Experiment set3S333 for Phocaeicola dorei CL03T12C01

Compare to:

Glycogen; filtered 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS21060 -7.1 -10.8 anthranilate phosphoribosyltransferase compare
ABI39_RS02970 -6.9 -10.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS04695 -6.8 -8.4 shikimate kinase compare
ABI39_RS21065 -6.8 -7.7 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS04455 -6.4 -22.4 TonB-dependent receptor compare
ABI39_RS19815 -6.4 -2.3 hypothetical protein compare
ABI39_RS04460 -6.3 -14.7 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS04425 -6.2 -16.4 hypothetical protein compare
ABI39_RS21075 -6.2 -6.9 tryptophan synthase subunit alpha compare
ABI39_RS11840 -6.2 -4.3 histidinol-phosphate transaminase compare
ABI39_RS02980 -6.1 -8.8 N-acetyltransferase compare
ABI39_RS10505 -6.1 -13.0 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS02975 -6.0 -11.9 argininosuccinate synthase compare
ABI39_RS19935 -6.0 -10.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS19925 -6.0 -8.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS07095 -5.9 -21.8 argininosuccinate lyase compare
ABI39_RS10495 -5.9 -7.6 prephenate dehydrogenase compare
ABI39_RS12665 -5.8 -8.8 shikimate dehydrogenase compare
ABI39_RS11845 -5.5 -7.5 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS02870 -5.4 -7.6 acetylornithine carbamoyltransferase compare
ABI39_RS06670 -5.4 -16.6 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS10500 -5.4 -5.2 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS12645 -5.4 -19.4 chorismate synthase compare
ABI39_RS21045 -5.3 -7.3 tryptophan synthase subunit beta compare
ABI39_RS10510 -5.3 -13.7 prephenate dehydratase compare
ABI39_RS05660 -5.3 -10.5 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS11830 -5.3 -5.1 ATP phosphoribosyltransferase compare
ABI39_RS04685 -5.3 -5.3 acetylglutamate kinase compare
ABI39_RS02875 -5.3 -13.9 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS12770 -5.2 -3.6 hypothetical protein compare
ABI39_RS16905 -5.2 -15.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS21050 -5.2 -7.4 anthranilate synthase component I family protein compare
ABI39_RS06675 -5.1 -9.0 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS11835 -5.0 -7.6 histidinol dehydrogenase compare
ABI39_RS09685 -5.0 -3.4 hypothetical protein compare
ABI39_RS16910 -4.9 -9.4 3-phosphoglycerate dehydrogenase compare
ABI39_RS07005 -4.9 -6.1 type II 3-dehydroquinate dehydratase compare
ABI39_RS02880 -4.7 -12.3 glutamate 5-kinase compare
ABI39_RS02960 -4.7 -10.2 pyrroline-5-carboxylate reductase compare
ABI39_RS19385 -4.6 -4.0 hypothetical protein compare
ABI39_RS07790 -4.6 -13.7 M20 family metallo-hydrolase compare
ABI39_RS10430 -4.6 -16.5 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS04795 -4.4 -2.6 M28 family peptidase compare
ABI39_RS02965 -4.4 -17.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS07915 -4.3 -10.1 purine-nucleoside phosphorylase compare
ABI39_RS06380 -4.3 -9.7 GH3 auxin-responsive promoter family protein compare
ABI39_RS09230 -4.3 -3.2 hypothetical protein compare
ABI39_RS01650 -4.2 -12.3 methylmalonyl-CoA mutase small subunit compare
ABI39_RS00770 -4.2 -14.1 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS19950 -4.2 -5.7 diaminopimelate decarboxylase compare
