Experiment set3S339 for Erwinia tracheiphila SCR3

Compare to:

Experiment:PE, population C11, passage 1 (PE-S-C11-P1)

200 most important genes:

  gene name fitness t score description  
LU632_RS15245 purE -6.3 -2.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
LU632_RS16115 sdhC -6.3 -3.9 succinate dehydrogenase cytochrome b556 subunit compare
LU632_RS15425 rpoE -5.8 -10.4 RNA polymerase sigma factor RpoE compare
LU632_RS07865 purF -5.7 -8.7 amidophosphoribosyltransferase compare
LU632_RS09955 pyrD -5.6 -5.5 quinone-dependent dihydroorotate dehydrogenase compare
LU632_RS08815 -5.4 -2.9 colanic acid biosynthesis glycosyltransferase WcaL compare
LU632_RS02755 carA -5.4 -5.2 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
LU632_RS23980 tatC -5.3 -9.1 Sec-independent protein translocase subunit TatC compare
LU632_RS21755 -5.3 -9.6 adenylosuccinate synthase compare
LU632_RS12500 pyrF -5.3 -3.6 orotidine-5'-phosphate decarboxylase compare
LU632_RS02100 -5.2 -8.7 hemolysin family protein compare
LU632_RS06615 ptsI -5.2 -8.7 phosphoenolpyruvate-protein phosphotransferase PtsI compare
LU632_RS17975 purL -5.1 -6.0 phosphoribosylformylglycinamidine synthase compare
LU632_RS10340 pyrC -5.0 -3.5 dihydroorotase compare
LU632_RS02750 carB -4.9 -3.4 carbamoyl-phosphate synthase large subunit compare
LU632_RS20950 pyrB -4.9 -5.8 aspartate carbamoyltransferase compare
LU632_RS01015 purD -4.9 -3.4 phosphoribosylamine--glycine ligase compare
LU632_RS16100 -4.8 -2.9 succinate dehydrogenase iron-sulfur subunit compare
LU632_RS08775 -4.8 -5.4 protein tyrosine phosphatase compare
LU632_RS16110 sdhD -4.7 -4.6 succinate dehydrogenase membrane anchor subunit compare
LU632_RS02140 -4.7 -1.7 ribosome-associated protein compare
LU632_RS08275 purM -4.6 -4.5 phosphoribosylformylglycinamidine cyclo-ligase compare
LU632_RS03310 -4.6 -14.8 sucrose-6-phosphate hydrolase compare
LU632_RS06635 zipA -4.5 -3.7 cell division protein ZipA compare
LU632_RS09915 ompC -4.4 -6.8 porin OmpC compare
LU632_RS09475 mntR -4.4 -2.7 manganese-binding transcriptional regulator MntR compare
LU632_RS21360 degS -4.4 -12.2 outer membrane-stress sensor serine endopeptidase DegS compare
LU632_RS05960 sdhE -4.4 -3.5 FAD assembly factor SdhE compare
LU632_RS19275 ftsE -4.4 -5.4 cell division ATP-binding protein FtsE compare
LU632_RS08790 -4.4 -7.3 EpsG family protein compare
LU632_RS19815 gmhB -4.4 -1.5 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
LU632_RS08820 -4.2 -7.1 lipopolysaccharide biosynthesis protein compare
LU632_RS16105 sdhA -4.2 -5.8 succinate dehydrogenase flavoprotein subunit compare
LU632_RS16415 tatE -4.2 -0.8 twin-arginine translocase subunit TatE compare
LU632_RS16485 arnA -4.1 -11.0 bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA compare
LU632_RS16495 arnB -4.1 -7.4 UDP-4-amino-4-deoxy-L-arabinose aminotransferase compare
LU632_RS08785 -4.0 -6.4 glycosyltransferase family 2 protein compare
LU632_RS08780 wzc -3.9 -12.4 tyrosine-protein kinase Wzc compare
LU632_RS22940 ompR -3.9 -6.0 two-component system response regulator OmpR compare
LU632_RS03210 -3.9 -2.5 EscI/YscI/HrpB family type III secretion system inner rod protein compare
LU632_RS16090 odhB -3.9 -1.7 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
LU632_RS08770 -3.8 -8.1 polysaccharide export protein compare
LU632_RS22015 pyrE -3.8 -2.6 orotate phosphoribosyltransferase compare
LU632_RS15765 -3.8 -0.7 IS481 family transposase compare
LU632_RS21235 mlaD -3.8 -5.9 outer membrane lipid asymmetry maintenance protein MlaD compare
LU632_RS19615 argC -3.8 -9.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
