Experiment set3S334 for Phocaeicola dorei CL03T12C01
Glycogen; filtered 2.5 mg/ml carbon source
Group: carbon sourceMedia: Varel_Bryant_medium + Glycogen; filtered (2.5 mg/ml)
Culturing: Bdorei_CL03T12C01_ML9, 96 deep-well microplate; 1.2 mL volume, Anaerobic, at 37 (C), shaken=0 rpm
By: Surya Tripathi on 3/20/24
Media components: 15 uM Hemin, 134 uM L-Methionine, 15 uM Iron (II) sulfate heptahydrate, 8.25 mM L-Cysteine, 23.8 mM Sodium bicarbonate, Mineral 3B solution (6.6 mM Potassium phosphate monobasic, 15.4 mM Sodium Chloride, 98 uM Magnesium chloride hexahydrate, 176.5 uM Calcium chloride dihydrate, 4.2 uM Cobalt chloride hexahydrate, 50.5 uM Manganese (II) chloride tetrahydrate, 9.3 mM Ammonium chloride, 1.75 mM Sodium sulfate)
Specific Phenotypes
For 8 genes in this experiment
For carbon source Glycogen; filtered in Phocaeicola dorei CL03T12C01
For carbon source Glycogen; filtered across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Adenosyl nucleosidases | 1 |
| Deoxyribose and Deoxynucleoside Catabolism | 1 |
| Murein hydrolase regulation and cell death | 1 |
| Purine conversions | 1 |
| Thiamin biosynthesis | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Pyrimidine metabolism
- Purine metabolism
- Drug metabolism - other enzymes
- Nicotinate and nicotinamide metabolism
- Biosynthesis of alkaloids derived from histidine and purine
MetaCyc Pathways
Pathways that contain genes with specific phenotypes: