8 Fe-S cluster domain-containing protein compare
ABI39_RS20100 -2.7 -8.9 electron transport complex subunit RsxC compare
ABI39_RS02960 -2.7 -12.8 pyrroline-5-carboxylate reductase compare
ABI39_RS19950 -2.7 -5.4 diaminopimelate decarboxylase compare
ABI39_RS11840 -2.7 -6.5 histidinol-phosphate transaminase compare
ABI39_RS21050 -2.7 -5.7 anthranilate synthase component I family protein compare
ABI39_RS01415 -2.6 -3.5 branched-chain amino acid aminotransferase compare
ABI39_RS20395 -2.6 -3.0 DedA family protein compare
ABI39_RS17140 -2.5 -2.4 AAA family ATPase compare
ABI39_RS20090 -2.5 -7.5 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS16305 -2.5 -1.1 DUF4141 domain-containing protein compare
ABI39_RS01735 -2.5 -9.0 acyl-CoA dehydrogenase family protein compare
ABI39_RS00090 -2.4 -4.8 HAMP domain-containing histidine kinase compare
ABI39_RS09575 -2.4 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS08305 -2.4 -6.5 DUF4831 family protein compare
ABI39_RS06380 -2.4 -10.3 GH3 auxin-responsive promoter family protein compare
ABI39_RS15400 -2.3 -9.6 TraR/DksA C4-type zinc finger protein compare
ABI39_RS01360 -2.3 -7.9 hypothetical protein compare
ABI39_RS18330 -2.3 -10.0 PD40 domain-containing protein compare
ABI39_RS15320 -2.3 -10.8 PorT family protein compare
ABI39_RS01730 -2.3 -8.2 electron transfer flavoprotein subunit alpha/FixB family protein compare
ABI39_RS04285 -2.3 -10.3 tetratricopeptide repeat protein compare
ABI39_RS03880 -2.2 -13.4 PDZ domain-containing protein compare
ABI39_RS17170 -2.2 -1.5 protein BatD compare
ABI39_RS02755 -2.2 -2.1 glycosyltransferase compare
ABI39_RS06010 -2.2 -7.1 polysaccharide deacetylase family protein compare
ABI39_RS10200 -2.1 -14.3 3-isopropylmalate dehydratase large subunit compare
ABI39_RS10215 -2.1 -11.0 3-isopropylmalate dehydrogenase compare
ABI39_RS04675 -2.1 -1.5 hypothetical protein compare
ABI39_RS17160 -2.1 -1.4 VWA domain-containing protein compare
ABI39_RS10195 -2.1 -10.0 2-isopropylmalate synthase compare
ABI39_RS11185 -2.1 -1.2 DUF3408 domain-containing protein compare
ABI39_RS10205 -2.1 -8.2 3-isopropylmalate dehydratase small subunit compare
ABI39_RS17150 -2.0 -3.6 hypothetical protein compare
ABI39_RS11485 -2.0 -3.8 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS10110 -2.0 -9.6 S9 family peptidase compare
ABI39_RS20930 -2.0 -12.3 tetratricopeptide repeat protein compare
ABI39_RS04700 -1.9 -3.2 type I DNA topoisomerase compare
ABI39_RS02055 -1.9 -3.8 BamA/TamA family outer membrane protein compare
ABI39_RS12755 -1.9 -2.2 SurA N-terminal domain-containing protein compare
ABI39_RS14145 -1.9 -2.4 diacylglycerol kinase family protein compare
ABI39_RS19020 -1.9 -14.2 response regulator compare
ABI39_RS08255 -1.8 -7.8 DUF3256 family protein compare
ABI39_RS10435 -1.8 -9.4 cofactor-independent phosphoglycerate mutase compare
ABI39_RS08035 -1.8 -2.6 adenylosuccinate lyase compare
ABI39_RS10430 -1.8 -11.3 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS10090 -1.8 -11.9 hypothetical protein compare