LU632_RS02865 leuD -3.8 -5.5 3-isopropylmalate dehydratase small subunit compare
LU632_RS15250 purK -3.7 -2.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
LU632_RS07985 nuoF -3.7 -9.9 NADH-quinone oxidoreductase subunit NuoF compare
LU632_RS17615 -3.7 -2.8 YejL family protein compare
LU632_RS07975 nuoC -3.7 -14.8 NADH-quinone oxidoreductase subunit C/D compare
LU632_RS04250 yiaK -3.7 -4.5 3-dehydro-L-gulonate 2-dehydrogenase compare
LU632_RS21880 secB -3.6 -3.5 protein-export chaperone SecB compare
LU632_RS16490 arnC -3.6 -10.7 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
LU632_RS08800 -3.6 -1.5 glycosyltransferase compare
LU632_RS02870 leuC -3.6 -11.7 3-isopropylmalate dehydratase large subunit compare
LU632_RS22135 glnG -3.5 -7.6 nitrogen regulation protein NR(I) compare
LU632_RS00695 -3.5 -0.7 fimbria/pilus periplasmic chaperone compare
LU632_RS10665 -3.5 -2.0 hypothetical protein compare
LU632_RS21085 secG -3.5 -2.4 preprotein translocase subunit SecG compare
LU632_RS08020 nuoM -3.5 -8.7 NADH-quinone oxidoreductase subunit M compare
LU632_RS19620 argE -3.5 -6.4 acetylornithine deacetylase compare
LU632_RS08885 -3.5 -5.4 ABC transporter ATP-binding protein compare
LU632_RS08335 -3.4 -1.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LU632_RS02875 leuB -3.4 -9.7 3-isopropylmalate dehydrogenase compare
LU632_RS02910 rsmH -3.4 -9.3 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
LU632_RS21225 mlaB -3.4 -3.6 lipid asymmetry maintenance protein MlaB compare
LU632_RS07775 aroC -3.4 -3.5 chorismate synthase compare
LU632_RS21955 -3.3 -1.1 glycosyltransferase family 4 protein compare
LU632_RS23985 tatB -3.3 -4.7 Sec-independent protein translocase protein TatB compare
LU632_RS22810 -3.3 -9.7 aspartate aminotransferase family protein compare
LU632_RS09795 aroA -3.3 -7.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
LU632_RS08010 nuoK -3.2 -4.3 NADH-quinone oxidoreductase subunit NuoK compare
LU632_RS21230 mlaC -3.2 -6.1 phospholipid-binding protein MlaC compare
LU632_RS24880 pstS -3.2 -4.4 phosphate ABC transporter substrate-binding protein PstS compare
LU632_RS21055 rbfA -3.2 -0.9 30S ribosome-binding factor RbfA compare
LU632_RS08015 nuoL -3.2 -12.9 NADH-quinone oxidoreductase subunit L compare
LU632_RS08000 nuoI -3.2 -6.0 NADH-quinone oxidoreductase subunit NuoI compare
LU632_RS07970 -3.1 -11.5 NADH-quinone oxidoreductase subunit B compare
LU632_RS06610 crr -3.1 -2.0 PTS glucose transporter subunit IIA compare
LU632_RS21245 mlaF -3.1 -7.4 phospholipid ABC transporter ATP-binding protein MlaF compare
LU632_RS07990 nuoG -3.1 -10.7 NADH-quinone oxidoreductase subunit NuoG compare
LU632_RS21365 mdh -3.1 -6.8 malate dehydrogenase compare
LU632_RS19930 rseP -3.1 -3.3 sigma E protease regulator RseP compare
LU632_RS21875 gpsA -3.1 -10.7 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
LU632_RS19610 argB -3.1 -4.6 acetylglutamate kinase compare
LU632_RS22140 glnL -3.0 -8.0 nitrogen regulation protein NR(II) compare
LU632_RS21240 mlaE -3.0 -3.3 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
LU632_RS22270 -3.0 -1.6 hypothetical protein compare
LU632_RS19585 sthA -3.0 -10.5 Si-specific NAD(P)(+) transhydrogenase compare
LU632_RS07965 -2.9 -4.2 NADH-quinone oxidoreductase subunit A compare
LU632_RS08925 hisA -2.9 -2.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LU632_RS10250 -2.9 -1.2 phospholipase D family protein compare
LU632_RS08025 nuoN -2.9 -6.6 NADH-quinone oxidoreductase subunit NuoN compare
LU632_RS16095 sucA -2.9 -2.0 2-oxoglutarate dehydrogenase E1 component compare
