Experiment set3S344 for Phocaeicola dorei CL03T12C01

Compare to:

Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS15380 -6.1 -1.6 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
ABI39_RS03005 -5.3 -5.1 rhamnulose-1-phosphate aldolase compare
ABI39_RS21065 -5.1 -4.7 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS11830 -5.0 -2.0 ATP phosphoribosyltransferase compare
ABI39_RS16905 -5.0 -10.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS12715 -4.9 -8.3 dihydroxy-acid dehydratase compare
ABI39_RS02970 -4.9 -6.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS21060 -4.7 -7.2 anthranilate phosphoribosyltransferase compare
ABI39_RS21075 -4.6 -4.0 tryptophan synthase subunit alpha compare
ABI39_RS12735 -4.5 -6.2 ketol-acid reductoisomerase compare
ABI39_RS02975 -4.5 -5.5 argininosuccinate synthase compare
ABI39_RS15375 -4.4 -9.3 sugar kinase compare
ABI39_RS10260 -4.3 -7.0 adenylosuccinate synthase compare
ABI39_RS11405 -4.3 -8.3 hypothetical protein compare
ABI39_RS10215 -4.3 -9.5 3-isopropylmalate dehydrogenase compare
ABI39_RS02980 -4.2 -5.3 N-acetyltransferase compare
ABI39_RS10205 -4.2 -3.5 3-isopropylmalate dehydratase small subunit compare
ABI39_RS06380 -4.1 -6.0 GH3 auxin-responsive promoter family protein compare
ABI39_RS20085 -4.1 -4.0 electron transport complex subunit E compare
ABI39_RS11840 -4.1 -2.7 histidinol-phosphate transaminase compare
ABI39_RS20070 -4.1 -5.6 UDP-glucose 4-epimerase GalE compare
ABI39_RS02315 -4.1 -7.9 IMP dehydrogenase compare
ABI39_RS10510 -4.1 -7.2 prephenate dehydratase compare
ABI39_RS07790 -4.1 -5.2 M20 family metallo-hydrolase compare
ABI39_RS19385 -4.1 -1.4 hypothetical protein compare
ABI39_RS16910 -4.1 -7.8 3-phosphoglycerate dehydrogenase compare
ABI39_RS00475 -4.0 -3.5 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS02870 -4.0 -5.6 acetylornithine carbamoyltransferase compare
ABI39_RS20095 -4.0 -8.3 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS12720 -4.0 -11.7 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS20080 -4.0 -4.6 electron transport complex subunit RsxA compare
ABI39_RS05660 -3.9 -6.6 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS11835 -3.9 -3.8 histidinol dehydrogenase compare
ABI39_RS04695 -3.9 -4.1 shikimate kinase compare
ABI39_RS10640 -3.9 -9.3 serine dehydratase subunit alpha family protein compare
ABI39_RS10495 -3.9 -5.4 prephenate dehydrogenase compare
ABI39_RS08195 -3.9 -3.6 hypothetical protein compare
ABI39_RS07095 -3.9 -15.2 argininosuccinate lyase compare
ABI39_RS07005 -3.9 -3.7 type II 3-dehydroquinate dehydratase compare
ABI39_RS15410 -3.9 -6.0 DUF4296 domain-containing protein compare
ABI39_RS12770 -3.8 -1.5 hypothetical protein compare
ABI39_RS15710 -3.8 -0.8 hypothetical protein compare
ABI39_RS10430 -3.8 -11.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS20105 -3.7 -3.7 Fe-S cluster domain-containing protein compare
ABI39_RS10200 -3.7 -10.4 3-isopropylmalate dehydratase large subunit compare
ABI39_RS10435 -3.7 -7.7 cofactor-independent phosphoglycerate mutase compare
ABI39_RS17195 -3.6 -9.9 hypothetical protein compare
ABI39_RS06995 -3.6 -5.8 tetratricopeptide repeat protein compare
ABI39_RS04685 -3.6 -3.9 acetylglutamate kinase compare