ABI39_RS07090 -4.2 -4.1 hypothetical protein compare
ABI39_RS10435 -4.1 -12.1 cofactor-independent phosphoglycerate mutase compare
ABI39_RS10640 -4.1 -12.9 serine dehydratase subunit alpha family protein compare
ABI39_RS19930 -4.1 -5.8 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS04700 -4.1 -2.8 type I DNA topoisomerase compare
ABI39_RS09845 -4.0 -3.9 (d)CMP kinase compare
ABI39_RS01655 -4.0 -13.5 methylmalonyl-CoA mutase compare
ABI39_RS04280 -3.9 -6.5 DUF4292 domain-containing protein compare
ABI39_RS10440 -3.9 -12.2 threonine synthase compare
ABI39_RS10215 -3.8 -14.6 3-isopropylmalate dehydrogenase compare
ABI39_RS18745 -3.8 -5.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS05450 -3.7 -4.8 redox-regulated ATPase YchF compare
ABI39_RS00205 -3.7 -4.3 phosphoglucosamine mutase compare
ABI39_RS17950 -3.5 -3.4 Crp/Fnr family transcriptional regulator compare
ABI39_RS04465 -3.4 -17.2 SusF/SusE family outer membrane protein compare
ABI39_RS12735 -3.4 -11.3 ketol-acid reductoisomerase compare
ABI39_RS14560 -3.3 -4.0 aspartate 1-decarboxylase compare
ABI39_RS09575 -3.3 -3.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS17850 -3.2 -5.4 alpha-glucan family phosphorylase compare
ABI39_RS01360 -3.2 -9.3 hypothetical protein compare
ABI39_RS01415 -3.2 -4.3 branched-chain amino acid aminotransferase compare
ABI39_RS12715 -3.2 -11.7 dihydroxy-acid dehydratase compare
ABI39_RS00410 -3.2 -4.3 response regulator compare
ABI39_RS12720 -3.2 -14.3 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS10205 -3.1 -9.3 3-isopropylmalate dehydratase small subunit compare
ABI39_RS02225 -3.0 -24.0 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit compare
ABI39_RS02470 -3.0 -6.1 ATP-dependent DNA helicase RecG compare
ABI39_RS02755 -2.9 -2.0 glycosyltransferase compare
ABI39_RS01300 -2.9 -12.9 NADP-specific glutamate dehydrogenase compare
ABI39_RS11505 -2.9 -1.7 YccF domain-containing protein compare
ABI39_RS21350 -2.9 -3.4 aspartate--ammonia ligase compare
ABI39_RS08305 -2.9 -8.7 DUF4831 family protein compare
ABI39_RS10650 -2.9 -16.4 AraC family transcriptional regulator compare
ABI39_RS08195 -2.9 -8.5 hypothetical protein compare
ABI39_RS15410 -2.8 -5.2 DUF4296 domain-containing protein compare
ABI39_RS21365 -2.8 -6.8 HDIG domain-containing protein compare
ABI39_RS18330 -2.8 -10.8 PD40 domain-containing protein compare
ABI39_RS10200 -2.7 -13.1 3-isopropylmalate dehydratase large subunit compare
ABI39_RS07815 -2.7 -5.6 RNA polymerase sigma factor compare
ABI39_RS17420 -2.7 -10.0 serine hydroxymethyltransferase compare
ABI39_RS05175 -2.6 -8.0 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS17640 -2.6 -6.6 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS17140 -2.5 -3.3 AAA family ATPase compare
ABI39_RS17170 -2.5 -2.4 protein BatD compare
ABI39_RS04145 -2.5 -2.4 transcription elongation factor GreA compare
ABI39_RS07000 -2.5 -3.7 site-specific tyrosine recombinase XerD compare
ABI39_RS08555 -2.4 -7.6 Trk system potassium transporter TrkA compare
ABI39_RS14715 -2.4 -7.8 RidA family protein compare
ABI39_RS15415 -2.4 -6.4 hypothetical protein compare
ABI39_RS20965 -2.4 -2.2 SPOR domain-containing protein compare
