Experiment set3S345 for Phocaeicola dorei CL03T12C01

Compare to:

Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS11000 -5.4 -1.2 hypothetical protein compare
ABI39_RS09685 -4.6 -2.0 hypothetical protein compare
ABI39_RS04695 -4.3 -5.1 shikimate kinase compare
ABI39_RS14560 -4.3 -2.7 aspartate 1-decarboxylase compare
ABI39_RS10200 -4.2 -9.4 3-isopropylmalate dehydratase large subunit compare
ABI39_RS10495 -4.2 -4.8 prephenate dehydrogenase compare
ABI39_RS09845 -4.2 -2.6 (d)CMP kinase compare
ABI39_RS17950 -4.1 -2.2 Crp/Fnr family transcriptional regulator compare
ABI39_RS10500 -4.0 -4.7 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS12770 -4.0 -3.2 hypothetical protein compare
ABI39_RS20095 -4.0 -9.7 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS18745 -4.0 -2.8 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS04795 -4.0 -1.5 M28 family peptidase compare
ABI39_RS20100 -3.8 -8.2 electron transport complex subunit RsxC compare
ABI39_RS12645 -3.7 -9.0 chorismate synthase compare
ABI39_RS07005 -3.7 -4.3 type II 3-dehydroquinate dehydratase compare
ABI39_RS21350 -3.7 -2.2 aspartate--ammonia ligase compare
ABI39_RS12425 -3.6 -7.2 acyl-CoA carboxylase subunit beta compare
ABI39_RS21050 -3.6 -5.4 anthranilate synthase component I family protein compare
ABI39_RS04730 -3.6 -1.1 Lrp/AsnC ligand binding domain-containing protein compare
ABI39_RS16910 -3.6 -8.1 3-phosphoglycerate dehydrogenase compare
ABI39_RS15380 -3.6 -2.0 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
ABI39_RS10215 -3.5 -8.3 3-isopropylmalate dehydrogenase compare
ABI39_RS04245 -3.5 -1.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS10430 -3.4 -8.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS02315 -3.4 -5.6 IMP dehydrogenase compare
ABI39_RS01360 -3.4 -6.4 hypothetical protein compare
ABI39_RS12415 -3.3 -4.0 biotin/lipoyl-binding protein compare
ABI39_RS17140 -3.3 -1.9 AAA family ATPase compare
ABI39_RS20080 -3.3 -4.5 electron transport complex subunit RsxA compare
ABI39_RS19950 -3.3 -5.8 diaminopimelate decarboxylase compare
ABI39_RS03005 -3.3 -5.7 rhamnulose-1-phosphate aldolase compare
ABI39_RS10435 -3.3 -7.3 cofactor-independent phosphoglycerate mutase compare
ABI39_RS13180 -3.2 -2.2 FAD:protein FMN transferase compare
ABI39_RS14465 -3.2 -6.4 hypothetical protein compare
ABI39_RS05660 -3.2 -7.3 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS10260 -3.2 -7.3 adenylosuccinate synthase compare
ABI39_RS12715 -3.2 -6.9 dihydroxy-acid dehydratase compare
ABI39_RS02290 -3.1 -3.5 hypothetical protein compare
ABI39_RS20070 -3.1 -6.2 UDP-glucose 4-epimerase GalE compare
ABI39_RS10205 -3.1 -3.6 3-isopropylmalate dehydratase small subunit compare
ABI39_RS21045 -3.1 -3.2 tryptophan synthase subunit beta compare
ABI39_RS12720 -3.1 -7.9 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS10510 -3.1 -5.4 prephenate dehydratase compare
ABI39_RS10195 -3.1 -8.0 2-isopropylmalate synthase compare
ABI39_RS16905 -3.1 -8.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS11835 -3.1 -4.6 histidinol dehydrogenase compare
ABI39_RS21060 -3.1 -5.6 anthranilate phosphoribosyltransferase compare
ABI39_RS20090 -3.1 -5.8 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS20085 -3.0 -3.8 electron transport complex subunit E compare