ABI39_RS06055 -3.6 -5.9 phosphoribosylamine--glycine ligase compare
ABI39_RS02880 -3.5 -7.6 glutamate 5-kinase compare
ABI39_RS21045 -3.5 -4.3 tryptophan synthase subunit beta compare
ABI39_RS12645 -3.5 -12.9 chorismate synthase compare
ABI39_RS10505 -3.5 -8.9 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS10500 -3.4 -3.2 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS02875 -3.4 -7.4 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS20100 -3.4 -6.0 electron transport complex subunit RsxC compare
ABI39_RS20090 -3.4 -5.3 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS14030 -3.4 -2.4 MFS transporter compare
ABI39_RS09685 -3.4 -1.0 hypothetical protein compare
ABI39_RS10440 -3.4 -5.7 threonine synthase compare
ABI39_RS12425 -3.3 -8.1 acyl-CoA carboxylase subunit beta compare
ABI39_RS08185 -3.3 -4.0 hemolysin III family protein compare
ABI39_RS11845 -3.3 -5.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS17420 -3.3 -6.4 serine hydroxymethyltransferase compare
ABI39_RS19925 -3.3 -5.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS09850 -3.3 -2.3 energy transducer TonB compare
ABI39_RS00405 -3.3 -15.7 phosphoribosylformylglycinamidine synthase compare
ABI39_RS21050 -3.3 -4.8 anthranilate synthase component I family protein compare
ABI39_RS14465 -3.3 -6.5 hypothetical protein compare
ABI39_RS14085 -3.2 -0.7 hypothetical protein compare
ABI39_RS10210 -3.2 -8.0 2-isopropylmalate synthase compare
ABI39_RS06010 -3.2 -4.5 polysaccharide deacetylase family protein compare
ABI39_RS01360 -3.1 -5.3 hypothetical protein compare
ABI39_RS06675 -3.1 -4.7 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS10110 -3.0 -9.2 S9 family peptidase compare
ABI39_RS00770 -3.0 -9.4 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS20110 -3.0 -2.7 SoxR reducing system RseC family protein compare
ABI39_RS12415 -3.0 -2.2 biotin/lipoyl-binding protein compare
ABI39_RS14560 -3.0 -1.7 aspartate 1-decarboxylase compare
ABI39_RS01415 -3.0 -1.4 branched-chain amino acid aminotransferase compare
ABI39_RS09845 -3.0 -1.3 (d)CMP kinase compare
ABI39_RS18330 -2.9 -7.9 PD40 domain-containing protein compare
ABI39_RS15760 -2.9 -0.6 hypothetical protein compare
ABI39_RS10195 -2.9 -5.7 2-isopropylmalate synthase compare
ABI39_RS12675 -2.8 -3.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS03105 -2.8 -0.7 MobC family plasmid mobilization relaxosome protein compare
ABI39_RS18745 -2.8 -2.7 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS02960 -2.8 -6.8 pyrroline-5-carboxylate reductase compare
ABI39_RS15475 -2.8 -7.6 glucuronate isomerase compare
ABI39_RS04795 -2.7 -0.7 M28 family peptidase compare
ABI39_RS00205 -2.7 -2.4 phosphoglucosamine mutase compare
ABI39_RS10105 -2.7 -2.2 lipoyl synthase compare
ABI39_RS19950 -2.7 -3.3 diaminopimelate decarboxylase compare
ABI39_RS02290 -2.6 -1.9 hypothetical protein compare
ABI39_RS19930 -2.6 -2.7 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS09515 -2.6 -2.2 nucleoside deaminase compare
ABI39_RS11485 -2.4 -2.4 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS15365 -2.4 -1.9 altronate dehydratase compare
ABI39_RS12665 -2.4 -5.0 shikimate dehydrogenase compare
ABI39_RS17950 -2.4 -1.2 Crp/Fnr family transcriptional regulator compare