LU632_RS19270 ftsX -2.9 -13.2 permease-like cell division protein FtsX compare
LU632_RS06470 -2.9 -2.3 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
LU632_RS04710 -2.9 -0.8 IS110 family transposase compare
LU632_RS22935 envZ -2.8 -8.0 two-component system sensor histidine kinase EnvZ compare
LU632_RS12910 -2.8 -1.7 NAD-dependent epimerase compare
LU632_RS03305 -2.8 -8.2 sucrose-specific PTS transporter subunit IIBC compare
LU632_RS24155 -2.8 -1.5 class I adenylate cyclase compare
LU632_RS08930 hisH -2.8 -7.8 imidazole glycerol phosphate synthase subunit HisH compare
LU632_RS02880 leuA -2.8 -11.1 2-isopropylmalate synthase compare
LU632_RS04485 -2.8 -1.8 SDR family oxidoreductase compare
LU632_RS06410 -2.7 -1.0 phosphoadenylyl-sulfate reductase compare
LU632_RS07300 mlaA -2.7 -8.5 phospholipid-binding lipoprotein MlaA compare
LU632_RS25495 -2.7 -1.2 type II toxin-antitoxin system MqsA family antitoxin compare
LU632_RS04270 ulaD -2.7 -5.7 3-keto-L-gulonate-6-phosphate decarboxylase UlaD compare
LU632_RS16475 arnT -2.7 -10.7 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
LU632_RS08005 nuoJ -2.6 -5.6 NADH-quinone oxidoreductase subunit J compare
LU632_RS25020 -2.6 -0.7 hypothetical protein compare
LU632_RS17820 ndk -2.6 -2.1 nucleoside-diphosphate kinase compare
LU632_RS02070 hflC -2.6 -2.7 protease modulator HflC compare
LU632_RS16480 -2.6 -3.0 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
LU632_RS18295 -2.5 -0.8 ISNCY family transposase compare
LU632_RS03300 -2.5 -11.4 carbohydrate porin compare
LU632_RS04740 -2.5 -0.7 DNA topoisomerase IV subunit B compare
LU632_RS02615 thrB -2.5 -4.1 homoserine kinase compare
LU632_RS04600 -2.5 -1.0 hypothetical protein compare
LU632_RS24105 -2.5 -0.7 thioesterase family protein compare
LU632_RS24405 -2.5 -11.4 branched-chain amino acid transaminase compare
LU632_RS25155 -2.5 -1.1 phage tail assembly protein compare
LU632_RS05510 speA -2.4 -1.1 biosynthetic arginine decarboxylase compare
LU632_RS09635 -2.4 -1.7 YbjN domain-containing protein compare
LU632_RS09745 -2.4 -0.9 DNA translocase FtsK 4TM domain-containing protein compare
LU632_RS04275 -2.4 -6.8 L-ribulose-5-phosphate 3-epimerase compare
LU632_RS02050 miaA -2.4 -3.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LU632_RS18875 -2.4 -0.8 IS256 family transposase compare
LU632_RS07995 nuoH -2.4 -4.5 NADH-quinone oxidoreductase subunit NuoH compare
LU632_RS09245 -2.4 -5.8 L,D-transpeptidase family protein compare
LU632_RS12905 hns -2.3 -1.4 DNA-binding transcriptional regulator H-NS compare
LU632_RS08915 hisIE -2.3 -4.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
LU632_RS20760 -2.3 -1.3 hypothetical protein compare
LU632_RS07570 -2.3 -1.2 hypothetical protein compare
LU632_RS04300 -2.3 -1.8 IS3 family transposase compare
LU632_RS16120 -2.3 -11.3 citrate synthase compare
LU632_RS16130 -2.3 -0.7 helix-turn-helix domain-containing protein compare
LU632_RS02085 cysQ -2.2 -1.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
LU632_RS12925 rssB -2.2 -1.0 two-component system response regulator RssB compare
LU632_RS25375 -2.2 -1.0 hypothetical protein compare
LU632_RS20900 argF -2.2 -9.1 ornithine carbamoyltransferase compare
LU632_RS01610 -2.2 -1.0 tail protein X compare
LU632_RS19605 -2.2 -6.0 argininosuccinate synthase compare
LU632_RS24890 pstA -2.2 -1.2 phosphate ABC transporter permease PstA compare
LU632_RS24840 kup -2.2 -8.0 low affinity potassium transporter Kup compare
LU632_RS19960 -2.2 -1.3 hypothetical protein compare
LU632_RS04280 araD -2.1 -8.5 L-ribulose-5-phosphate 4-epimerase compare
