Experiment set3S331 for Phocaeicola dorei CL03T12C01

Compare to:

Glycogen; autoclaved 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS21065 -8.4 -5.8 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS21075 -8.1 -5.6 tryptophan synthase subunit alpha compare
ABI39_RS04455 -7.5 -18.2 TonB-dependent receptor compare
ABI39_RS04460 -7.3 -15.7 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS02980 -7.3 -10.0 N-acetyltransferase compare
ABI39_RS04425 -7.2 -16.1 hypothetical protein compare
ABI39_RS21060 -7.2 -8.5 anthranilate phosphoribosyltransferase compare
ABI39_RS07005 -7.0 -8.5 type II 3-dehydroquinate dehydratase compare
ABI39_RS02975 -6.7 -12.8 argininosuccinate synthase compare
ABI39_RS02880 -6.6 -13.3 glutamate 5-kinase compare
ABI39_RS21045 -6.5 -4.5 tryptophan synthase subunit beta compare
ABI39_RS07095 -6.5 -23.7 argininosuccinate lyase compare
ABI39_RS19935 -6.4 -9.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS19930 -6.3 -6.3 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS12665 -6.1 -7.3 shikimate dehydrogenase compare
ABI39_RS10510 -6.0 -12.8 prephenate dehydratase compare
ABI39_RS07790 -6.0 -7.3 M20 family metallo-hydrolase compare
ABI39_RS11845 -6.0 -5.8 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS05660 -6.0 -11.4 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS16910 -5.9 -11.9 3-phosphoglycerate dehydrogenase compare
ABI39_RS21050 -5.8 -9.3 anthranilate synthase component I family protein compare
ABI39_RS12645 -5.8 -15.9 chorismate synthase compare
ABI39_RS16905 -5.7 -14.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS11835 -5.7 -5.6 histidinol dehydrogenase compare
ABI39_RS10495 -5.7 -9.2 prephenate dehydrogenase compare
ABI39_RS10505 -5.7 -11.7 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS02870 -5.6 -8.2 acetylornithine carbamoyltransferase compare
ABI39_RS04695 -5.6 -8.4 shikimate kinase compare
ABI39_RS04685 -5.6 -7.9 acetylglutamate kinase compare
ABI39_RS10440 -5.6 -11.7 threonine synthase compare
ABI39_RS02875 -5.5 -13.6 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS06670 -5.5 -13.4 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS19385 -5.3 -3.7 hypothetical protein compare
ABI39_RS02960 -5.2 -16.9 pyrroline-5-carboxylate reductase compare
ABI39_RS06380 -5.1 -10.9 GH3 auxin-responsive promoter family protein compare
ABI39_RS12770 -5.1 -3.5 hypothetical protein compare
ABI39_RS10430 -5.1 -15.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS02970 -5.0 -11.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS10500 -5.0 -5.9 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS19925 -5.0 -8.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS09685 -4.9 -3.4 hypothetical protein compare
ABI39_RS11840 -4.8 -6.6 histidinol-phosphate transaminase compare
ABI39_RS02965 -4.8 -15.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS06675 -4.6 -9.5 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS09845 -4.5 -3.1 (d)CMP kinase compare
ABI39_RS10435 -4.5 -11.4 cofactor-independent phosphoglycerate mutase compare
ABI39_RS01655 -4.5 -10.9 methylmalonyl-CoA mutase compare
ABI39_RS08195 -4.5 -8.5 hypothetical protein compare
ABI39_RS00770 -4.4 -15.0 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS04795 -4.4 -2.7 M28 family peptidase compare