ABI39_RS09245 -1.8 -7.4 cardiolipin synthase compare
ABI39_RS15415 -1.8 -5.4 hypothetical protein compare
ABI39_RS16705 -1.8 -12.1 translocation/assembly module TamB compare
ABI39_RS05660 -1.7 -8.5 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS08195 -1.7 -5.6 hypothetical protein compare
ABI39_RS10440 -1.7 -7.7 threonine synthase compare
ABI39_RS00770 -1.7 -10.9 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS13225 -1.7 -1.9 phosphopyruvate hydratase compare
ABI39_RS22145 -1.7 -5.2 hypothetical protein compare
ABI39_RS20070 -1.7 -7.3 UDP-glucose 4-epimerase GalE compare
ABI39_RS09685 -1.7 -2.2 hypothetical protein compare
ABI39_RS00755 -1.6 -7.2 hypothetical protein compare
ABI39_RS06995 -1.6 -7.3 tetratricopeptide repeat protein compare
ABI39_RS15425 -1.6 -9.8 BamA/TamA family outer membrane protein compare
ABI39_RS06920 -1.6 -4.3 glycosyltransferase compare
ABI39_RS13815 -1.6 -9.6 TonB-dependent receptor compare
ABI39_RS15585 -1.6 -1.2 hypothetical protein compare
ABI39_RS07910 -1.6 -7.1 thiamine-phosphate kinase compare
ABI39_RS11405 -1.5 -8.6 hypothetical protein compare
ABI39_RS13150 -1.5 -7.1 S41 family peptidase compare
ABI39_RS20900 -1.5 -9.5 endolytic transglycosylase MltG compare
ABI39_RS10260 -1.5 -8.4 adenylosuccinate synthase compare
ABI39_RS14510 -1.5 -4.2 3'-5' exonuclease compare
ABI39_RS10640 -1.5 -8.4 serine dehydratase subunit alpha family protein compare
ABI39_RS09815 -1.4 -11.1 hypothetical protein compare
ABI39_RS05280 -1.4 -8.2 S41 family peptidase compare
ABI39_RS13820 -1.4 -7.3 DUF4625 domain-containing protein compare
ABI39_RS13010 -1.4 -4.7 hypothetical protein compare
ABI39_RS10085 -1.3 -3.2 enoyl-ACP reductase compare
ABI39_RS04175 -1.3 -10.9 FKBP-type peptidyl-prolyl cis-trans isomerase compare
ABI39_RS17430 -1.3 -5.2 OmpA family protein compare
ABI39_RS17130 -1.3 -0.9 HU family DNA-binding protein compare
ABI39_RS04970 -1.3 -3.7 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS14890 -1.3 -0.9 tRNA-Asp compare
ABI39_RS21620 -1.3 -7.4 triose-phosphate isomerase compare
ABI39_RS06115 -1.3 -7.2 phosphatase PAP2 family protein compare
ABI39_RS02060 -1.3 -4.2 translocation/assembly module TamB domain-containing protein compare
ABI39_RS04920 -1.3 -5.7 DUF2975 domain-containing protein compare
ABI39_RS16475 -1.2 -3.5 UDP-glucose/GDP-mannose dehydrogenase family protein compare
ABI39_RS19630 -1.2 -1.4 hypothetical protein compare
ABI39_RS02470 -1.2 -3.3 ATP-dependent DNA helicase RecG compare
ABI39_RS07890 -1.2 -1.2 hypothetical protein compare
ABI39_RS13855 -1.2 -3.9 response regulator transcription factor compare
ABI39_RS09835 -1.2 -4.2 6-phosphofructokinase compare
ABI39_RS22225 -1.2 -1.2 hypothetical protein compare
ABI39_RS06030 -1.2 -2.3 helix-turn-helix transcriptional regulator compare
ABI39_RS11805 -1.2 -0.8 hypothetical protein compare
ABI39_RS12650 -1.2 -2.9 LemA family protein compare
ABI39_RS04690 -1.2 -5.1 biosynthetic arginine decarboxylase compare
ABI39_RS12170 -1.2 -0.9 MarR family transcriptional regulator compare