ABI39_RS00475 -3.0 -5.1 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS11405 -3.0 -7.0 hypothetical protein compare
ABI39_RS21065 -2.9 -3.8 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS12665 -2.9 -5.2 shikimate dehydrogenase compare
ABI39_RS15375 -2.9 -7.0 sugar kinase compare
ABI39_RS06055 -2.9 -4.9 phosphoribosylamine--glycine ligase compare
ABI39_RS11845 -2.9 -7.3 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS17150 -2.9 -3.9 hypothetical protein compare
ABI39_RS20105 -2.9 -4.8 Fe-S cluster domain-containing protein compare
ABI39_RS04885 -2.9 -2.8 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS06995 -2.9 -4.9 tetratricopeptide repeat protein compare
ABI39_RS02980 -2.8 -4.7 N-acetyltransferase compare
ABI39_RS02960 -2.8 -7.4 pyrroline-5-carboxylate reductase compare
ABI39_RS12430 -2.8 -0.8 methylmalonyl-CoA epimerase compare
ABI39_RS10505 -2.8 -7.7 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS16880 -2.8 -3.7 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS06010 -2.8 -4.6 polysaccharide deacetylase family protein compare
ABI39_RS12755 -2.7 -1.9 SurA N-terminal domain-containing protein compare
ABI39_RS17170 -2.7 -1.8 protein BatD compare
ABI39_RS10110 -2.7 -8.6 S9 family peptidase compare
ABI39_RS02975 -2.7 -6.0 argininosuccinate synthase compare
ABI39_RS15265 -2.7 -2.7 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS02870 -2.7 -7.3 acetylornithine carbamoyltransferase compare
ABI39_RS02140 -2.7 -1.6 TetR/AcrR family transcriptional regulator compare
ABI39_RS15430 -2.6 -1.1 hypothetical protein compare
ABI39_RS14030 -2.6 -3.5 MFS transporter compare
ABI39_RS04685 -2.6 -4.1 acetylglutamate kinase compare
ABI39_RS08305 -2.6 -4.2 DUF4831 family protein compare
ABI39_RS01650 -2.6 -5.6 methylmalonyl-CoA mutase small subunit compare
ABI39_RS17195 -2.6 -7.3 hypothetical protein compare
ABI39_RS06380 -2.6 -6.0 GH3 auxin-responsive promoter family protein compare
ABI39_RS11485 -2.6 -3.3 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS02755 -2.6 -1.6 glycosyltransferase compare
ABI39_RS12735 -2.5 -5.7 ketol-acid reductoisomerase compare
ABI39_RS02970 -2.5 -4.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS10440 -2.5 -4.7 threonine synthase compare
ABI39_RS10640 -2.5 -5.2 serine dehydratase subunit alpha family protein compare
ABI39_RS10210 -2.5 -6.1 2-isopropylmalate synthase compare
ABI39_RS09575 -2.5 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS15365 -2.5 -3.3 altronate dehydratase compare
ABI39_RS14480 -2.4 -7.3 ferrous iron transport protein B compare
ABI39_RS15475 -2.4 -8.3 glucuronate isomerase compare
ABI39_RS07790 -2.4 -5.7 M20 family metallo-hydrolase compare
ABI39_RS15410 -2.4 -5.5 DUF4296 domain-containing protein compare
ABI39_RS11840 -2.4 -4.0 histidinol-phosphate transaminase compare
ABI39_RS02880 -2.4 -5.9 glutamate 5-kinase compare
ABI39_RS16870 -2.4 -3.2 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS13845 -2.3 -0.9 histone H1 compare
ABI39_RS08035 -2.3 -2.7 adenylosuccinate lyase compare
ABI39_RS19930 -2.3 -5.3 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS11830 -2.3 -2.7 ATP phosphoribosyltransferase compare