ABI39_RS19950 -4.4 -5.2 diaminopimelate decarboxylase compare
ABI39_RS04465 -4.2 -16.8 SusF/SusE family outer membrane protein compare
ABI39_RS09230 -4.2 -3.2 hypothetical protein compare
ABI39_RS00205 -4.2 -4.0 phosphoglucosamine mutase compare
ABI39_RS07090 -4.1 -4.7 hypothetical protein compare
ABI39_RS12715 -4.1 -12.3 dihydroxy-acid dehydratase compare
ABI39_RS11830 -4.1 -5.8 ATP phosphoribosyltransferase compare
ABI39_RS17950 -4.1 -2.8 Crp/Fnr family transcriptional regulator compare
ABI39_RS01360 -4.0 -9.7 hypothetical protein compare
ABI39_RS04700 -4.0 -3.9 type I DNA topoisomerase compare
ABI39_RS01650 -3.9 -12.4 methylmalonyl-CoA mutase small subunit compare
ABI39_RS18745 -3.9 -3.8 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS15410 -3.9 -5.8 DUF4296 domain-containing protein compare
ABI39_RS05175 -3.8 -5.2 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS01415 -3.8 -4.4 branched-chain amino acid aminotransferase compare
ABI39_RS12735 -3.7 -8.6 ketol-acid reductoisomerase compare
ABI39_RS10205 -3.6 -9.7 3-isopropylmalate dehydratase small subunit compare
ABI39_RS11140 -3.6 -1.8 undecaprenyl-phosphate glucose phosphotransferase compare
ABI39_RS10215 -3.6 -14.5 3-isopropylmalate dehydrogenase compare
ABI39_RS09575 -3.6 -2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS18330 -3.6 -10.2 PD40 domain-containing protein compare
ABI39_RS08555 -3.5 -8.4 Trk system potassium transporter TrkA compare
ABI39_RS00410 -3.4 -4.0 response regulator compare
ABI39_RS10640 -3.4 -12.4 serine dehydratase subunit alpha family protein compare
ABI39_RS10110 -3.4 -13.5 S9 family peptidase compare
ABI39_RS10200 -3.4 -16.4 3-isopropylmalate dehydratase large subunit compare
ABI39_RS06995 -3.3 -10.9 tetratricopeptide repeat protein compare
ABI39_RS07915 -3.3 -9.4 purine-nucleoside phosphorylase compare
ABI39_RS14560 -3.3 -4.4 aspartate 1-decarboxylase compare
ABI39_RS12720 -3.2 -14.4 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS15265 -3.2 -2.2 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS02470 -3.2 -6.4 ATP-dependent DNA helicase RecG compare
ABI39_RS06010 -3.2 -9.8 polysaccharide deacetylase family protein compare
ABI39_RS17850 -3.1 -5.1 alpha-glucan family phosphorylase compare
ABI39_RS14715 -3.1 -5.4 RidA family protein compare
ABI39_RS07815 -3.1 -6.3 RNA polymerase sigma factor compare
ABI39_RS08305 -3.0 -8.5 DUF4831 family protein compare
ABI39_RS00090 -3.0 -6.2 HAMP domain-containing histidine kinase compare
ABI39_RS17140 -2.9 -2.8 AAA family ATPase compare
ABI39_RS02755 -2.9 -2.0 glycosyltransferase compare
ABI39_RS02225 -2.9 -22.2 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit compare
ABI39_RS20085 -2.9 -6.8 electron transport complex subunit E compare
ABI39_RS04145 -2.9 -2.6 transcription elongation factor GreA compare
ABI39_RS17640 -2.9 -6.2 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS11545 -2.8 -9.0 hypothetical protein compare
ABI39_RS21350 -2.8 -3.7 aspartate--ammonia ligase compare
ABI39_RS01300 -2.8 -13.6 NADP-specific glutamate dehydrogenase compare
ABI39_RS17420 -2.7 -10.1 serine hydroxymethyltransferase compare
ABI39_RS11405 -2.7 -11.9 hypothetical protein compare
ABI39_RS09515 -2.7 -5.7 nucleoside deaminase compare
