Experiment set3S347 for Phocaeicola dorei CL03T12C01

Compare to:

Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS15380 -6.1 -4.2 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
ABI39_RS15365 -5.8 -4.0 altronate dehydratase compare
ABI39_RS02970 -5.1 -8.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS12645 -5.0 -13.2 chorismate synthase compare
ABI39_RS20085 -4.9 -5.8 electron transport complex subunit E compare
ABI39_RS12425 -4.9 -6.7 acyl-CoA carboxylase subunit beta compare
ABI39_RS20070 -4.8 -3.3 UDP-glucose 4-epimerase GalE compare
ABI39_RS12420 -4.8 -4.6 OadG family protein compare
ABI39_RS04685 -4.6 -5.4 acetylglutamate kinase compare
ABI39_RS11830 -4.5 -4.4 ATP phosphoribosyltransferase compare
ABI39_RS10495 -4.5 -8.0 prephenate dehydrogenase compare
ABI39_RS20100 -4.5 -6.8 electron transport complex subunit RsxC compare
ABI39_RS06010 -4.4 -7.2 polysaccharide deacetylase family protein compare
ABI39_RS02875 -4.4 -9.2 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS02975 -4.3 -9.9 argininosuccinate synthase compare
ABI39_RS02870 -4.3 -7.3 acetylornithine carbamoyltransferase compare
ABI39_RS02980 -4.2 -8.5 N-acetyltransferase compare
ABI39_RS04695 -4.2 -5.5 shikimate kinase compare
ABI39_RS12770 -4.2 -2.9 hypothetical protein compare
ABI39_RS20090 -4.1 -5.7 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS20105 -4.1 -4.9 Fe-S cluster domain-containing protein compare
ABI39_RS16905 -4.1 -10.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS21060 -4.1 -6.4 anthranilate phosphoribosyltransferase compare
ABI39_RS10510 -4.1 -8.6 prephenate dehydratase compare
ABI39_RS20080 -4.0 -6.1 electron transport complex subunit RsxA compare
ABI39_RS10505 -4.0 -10.4 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS19950 -4.0 -2.8 diaminopimelate decarboxylase compare
ABI39_RS09040 -3.9 -11.1 MFS transporter compare
ABI39_RS06995 -3.9 -7.0 tetratricopeptide repeat protein compare
ABI39_RS09685 -3.9 -2.7 hypothetical protein compare
ABI39_RS02960 -3.8 -8.2 pyrroline-5-carboxylate reductase compare
ABI39_RS20095 -3.7 -8.3 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS17195 -3.7 -8.8 hypothetical protein compare
ABI39_RS15375 -3.7 -8.7 sugar kinase compare
ABI39_RS08195 -3.7 -5.6 hypothetical protein compare
ABI39_RS11845 -3.7 -7.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS07095 -3.6 -14.7 argininosuccinate lyase compare
ABI39_RS12735 -3.5 -6.2 ketol-acid reductoisomerase compare
ABI39_RS09845 -3.5 -2.4 (d)CMP kinase compare
ABI39_RS18330 -3.5 -8.3 PD40 domain-containing protein compare
ABI39_RS01415 -3.5 -2.4 branched-chain amino acid aminotransferase compare
ABI39_RS21075 -3.5 -4.2 tryptophan synthase subunit alpha compare
ABI39_RS10260 -3.4 -8.7 adenylosuccinate synthase compare
ABI39_RS13185 -3.4 -2.3 manganese efflux pump compare
ABI39_RS15480 -3.3 -6.7 tagaturonate reductase compare
ABI39_RS15475 -3.3 -8.8 glucuronate isomerase compare
ABI39_RS22955 -3.3 -3.8 hypothetical protein compare
ABI39_RS12415 -3.3 -3.4 biotin/lipoyl-binding protein compare
ABI39_RS11835 -3.3 -5.4 histidinol dehydrogenase compare
ABI39_RS12665 -3.2 -7.4 shikimate dehydrogenase compare
ABI39_RS21045 -3.2 -5.4 tryptophan synthase subunit beta compare
ABI39_RS02880 -3.2 -8.7 glutamate 5-kinase compare
ABI39_RS02140 -3.2 -2.8 TetR/AcrR family transcriptional regulator compare
ABI39_RS17950 -3.2 -2.2 Crp/Fnr family transcriptional regulator compare
ABI39_RS18745 -3.2 -2.2 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS02315 -3.2 -8.6 IMP dehydrogenase compare
ABI39_RS19385 -3.2 -3.0 hypothetical protein compare
ABI39_RS10205 -3.1 -4.1 3-isopropylmalate dehydratase small subunit compare
ABI39_RS15410 -3.1 -5.3 DUF4296 domain-containing protein compare
ABI39_RS11840 -3.1 -4.6 histidinol-phosphate transaminase compare
ABI39_RS12720 -3.0 -10.0 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS10110 -3.0 -9.6 S9 family peptidase compare
ABI39_RS16910 -3.0 -7.4 3-phosphoglycerate dehydrogenase compare
ABI39_RS01360 -3.0 -6.3 hypothetical protein compare
ABI39_RS14465 -3.0 -7.0 hypothetical protein compare
ABI39_RS08305 -2.9 -6.5 DUF4831 family protein compare
ABI39_RS07790 -2.9 -6.3 M20 family metallo-hydrolase compare
ABI39_RS00205 -2.9 -2.8 phosphoglucosamine mutase compare
ABI39_RS07005 -2.9 -5.4 type II 3-dehydroquinate dehydratase compare