LU632_RS20695 bacA -2.1 -3.9 undecaprenyl-diphosphate phosphatase compare
LU632_RS22020 rph -2.1 -4.6 ribonuclease PH compare
LU632_RS08945 hisD -2.1 -5.6 histidinol dehydrogenase compare
LU632_RS01020 purH -2.1 -1.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LU632_RS19600 argH -2.1 -7.8 argininosuccinate lyase compare
LU632_RS07090 -2.1 -1.0 Rz1 family lipoprotein compare
LU632_RS21930 -2.1 -7.7 glycosyltransferase compare
LU632_RS08920 hisF -2.1 -5.3 imidazole glycerol phosphate synthase subunit HisF compare
LU632_RS15905 galT -2.0 -4.3 galactose-1-phosphate uridylyltransferase compare
LU632_RS16855 -2.0 -1.3 helix-turn-helix domain-containing protein compare
LU632_RS26175 -2.0 -1.8 hypothetical protein compare
LU632_RS06905 -2.0 -0.9 excisionase compare
LU632_RS17325 fruB -2.0 -6.6 fused PTS fructose transporter subunit IIA/HPr protein compare
LU632_RS07980 nuoE -2.0 -1.3 NADH-quinone oxidoreductase subunit NuoE compare
LU632_RS06040 lysA -2.0 -5.8 diaminopimelate decarboxylase compare
LU632_RS23660 -1.9 -2.3 peptide transporter compare
LU632_RS19980 glnD -1.9 -2.0 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
LU632_RS12730 rluB -1.9 -5.8 23S rRNA pseudouridine(2605) synthase RluB compare
LU632_RS16250 nagA -1.9 -4.7 N-acetylglucosamine-6-phosphate deacetylase compare
LU632_RS24385 ilvC -1.9 -4.4 ketol-acid reductoisomerase compare
LU632_RS02065 hflK -1.9 -2.0 FtsH protease activity modulator HflK compare
LU632_RS13500 -1.9 -1.9 flagellar protein FlhE compare
LU632_RS17785 bamB -1.9 -4.0 outer membrane protein assembly factor BamB compare
LU632_RS05320 -1.9 -0.8 hypothetical protein compare
LU632_RS19865 rof -1.9 -2.4 Rho-binding antiterminator compare
LU632_RS22865 aroB -1.8 -2.0 3-dehydroquinate synthase compare
LU632_RS24400 ilvD -1.8 -8.6 dihydroxy-acid dehydratase compare
LU632_RS11675 rhaD -1.8 -3.7 rhamnulose-1-phosphate aldolase compare
LU632_RS26120 -1.8 -1.9 WGR domain-containing protein compare
LU632_RS02610 thrA -1.8 -7.0 bifunctional aspartate kinase/homoserine dehydrogenase I compare
LU632_RS14915 -1.8 -1.3 DDE-type integrase/transposase/recombinase compare
LU632_RS26110 -1.8 -5.5 ParA family protein compare
LU632_RS24240 wecB -1.8 -4.2 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
LU632_RS18500 tgt -1.8 -3.0 tRNA guanosine(34) transglycosylase Tgt compare
LU632_RS04265 -1.8 -8.1 carbohydrate kinase compare
LU632_RS26015 -1.8 -3.9 hypothetical protein compare
LU632_RS10275 mdoH -1.8 -4.1 glucans biosynthesis glucosyltransferase MdoH compare
LU632_RS06335 -1.8 -6.4 glycerate kinase compare
LU632_RS21940 -1.8 -2.5 glycosyltransferase compare
LU632_RS13375 -1.8 -0.8 transcriptional regulator compare
LU632_RS14735 -1.8 -3.8 glycine zipper 2TM domain-containing protein compare
LU632_RS23875 dsbA -1.7 -0.6 thiol:disulfide interchange protein DsbA compare
LU632_RS08850 rfbB -1.7 -2.1 dTDP-glucose 4,6-dehydratase compare
LU632_RS17315 fruA -1.7 -8.6 PTS fructose transporter subunit IIBC compare
LU632_RS08940 hisC -1.7 -7.8 histidinol-phosphate transaminase compare
LU632_RS15445 tyrA -1.7 -7.9 bifunctional chorismate mutase/prephenate dehydrogenase compare
LU632_RS06210 argA -1.7 -6.0 amino-acid N-acetyltransferase compare
LU632_RS02635 mog -1.7 -2.7 molybdopterin adenylyltransferase compare
LU632_RS10270 -1.7 -1.5 glucan biosynthesis protein G compare
LU632_RS12560 -1.7 -0.9 DUF2498 family protein compare
LU632_RS00895 tuf -1.7 -4.7 elongation factor Tu compare
LU632_RS19665 ftsN -1.6 -2.1 cell division protein FtsN compare


Specific Phenotypes

None in this experiment

For Erwinia tracheiphila SCR3 in in planta experiments