ABI39_RS16700 -2.7 -8.3 agmatine deiminase family protein compare
ABI39_RS04280 -2.7 -6.1 DUF4292 domain-containing protein compare
ABI39_RS17170 -2.7 -1.8 protein BatD compare
ABI39_RS09245 -2.7 -12.6 cardiolipin synthase compare
ABI39_RS04475 -2.7 -15.9 alpha-amylase compare
ABI39_RS13835 -2.6 -3.1 DUF3037 domain-containing protein compare
ABI39_RS10650 -2.6 -16.2 AraC family transcriptional regulator compare
ABI39_RS02290 -2.6 -4.4 hypothetical protein compare
ABI39_RS10195 -2.5 -10.8 2-isopropylmalate synthase compare
ABI39_RS15415 -2.5 -7.2 hypothetical protein compare
ABI39_RS05450 -2.4 -5.9 redox-regulated ATPase YchF compare
ABI39_RS00240 -2.4 -5.6 NigD-like N-terminal domain-containing protein compare
ABI39_RS17150 -2.3 -4.3 hypothetical protein compare
ABI39_RS17175 -2.3 -5.2 tetratricopeptide repeat protein compare
ABI39_RS17245 -2.3 -5.0 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
ABI39_RS19020 -2.3 -18.7 response regulator compare
ABI39_RS17745 -2.2 -2.6 sulfur carrier protein ThiS compare
ABI39_RS17205 -2.2 -3.9 ATP-dependent Clp protease ATP-binding subunit compare
ABI39_RS04470 -2.2 -7.5 DUF5115 domain-containing protein compare
ABI39_RS05765 -2.2 -2.7 DUF4294 domain-containing protein compare
ABI39_RS09850 -2.1 -4.9 energy transducer TonB compare
ABI39_RS04970 -2.1 -5.4 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS04860 -2.1 -1.9 HigA family addiction module antidote protein compare
ABI39_RS21365 -2.1 -6.5 HDIG domain-containing protein compare
ABI39_RS14250 -2.0 -7.6 8-amino-7-oxononanoate synthase compare
ABI39_RS02335 -2.0 -6.5 trigger factor compare
ABI39_RS02500 -2.0 -10.7 pyridoxine 5'-phosphate synthase compare
ABI39_RS05280 -2.0 -10.2 S41 family peptidase compare
ABI39_RS15320 -2.0 -12.0 PorT family protein compare
ABI39_RS08850 -2.0 -4.0 toprim domain-containing protein compare
ABI39_RS15000 -2.0 -2.5 F0F1 ATP synthase subunit delta compare
ABI39_RS17160 -2.0 -2.3 VWA domain-containing protein compare
ABI39_RS18740 -2.0 -6.5 ATP-binding protein compare
ABI39_RS10210 -2.0 -5.8 2-isopropylmalate synthase compare
ABI39_RS20090 -1.9 -7.3 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS14150 -1.9 -11.4 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABI39_RS07820 -1.9 -6.8 VanZ family protein compare
ABI39_RS16695 -1.9 -10.1 carbon-nitrogen hydrolase compare
ABI39_RS21055 -1.9 -3.7 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS03830 -1.9 -2.1 ribosome-associated translation inhibitor RaiA compare
ABI39_RS15610 -1.8 -1.5 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS20965 -1.8 -2.9 SPOR domain-containing protein compare
ABI39_RS00755 -1.8 -8.8 hypothetical protein compare
ABI39_RS20095 -1.8 -9.7 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS04930 -1.8 -4.1 helix-turn-helix transcriptional regulator compare
ABI39_RS14240 -1.8 -5.3 biotin synthase BioB compare
ABI39_RS18345 -1.7 -7.7 nucleoside phosphorylase compare
ABI39_RS19540 -1.7 -3.6 hypothetical protein compare
ABI39_RS20355 -1.7 -12.0 carboxypeptidase-like regulatory domain-containing protein compare
ABI39_RS15770 -1.7 -2.6 hypothetical protein compare
ABI39_RS03320 -1.7 -7.0 FecR domain-containing protein compare
ABI39_RS14835 -1.7 -2.0 DNA-binding protein compare
ABI39_RS20080 -1.7 -7.4 electron transport complex subunit RsxA compare