ABI39_RS12675 -2.3 -5.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS00515 -2.3 -2.2 hypothetical protein compare
ABI39_RS07095 -2.3 -9.5 argininosuccinate lyase compare
ABI39_RS21190 -2.3 -2.7 dihydrodipicolinate synthase family protein compare
ABI39_RS22260 -2.3 -2.7 DUF3873 family protein compare
ABI39_RS21075 -2.2 -3.8 tryptophan synthase subunit alpha compare
ABI39_RS06115 -2.2 -6.0 phosphatase PAP2 family protein compare
ABI39_RS00405 -2.2 -14.3 phosphoribosylformylglycinamidine synthase compare
ABI39_RS16895 -2.2 -3.1 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS19925 -2.1 -4.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS02470 -2.1 -4.1 ATP-dependent DNA helicase RecG compare
ABI39_RS00205 -2.1 -3.7 phosphoglucosamine mutase compare
ABI39_RS17175 -2.1 -4.0 tetratricopeptide repeat protein compare
ABI39_RS18330 -2.0 -6.5 PD40 domain-containing protein compare
ABI39_RS09195 -2.0 -2.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS01655 -2.0 -6.0 methylmalonyl-CoA mutase compare
ABI39_RS20395 -1.9 -2.2 DedA family protein compare
ABI39_RS18910 -1.9 -1.8 preprotein translocase subunit YajC compare
ABI39_RS06235 -1.9 -4.6 UDP-galactopyranose mutase compare
ABI39_RS08185 -1.9 -3.9 hemolysin III family protein compare
ABI39_RS02875 -1.9 -5.6 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS04970 -1.8 -3.2 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS09670 -1.8 -2.0 cardiolipin synthase compare
ABI39_RS06920 -1.8 -3.6 glycosyltransferase compare
ABI39_RS15480 -1.8 -4.2 tagaturonate reductase compare
ABI39_RS16040 -1.8 -0.8 hypothetical protein compare
ABI39_RS00770 -1.8 -8.4 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS09460 -1.8 -1.6 histidine phosphatase family protein compare
ABI39_RS16875 -1.8 -2.7 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS15650 -1.7 -5.0 cobyrinate a,c-diamide synthase compare
ABI39_RS15665 -1.7 -4.4 pyridoxal phosphate-dependent class II aminotransferase compare
ABI39_RS19985 -1.7 -1.2 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS06925 -1.7 -6.2 glycosyltransferase compare
ABI39_RS08145 -1.7 -1.4 DUF4290 domain-containing protein compare
ABI39_RS02285 -1.7 -1.8 DNA mismatch repair endonuclease MutL compare
ABI39_RS18170 -1.7 -1.2 hypothetical protein compare
ABI39_RS06070 -1.7 -1.3 hypothetical protein compare
ABI39_RS08195 -1.7 -3.2 hypothetical protein compare
ABI39_RS21200 -1.6 -3.0 MFS transporter compare
ABI39_RS08135 -1.6 -1.1 YicC family protein compare
ABI39_RS05465 -1.6 -1.2 chloramphenicol acetyltransferase compare
ABI39_RS08850 -1.6 -2.2 toprim domain-containing protein compare
ABI39_RS09850 -1.6 -2.2 energy transducer TonB compare
ABI39_RS10085 -1.6 -2.9 enoyl-ACP reductase compare
ABI39_RS12420 -1.6 -2.9 OadG family protein compare
ABI39_RS10870 -1.6 -6.5 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS01415 -1.6 -2.4 branched-chain amino acid aminotransferase compare
ABI39_RS09040 -1.6 -7.1 MFS transporter compare
ABI39_RS02355 -1.6 -3.2 ABC transporter ATP-binding protein compare
ABI39_RS04280 -1.6 -2.5 DUF4292 domain-containing protein compare
ABI39_RS06670 -1.5 -5.8 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS17420 -1.5 -4.0 serine hydroxymethyltransferase compare