ABI39_RS10870 -2.4 -7.7 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS17175 -2.3 -2.9 tetratricopeptide repeat protein compare
ABI39_RS02140 -2.3 -1.0 TetR/AcrR family transcriptional regulator compare
ABI39_RS17150 -2.3 -1.3 hypothetical protein compare
ABI39_RS09195 -2.3 -2.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS16620 -2.2 -0.6 phage integrase SAM-like domain-containing protein compare
ABI39_RS19935 -2.2 -4.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS06920 -2.2 -3.3 glycosyltransferase compare
ABI39_RS06670 -2.2 -8.8 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS06115 -2.2 -5.8 phosphatase PAP2 family protein compare
ABI39_RS16885 -2.1 -1.3 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS00800 -2.1 -16.3 response regulator compare
ABI39_RS08305 -2.1 -4.1 DUF4831 family protein compare
ABI39_RS13180 -2.1 -1.3 FAD:protein FMN transferase compare
ABI39_RS06235 -2.1 -7.3 UDP-galactopyranose mutase compare
ABI39_RS05635 -2.1 -0.4 class I SAM-dependent methyltransferase compare
ABI39_RS01655 -2.1 -6.5 methylmalonyl-CoA mutase compare
ABI39_RS15320 -2.1 -7.4 PorT family protein compare
ABI39_RS20855 -2.0 -1.2 hypothetical protein compare
ABI39_RS16385 -2.0 -1.2 hypothetical protein compare
ABI39_RS22225 -2.0 -0.7 hypothetical protein compare
ABI39_RS09575 -2.0 -0.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS00515 -2.0 -1.5 hypothetical protein compare
ABI39_RS16130 -2.0 -1.0 DUF3945 domain-containing protein compare
ABI39_RS01650 -1.9 -5.1 methylmalonyl-CoA mutase small subunit compare
ABI39_RS03560 -1.9 -1.5 RNA polymerase sigma factor compare
ABI39_RS04280 -1.9 -2.5 DUF4292 domain-containing protein compare
ABI39_RS10650 -1.9 -10.9 AraC family transcriptional regulator compare
ABI39_RS17140 -1.9 -1.0 AAA family ATPase compare
ABI39_RS02285 -1.9 -1.6 DNA mismatch repair endonuclease MutL compare
ABI39_RS16435 -1.8 -1.8 hypothetical protein compare
ABI39_RS14480 -1.8 -5.6 ferrous iron transport protein B compare
ABI39_RS19945 -1.8 -7.3 aspartate kinase compare
ABI39_RS04690 -1.8 -6.7 biosynthetic arginine decarboxylase compare
ABI39_RS14340 -1.8 -1.0 nucleotidyltransferase domain-containing protein compare
ABI39_RS19920 -1.8 -2.9 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS08165 -1.8 -0.6 1-deoxy-D-xylulose-5-phosphate reductoisomerase compare
ABI39_RS06620 -1.8 -0.9 HU family DNA-binding protein compare
ABI39_RS02965 -1.7 -6.4 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS08815 -1.7 -1.5 DUF4141 domain-containing protein compare
ABI39_RS02500 -1.7 -4.7 pyridoxine 5'-phosphate synthase compare
ABI39_RS02460 -1.7 -1.1 peptidoglycan DD-metalloendopeptidase family protein compare
ABI39_RS06220 -1.7 -5.9 glycosyltransferase family 2 protein compare
ABI39_RS00935 -1.7 -11.7 TonB-dependent receptor compare
ABI39_RS09245 -1.7 -7.4 cardiolipin synthase compare
ABI39_RS18385 -1.7 -0.7 helix-turn-helix domain-containing protein compare
ABI39_RS15480 -1.7 -3.4 tagaturonate reductase compare
ABI39_RS19985 -1.7 -0.8 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS05280 -1.6 -7.1 S41 family peptidase compare
ABI39_RS21350 -1.6 -1.3 aspartate--ammonia ligase compare
ABI39_RS03320 -1.6 -6.1 FecR domain-containing protein compare