ABI39_RS13170 -1.7 -9.3 Crp/Fnr family transcriptional regulator compare
ABI39_RS02845 -1.7 -7.4 RluA family pseudouridine synthase compare
ABI39_RS14265 -1.7 -6.7 ATP-dependent dethiobiotin synthetase BioD compare
ABI39_RS11655 -1.7 -1.6 MFS transporter compare
ABI39_RS02285 -1.7 -3.3 DNA mismatch repair endonuclease MutL compare
ABI39_RS19985 -1.6 -1.8 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS09650 -1.6 -9.9 AraC family transcriptional regulator compare
ABI39_RS12425 -1.6 -7.1 acyl-CoA carboxylase subunit beta compare
ABI39_RS16235 -1.6 -2.2 hypothetical protein compare
ABI39_RS14255 -1.6 -5.0 DUF452 family protein compare
ABI39_RS20100 -1.6 -6.6 electron transport complex subunit RsxC compare
ABI39_RS02480 -1.6 -2.2 DJ-1/PfpI family protein compare
ABI39_RS20105 -1.6 -5.6 Fe-S cluster domain-containing protein compare
ABI39_RS01735 -1.6 -7.7 acyl-CoA dehydrogenase family protein compare
ABI39_RS06250 -1.6 -10.6 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS05405 -1.6 -7.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABI39_RS14465 -1.5 -6.1 hypothetical protein compare
ABI39_RS06235 -1.5 -5.7 UDP-galactopyranose mutase compare
ABI39_RS19945 -1.5 -4.9 aspartate kinase compare
ABI39_RS14260 -1.5 -8.1 malonyl-ACP O-methyltransferase BioC compare
ABI39_RS14245 -1.5 -10.8 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS00095 -1.5 -10.1 elongation factor G compare
ABI39_RS20435 -1.5 -6.4 chain-length determining protein compare
ABI39_RS01725 -1.5 -4.9 electron transfer flavoprotein subunit beta/FixA family protein compare
ABI39_RS17195 -1.5 -7.7 hypothetical protein compare
ABI39_RS19920 -1.4 -2.0 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS07000 -1.4 -3.3 site-specific tyrosine recombinase XerD compare
ABI39_RS00405 -1.4 -10.2 phosphoribosylformylglycinamidine synthase compare
ABI39_RS15855 -1.4 -2.7 helix-turn-helix transcriptional regulator compare
ABI39_RS12725 -1.4 -5.2 acetolactate synthase small subunit compare
ABI39_RS04730 -1.4 -1.8 Lrp/AsnC ligand binding domain-containing protein compare
ABI39_RS04950 -1.4 -2.5 DEAD/DEAH box helicase compare
ABI39_RS20395 -1.4 -2.5 DedA family protein compare
ABI39_RS06050 -1.4 -3.8 hypothetical protein compare
ABI39_RS11350 -1.4 -4.2 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS18300 -1.4 -6.8 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
ABI39_RS13010 -1.3 -4.7 hypothetical protein compare
ABI39_RS20930 -1.3 -9.2 tetratricopeptide repeat protein compare
ABI39_RS12780 -1.3 -3.5 type III pantothenate kinase compare
ABI39_RS12150 -1.3 -3.3 hotdog fold thioesterase compare
ABI39_RS10325 -1.3 -7.1 ABC-F family ATP-binding cassette domain-containing protein compare
ABI39_RS00515 -1.3 -2.4 hypothetical protein compare
ABI39_RS20440 -1.3 -7.3 SLBB domain-containing protein compare
ABI39_RS01730 -1.3 -4.5 electron transfer flavoprotein subunit alpha/FixB family protein compare
ABI39_RS17130 -1.3 -1.1 HU family DNA-binding protein compare
ABI39_RS11875 -1.3 -4.5 OmpH family outer membrane protein compare
ABI39_RS05655 -1.3 -3.2 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Glycogen; autoclaved in Phocaeicola dorei CL03T12C01

For carbon source Glycogen; autoclaved across organisms