ABI39_RS09830 -1.5 -4.0 methylmalonyl Co-A mutase-associated GTPase MeaB compare
ABI39_RS12980 -1.5 -2.2 HAD family hydrolase compare
ABI39_RS01300 -1.5 -5.1 NADP-specific glutamate dehydrogenase compare
ABI39_RS19385 -1.5 -2.0 hypothetical protein compare
ABI39_RS08175 -1.5 -2.3 anaerobic ribonucleoside-triphosphate reductase activating protein compare
ABI39_RS15765 -1.5 -1.0 hypothetical protein compare
ABI39_RS20110 -1.4 -1.1 SoxR reducing system RseC family protein compare
ABI39_RS18740 -1.4 -3.6 ATP-binding protein compare
ABI39_RS06620 -1.4 -1.4 HU family DNA-binding protein compare
ABI39_RS06675 -1.4 -5.6 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS00930 -1.4 -7.1 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS19425 -1.3 -2.0 hypothetical protein compare
ABI39_RS19935 -1.3 -3.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS04230 -1.3 -3.3 RNA polymerase factor sigma-54 compare
ABI39_RS15320 -1.3 -5.6 PorT family protein compare
ABI39_RS01990 -1.3 -2.5 transketolase compare
ABI39_RS04145 -1.3 -1.2 transcription elongation factor GreA compare
ABI39_RS04745 -1.3 -1.2 hypothetical protein compare
ABI39_RS10650 -1.3 -7.9 AraC family transcriptional regulator compare
ABI39_RS09855 -1.3 -2.1 polyprenyl synthetase family protein compare
ABI39_RS07090 -1.3 -1.1 hypothetical protein compare
ABI39_RS06220 -1.3 -5.7 glycosyltransferase family 2 protein compare
ABI39_RS04930 -1.3 -2.0 helix-turn-helix transcriptional regulator compare
ABI39_RS11635 -1.3 -3.0 NUDIX hydrolase compare
ABI39_RS17180 -1.3 -2.8 phosphatase PAP2 family protein compare
ABI39_RS00920 -1.3 -5.2 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS20355 -1.3 -6.8 carboxypeptidase-like regulatory domain-containing protein compare
ABI39_RS18390 -1.2 -1.0 DUF3987 domain-containing protein compare
ABI39_RS02530 -1.2 -1.0 winged helix-turn-helix domain-containing protein compare
ABI39_RS02480 -1.2 -2.1 DJ-1/PfpI family protein compare
ABI39_RS18300 -1.2 -3.6 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
ABI39_RS11630 -1.2 -3.1 L-ribulose-5-phosphate 4-epimerase compare
ABI39_RS21055 -1.2 -2.3 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS03105 -1.2 -0.9 MobC family plasmid mobilization relaxosome protein compare
ABI39_RS15525 -1.2 -4.1 precorrin-3B C(17)-methyltransferase compare
ABI39_RS14645 -1.2 -2.8 sigma-70 family RNA polymerase sigma factor compare
ABI39_RS14255 -1.1 -1.4 DUF452 family protein compare
ABI39_RS00800 -1.1 -8.2 response regulator compare
ABI39_RS12725 -1.1 -2.7 acetolactate synthase small subunit compare
ABI39_RS12975 -1.1 -3.0 flippase-like domain-containing protein compare
ABI39_RS10250 -1.1 -1.5 DNA alkylation repair protein compare
ABI39_RS07890 -1.1 -0.8 hypothetical protein compare
ABI39_RS19485 -1.1 -0.9 hypothetical protein compare
ABI39_RS15670 -1.1 -4.8 cobalamin biosynthesis protein CobD compare
ABI39_RS16620 -1.1 -0.6 phage integrase SAM-like domain-containing protein compare
ABI39_RS03130 -1.1 -4.1 hypothetical protein compare
ABI39_RS14715 -1.1 -1.4 RidA family protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered in Phocaeicola dorei CL03T12C01

For carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered across organisms