ABI39_RS19925 -2.9 -7.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS17175 -2.8 -3.3 tetratricopeptide repeat protein compare
ABI39_RS19985 -2.8 -2.3 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS06380 -2.7 -7.3 GH3 auxin-responsive promoter family protein compare
ABI39_RS12715 -2.6 -9.9 dihydroxy-acid dehydratase compare
ABI39_RS10500 -2.6 -4.4 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS01730 -2.6 -5.2 electron transfer flavoprotein subunit alpha/FixB family protein compare
ABI39_RS14030 -2.6 -4.3 MFS transporter compare
ABI39_RS03005 -2.6 -5.5 rhamnulose-1-phosphate aldolase compare
ABI39_RS12675 -2.6 -5.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS17140 -2.6 -1.7 AAA family ATPase compare
ABI39_RS21065 -2.6 -4.9 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS10435 -2.5 -7.2 cofactor-independent phosphoglycerate mutase compare
ABI39_RS05660 -2.5 -7.0 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS16885 -2.5 -2.4 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS19945 -2.5 -7.9 aspartate kinase compare
ABI39_RS00770 -2.5 -11.4 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS19930 -2.5 -3.3 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS11405 -2.5 -7.3 hypothetical protein compare
ABI39_RS17640 -2.5 -4.1 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS21050 -2.5 -5.3 anthranilate synthase component I family protein compare
ABI39_RS16895 -2.5 -2.9 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS10210 -2.4 -8.0 2-isopropylmalate synthase compare
ABI39_RS02290 -2.4 -3.6 hypothetical protein compare
ABI39_RS14560 -2.4 -2.8 aspartate 1-decarboxylase compare
ABI39_RS09230 -2.4 -1.7 hypothetical protein compare
ABI39_RS17150 -2.4 -2.3 hypothetical protein compare
ABI39_RS07090 -2.4 -2.9 hypothetical protein compare
ABI39_RS10200 -2.4 -9.8 3-isopropylmalate dehydratase large subunit compare
ABI39_RS10195 -2.4 -7.4 2-isopropylmalate synthase compare
ABI39_RS08135 -2.4 -2.8 YicC family protein compare
ABI39_RS08035 -2.4 -1.6 adenylosuccinate lyase compare
ABI39_RS09575 -2.3 -2.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS20110 -2.3 -2.3 SoxR reducing system RseC family protein compare
ABI39_RS19935 -2.2 -3.6 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS06055 -2.2 -3.9 phosphoribosylamine--glycine ligase compare
ABI39_RS10215 -2.2 -10.1 3-isopropylmalate dehydrogenase compare
ABI39_RS18910 -2.2 -2.6 preprotein translocase subunit YajC compare
ABI39_RS09850 -2.2 -3.3 energy transducer TonB compare
ABI39_RS04795 -2.1 -1.8 M28 family peptidase compare
ABI39_RS05175 -2.1 -4.5 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS09670 -2.1 -2.0 cardiolipin synthase compare
ABI39_RS13180 -2.1 -2.1 FAD:protein FMN transferase compare
ABI39_RS10430 -2.1 -8.5 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS16620 -2.1 -1.5 phage integrase SAM-like domain-containing protein compare
ABI39_RS02755 -2.1 -1.4 glycosyltransferase compare
ABI39_RS10440 -2.1 -8.1 threonine synthase compare
ABI39_RS02285 -2.1 -2.6 DNA mismatch repair endonuclease MutL compare
ABI39_RS04860 -2.1 -1.8 HigA family addiction module antidote protein compare
ABI39_RS11930 -2.1 -3.1 recombinase RecA compare
ABI39_RS01735 -2.1 -4.7 acyl-CoA dehydrogenase family protein compare
ABI39_RS01655 -2.0 -8.0 methylmalonyl-CoA mutase compare
ABI39_RS17170 -2.0 -1.4 protein BatD compare
ABI39_RS04970 -2.0 -3.5 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS14235 -2.0 -3.3 hypothetical protein compare
ABI39_RS17420 -2.0 -6.3 serine hydroxymethyltransferase compare
ABI39_RS00515 -2.0 -2.3 hypothetical protein compare
ABI39_RS16880 -1.9 -2.3 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS09460 -1.9 -2.3 histidine phosphatase family protein compare
ABI39_RS16870 -1.9 -2.6 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS01725 -1.9 -3.6 electron transfer flavoprotein subunit beta/FixA family protein compare
ABI39_RS04700 -1.9 -2.9 type I DNA topoisomerase compare
ABI39_RS08055 -1.9 -5.3 zeta toxin family protein compare
ABI39_RS18170 -1.9 -1.8 hypothetical protein compare
ABI39_RS11485 -1.9 -3.2 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS06675 -1.8 -6.5 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS16700 -1.8 -4.2 agmatine deiminase family protein compare