ABI39_RS10110 -2.4 -12.5 S9 family peptidase compare
ABI39_RS18345 -2.3 -9.9 nucleoside phosphorylase compare
ABI39_RS04475 -2.3 -14.1 alpha-amylase compare
ABI39_RS17160 -2.3 -2.2 VWA domain-containing protein compare
ABI39_RS06995 -2.3 -10.0 tetratricopeptide repeat protein compare
ABI39_RS19985 -2.3 -2.4 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS11545 -2.3 -8.4 hypothetical protein compare
ABI39_RS11350 -2.2 -6.6 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS09850 -2.2 -4.4 energy transducer TonB compare
ABI39_RS02500 -2.2 -11.4 pyridoxine 5'-phosphate synthase compare
ABI39_RS16700 -2.2 -8.3 agmatine deiminase family protein compare
ABI39_RS13835 -2.1 -3.5 DUF3037 domain-containing protein compare
ABI39_RS17175 -2.1 -5.5 tetratricopeptide repeat protein compare
ABI39_RS02290 -2.1 -3.3 hypothetical protein compare
ABI39_RS11405 -2.1 -10.4 hypothetical protein compare
ABI39_RS00240 -2.0 -5.6 NigD-like N-terminal domain-containing protein compare
ABI39_RS09245 -2.0 -10.8 cardiolipin synthase compare
ABI39_RS07820 -2.0 -7.1 VanZ family protein compare
ABI39_RS20085 -2.0 -5.8 electron transport complex subunit E compare
ABI39_RS06250 -2.0 -11.1 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS20100 -1.9 -7.8 electron transport complex subunit RsxC compare
ABI39_RS04470 -1.9 -7.2 DUF5115 domain-containing protein compare
ABI39_RS19020 -1.9 -15.2 response regulator compare
ABI39_RS14835 -1.9 -2.2 DNA-binding protein compare
ABI39_RS11655 -1.9 -1.3 MFS transporter compare
ABI39_RS18740 -1.9 -6.0 ATP-binding protein compare
ABI39_RS09285 -1.9 -2.0 hypothetical protein compare
ABI39_RS08850 -1.8 -3.4 toprim domain-containing protein compare
ABI39_RS06010 -1.8 -9.1 polysaccharide deacetylase family protein compare
ABI39_RS15265 -1.8 -3.1 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS02335 -1.8 -8.2 trigger factor compare
ABI39_RS18660 -1.8 -1.8 Hsp20/alpha crystallin family protein compare
ABI39_RS10195 -1.8 -9.9 2-isopropylmalate synthase compare
ABI39_RS20080 -1.8 -5.0 electron transport complex subunit RsxA compare
ABI39_RS04860 -1.7 -1.6 HigA family addiction module antidote protein compare
ABI39_RS18300 -1.7 -7.5 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
ABI39_RS10210 -1.7 -4.7 2-isopropylmalate synthase compare
ABI39_RS14240 -1.7 -4.2 biotin synthase BioB compare
ABI39_RS20105 -1.7 -6.1 Fe-S cluster domain-containing protein compare
ABI39_RS07010 -1.7 -1.9 pyruvate kinase compare
ABI39_RS17245 -1.7 -4.8 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
ABI39_RS17195 -1.7 -8.1 hypothetical protein compare
ABI39_RS20095 -1.7 -7.8 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS15735 -1.6 -1.8 hypothetical protein compare
ABI39_RS13170 -1.6 -9.0 Crp/Fnr family transcriptional regulator compare
ABI39_RS00755 -1.6 -8.8 hypothetical protein compare
ABI39_RS09515 -1.6 -4.1 nucleoside deaminase compare
ABI39_RS12425 -1.6 -7.9 acyl-CoA carboxylase subunit beta compare
ABI39_RS14150 -1.6 -8.7 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABI39_RS12955 -1.6 -6.8 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS21055 -1.5 -4.5 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS15610 -1.5 -1.5 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS14245 -1.5 -11.6 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS22820 -1.5 -1.1 hypothetical protein compare