ABI39_RS04930 -1.6 -2.5 helix-turn-helix transcriptional regulator compare
ABI39_RS04860 -1.6 -1.3 HigA family addiction module antidote protein compare
ABI39_RS13185 -1.6 -0.7 manganese efflux pump compare
ABI39_RS06925 -1.6 -6.1 glycosyltransferase compare
ABI39_RS15920 -1.6 -2.0 type II toxin-antitoxin system HigB family toxin compare
ABI39_RS12170 -1.6 -0.5 MarR family transcriptional regulator compare
ABI39_RS04145 -1.6 -0.5 transcription elongation factor GreA compare
ABI39_RS04245 -1.6 -0.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS17790 -1.6 -0.6 hypothetical protein compare
ABI39_RS12420 -1.6 -1.8 OadG family protein compare
ABI39_RS14245 -1.6 -6.1 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS01905 -1.6 -1.5 [FeFe] hydrogenase H-cluster radical SAM maturase HydE compare
ABI39_RS02830 -1.5 -1.5 RNA-binding protein compare
ABI39_RS12430 -1.5 -0.4 methylmalonyl-CoA epimerase compare
ABI39_RS11000 -1.5 -0.6 hypothetical protein compare
ABI39_RS15415 -1.5 -2.4 hypothetical protein compare
ABI39_RS22035 -1.5 -1.3 DEAD/DEAH box helicase family protein compare
ABI39_RS22820 -1.5 -0.4 hypothetical protein compare
ABI39_RS07090 -1.5 -1.1 hypothetical protein compare
ABI39_RS00920 -1.5 -8.2 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS00805 -1.5 -2.8 L-rhamnose mutarotase compare
ABI39_RS12565 -1.5 -2.0 hypothetical protein compare
ABI39_RS20860 -1.5 -0.7 HU family DNA-binding protein compare
ABI39_RS17465 -1.5 -5.9 DUF3078 domain-containing protein compare
ABI39_RS06250 -1.5 -6.9 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS17745 -1.5 -0.8 sulfur carrier protein ThiS compare
ABI39_RS18390 -1.5 -0.7 DUF3987 domain-containing protein compare
ABI39_RS09915 -1.5 -1.1 DUF5056 domain-containing protein compare
ABI39_RS02350 -1.5 -2.6 ABC transporter permease compare
ABI39_RS09040 -1.5 -6.2 MFS transporter compare
ABI39_RS12500 -1.4 -1.5 class I SAM-dependent methyltransferase compare
ABI39_RS16880 -1.4 -1.6 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS00925 -1.4 -10.3 SusC/RagA family TonB-linked outer membrane protein compare
ABI39_RS23090 -1.4 -1.2 hypothetical protein compare
ABI39_RS03565 -1.4 -1.0 hypothetical protein compare
ABI39_RS15665 -1.4 -2.8 pyridoxal phosphate-dependent class II aminotransferase compare
ABI39_RS03110 -1.4 -0.9 hypothetical protein compare
ABI39_RS07855 -1.4 -0.7 helix-turn-helix domain-containing protein compare
ABI39_RS00930 -1.4 -8.1 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS20355 -1.4 -7.0 carboxypeptidase-like regulatory domain-containing protein compare
ABI39_RS07735 -1.4 -2.0 phosphatase compare
ABI39_RS22950 -1.4 -1.2 hypothetical protein compare
ABI39_RS04420 -1.4 -0.9 hypothetical protein compare
ABI39_RS17160 -1.4 -0.7 VWA domain-containing protein compare
ABI39_RS12515 -1.4 -0.9 hypothetical protein compare
ABI39_RS01725 -1.4 -2.0 electron transfer flavoprotein subunit beta/FixA family protein compare
ABI39_RS01250 -1.4 -0.8 hypothetical protein compare
ABI39_RS08480 -1.4 -0.4 histidine kinase compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved in Phocaeicola dorei CL03T12C01

For carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved across organisms