ABI39_RS15415 -1.8 -4.1 hypothetical protein compare
ABI39_RS09855 -1.7 -2.0 polyprenyl synthetase family protein compare
ABI39_RS00410 -1.7 -3.0 response regulator compare
ABI39_RS01650 -1.7 -5.4 methylmalonyl-CoA mutase small subunit compare
ABI39_RS02480 -1.7 -1.9 DJ-1/PfpI family protein compare
ABI39_RS02470 -1.7 -3.3 ATP-dependent DNA helicase RecG compare
ABI39_RS18300 -1.7 -5.4 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
ABI39_RS10085 -1.7 -2.7 enoyl-ACP reductase compare
ABI39_RS06115 -1.6 -5.3 phosphatase PAP2 family protein compare
ABI39_RS08850 -1.6 -2.1 toprim domain-containing protein compare
ABI39_RS14480 -1.6 -5.2 ferrous iron transport protein B compare
ABI39_RS09770 -1.6 -4.9 DUF349 domain-containing protein compare
ABI39_RS09195 -1.6 -2.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS14265 -1.6 -4.6 ATP-dependent dethiobiotin synthetase BioD compare
ABI39_RS12755 -1.6 -1.9 SurA N-terminal domain-containing protein compare
ABI39_RS09830 -1.6 -4.6 methylmalonyl Co-A mutase-associated GTPase MeaB compare
ABI39_RS02350 -1.6 -4.0 ABC transporter permease compare
ABI39_RS16305 -1.5 -1.1 DUF4141 domain-containing protein compare
ABI39_RS06670 -1.5 -7.4 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS19920 -1.5 -4.9 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS06925 -1.5 -6.8 glycosyltransferase compare
ABI39_RS14245 -1.5 -6.9 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS02985 -1.5 -4.8 arginine repressor compare
ABI39_RS12805 -1.5 -2.6 hypothetical protein compare
ABI39_RS11875 -1.5 -4.2 OmpH family outer membrane protein compare
ABI39_RS17160 -1.5 -1.4 VWA domain-containing protein compare
ABI39_RS10870 -1.5 -5.9 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS04885 -1.5 -2.2 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS14260 -1.4 -7.0 malonyl-ACP O-methyltransferase BioC compare
ABI39_RS02965 -1.4 -7.9 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS12150 -1.4 -3.0 hotdog fold thioesterase compare
ABI39_RS09835 -1.4 -3.7 6-phosphofructokinase compare
ABI39_RS06805 -1.4 -2.0 hypothetical protein compare
ABI39_RS08165 -1.3 -1.5 1-deoxy-D-xylulose-5-phosphate reductoisomerase compare
ABI39_RS02355 -1.3 -4.1 ABC transporter ATP-binding protein compare
ABI39_RS15720 -1.3 -2.0 hypothetical protein compare
ABI39_RS14250 -1.3 -3.9 8-amino-7-oxononanoate synthase compare
ABI39_RS04245 -1.3 -1.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS17205 -1.3 -2.0 ATP-dependent Clp protease ATP-binding subunit compare
ABI39_RS06235 -1.3 -4.9 UDP-galactopyranose mutase compare
ABI39_RS07420 -1.3 -2.5 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS16875 -1.3 -1.9 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS15265 -1.2 -1.8 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS13225 -1.2 -1.4 phosphopyruvate hydratase compare
ABI39_RS11650 -1.2 -3.2 galactokinase compare
ABI39_RS21055 -1.2 -3.5 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS09245 -1.2 -6.8 cardiolipin synthase compare
ABI39_RS01990 -1.2 -1.9 transketolase compare
ABI39_RS18385 -1.2 -1.3 helix-turn-helix domain-containing protein compare
ABI39_RS02500 -1.2 -5.7 pyridoxine 5'-phosphate synthase compare
ABI39_RS00520 -1.2 -5.4 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABI39_RS12670 -1.2 -2.3 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
ABI39_RS06250 -1.2 -6.2 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS06940 -1.2 -2.8 LicD family protein compare
ABI39_RS17610 -1.1 -2.0 sensor histidine kinase compare
ABI39_RS02060 -1.1 -3.2 translocation/assembly module TamB domain-containing protein compare
ABI39_RS17980 -1.1 -2.0 large-conductance mechanosensitive channel protein MscL compare
ABI39_RS04690 -1.1 -3.9 biosynthetic arginine decarboxylase compare
ABI39_RS14240 -1.1 -3.1 biotin synthase BioB compare
ABI39_RS07000 -1.1 -1.8 site-specific tyrosine recombinase XerD compare
ABI39_RS06920 -1.1 -3.2 glycosyltransferase compare
ABI39_RS00475 -1.1 -3.2 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS01985 -1.1 -2.9 transketolase compare
ABI39_RS13195 -1.1 -3.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola dorei CL03T12C01 in carbon source experiments

For carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved across organisms