ABI39_RS19945 -1.5 -5.6 aspartate kinase compare
ABI39_RS16695 -1.5 -10.0 carbon-nitrogen hydrolase compare
ABI39_RS22135 -1.5 -2.5 type II toxin-antitoxin system RelE/ParE family toxin compare
ABI39_RS09650 -1.5 -9.0 AraC family transcriptional regulator compare
ABI39_RS14265 -1.5 -8.2 ATP-dependent dethiobiotin synthetase BioD compare
ABI39_RS05765 -1.5 -1.8 DUF4294 domain-containing protein compare
ABI39_RS01735 -1.5 -6.6 acyl-CoA dehydrogenase family protein compare
ABI39_RS17150 -1.4 -3.0 hypothetical protein compare
ABI39_RS05280 -1.4 -9.3 S41 family peptidase compare
ABI39_RS01725 -1.4 -4.4 electron transfer flavoprotein subunit beta/FixA family protein compare
ABI39_RS04430 -1.4 -2.8 glycoside hydrolase family 13 protein compare
ABI39_RS00515 -1.4 -2.5 hypothetical protein compare
ABI39_RS20090 -1.4 -5.5 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS11140 -1.4 -1.3 undecaprenyl-phosphate glucose phosphotransferase compare
ABI39_RS16235 -1.4 -2.0 hypothetical protein compare
ABI39_RS12415 -1.4 -2.6 biotin/lipoyl-binding protein compare
ABI39_RS03320 -1.4 -7.5 FecR domain-containing protein compare
ABI39_RS14250 -1.4 -8.0 8-amino-7-oxononanoate synthase compare
ABI39_RS03830 -1.4 -1.8 ribosome-associated translation inhibitor RaiA compare
ABI39_RS13845 -1.4 -1.1 histone H1 compare
ABI39_RS02845 -1.4 -5.6 RluA family pseudouridine synthase compare
ABI39_RS09510 -1.3 -2.6 hypothetical protein compare
ABI39_RS01730 -1.3 -5.7 electron transfer flavoprotein subunit alpha/FixB family protein compare
ABI39_RS04970 -1.3 -4.1 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS15855 -1.3 -2.7 helix-turn-helix transcriptional regulator compare
ABI39_RS17205 -1.3 -3.3 ATP-dependent Clp protease ATP-binding subunit compare
ABI39_RS05405 -1.3 -7.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABI39_RS00405 -1.3 -9.5 phosphoribosylformylglycinamidine synthase compare
ABI39_RS12150 -1.3 -3.3 hotdog fold thioesterase compare
ABI39_RS15000 -1.3 -2.4 F0F1 ATP synthase subunit delta compare
ABI39_RS19920 -1.3 -1.8 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS15615 -1.3 -2.4 cysteine-rich CWC family protein compare
ABI39_RS05650 -1.2 -6.2 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
ABI39_RS07910 -1.2 -7.7 thiamine-phosphate kinase compare
ABI39_RS17320 -1.2 -3.2 YhcH/YjgK/YiaL family protein compare
ABI39_RS09935 -1.2 -5.6 DNA topoisomerase 3 compare
ABI39_RS20395 -1.2 -2.0 DedA family protein compare
ABI39_RS16620 -1.2 -1.2 phage integrase SAM-like domain-containing protein compare
ABI39_RS05655 -1.2 -3.1 hypothetical protein compare
ABI39_RS00095 -1.2 -6.6 elongation factor G compare
ABI39_RS14145 -1.2 -2.2 diacylglycerol kinase family protein compare
ABI39_RS04930 -1.2 -3.2 helix-turn-helix transcriptional regulator compare
ABI39_RS13265 -1.2 -4.1 hypothetical protein compare
ABI39_RS00090 -1.2 -3.9 HAMP domain-containing histidine kinase compare
ABI39_RS04950 -1.2 -2.3 DEAD/DEAH box helicase compare
ABI39_RS19585 -1.2 -3.8 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Glycogen; filtered in Phocaeicola dorei CL03T12C01

For carbon source Glycogen; filtered across organisms