ABI39_RS11350 -1.2 -2.5 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS04135 -1.2 -6.3 mannose-1-phosphate guanylyltransferase compare
ABI39_RS13195 -1.2 -3.2 hypothetical protein compare
ABI39_RS17745 -1.1 -1.3 sulfur carrier protein ThiS compare
ABI39_RS02485 -1.1 -4.0 TonB family protein compare
ABI39_RS15720 -1.1 -2.6 hypothetical protein compare
ABI39_RS04170 -1.1 -3.0 FKBP-type peptidyl-prolyl cis-trans isomerase compare
ABI39_RS15535 -1.1 -3.4 NAD(P)H-dependent oxidoreductase compare
ABI39_RS14255 -1.1 -2.7 DUF452 family protein compare
ABI39_RS01655 -1.1 -6.6 methylmalonyl-CoA mutase compare
ABI39_RS14260 -1.1 -6.5 malonyl-ACP O-methyltransferase BioC compare
ABI39_RS04715 -1.1 -4.2 NUDIX domain-containing protein compare
ABI39_RS12135 -1.1 -3.5 1,4-dihydroxy-2-naphthoyl-CoA synthase compare
ABI39_RS14245 -1.1 -7.0 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS22855 -1.1 -1.7 hypothetical protein compare
ABI39_RS10325 -1.1 -4.8 ABC-F family ATP-binding cassette domain-containing protein compare
ABI39_RS01270 -1.1 -5.8 TetR/AcrR family transcriptional regulator compare
ABI39_RS06050 -1.1 -3.8 hypothetical protein compare
ABI39_RS08900 -1.1 -1.0 hypothetical protein compare
ABI39_RS08555 -1.1 -4.6 Trk system potassium transporter TrkA compare
ABI39_RS01650 -1.1 -4.2 methylmalonyl-CoA mutase small subunit compare
ABI39_RS06990 -1.1 -6.9 DUF4369 domain-containing protein compare
ABI39_RS11505 -1.0 -0.8 YccF domain-containing protein compare
ABI39_RS16870 -1.0 -2.1 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS16320 -1.0 -1.0 DUF3989 domain-containing protein compare
ABI39_RS11160 -1.0 -1.4 UpxY family transcription antiterminator compare
ABI39_RS12150 -1.0 -2.0 hotdog fold thioesterase compare
ABI39_RS17335 -1.0 -5.5 phosphatidylinositol-4-phosphate 5-kinase compare
ABI39_RS11000 -1.0 -1.1 hypothetical protein compare
ABI39_RS12120 -1.0 -6.2 AMP-binding protein compare
ABI39_RS09195 -1.0 -1.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS14495 -1.0 -4.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
ABI39_RS12810 -1.0 -2.7 hypothetical protein compare
ABI39_RS02480 -1.0 -1.6 DJ-1/PfpI family protein compare
ABI39_RS15265 -1.0 -1.5 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS11490 -1.0 -0.9 hypothetical protein compare
ABI39_RS15430 -1.0 -0.8 hypothetical protein compare
ABI39_RS08850 -1.0 -2.6 toprim domain-containing protein compare
ABI39_RS05650 -1.0 -5.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
ABI39_RS09170 -1.0 -8.1 response regulator compare
ABI39_RS05350 -1.0 -1.8 murein L,D-transpeptidase catalytic domain family protein compare
ABI39_RS22725 -1.0 -1.0 hypothetical protein compare
ABI39_RS16095 -1.0 -1.4 helix-turn-helix domain-containing protein compare


Specific Phenotypes

For 24 genes in this experiment

For carbon source polygalacturonic acid; autoclaved in Phocaeicola dorei CL03T12C01

For carbon source polygalacturonic acid; autoclaved across organisms