Experiment set3S329 for Phocaeicola dorei CL03T12C01

Compare to:

Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS22100 -6.5 -2.7 hypothetical protein compare
ABI39_RS04245 -5.3 -1.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS17980 -5.1 -3.0 large-conductance mechanosensitive channel protein MscL compare
ABI39_RS19995 -5.1 -2.4 DUF4494 domain-containing protein compare
ABI39_RS22960 -4.8 -1.2 hypothetical protein compare
ABI39_RS19140 -4.7 -1.6 hypothetical protein compare
ABI39_RS02140 -4.7 -1.9 TetR/AcrR family transcriptional regulator compare
ABI39_RS14560 -4.6 -2.4 aspartate 1-decarboxylase compare
ABI39_RS02125 -4.6 -1.1 hypothetical protein compare
ABI39_RS02460 -4.5 -1.5 peptidoglycan DD-metalloendopeptidase family protein compare
ABI39_RS11490 -4.5 -1.1 hypothetical protein compare
ABI39_RS22740 -4.5 -1.1 IS66 family insertion sequence element accessory protein TnpB compare
ABI39_RS11635 -4.5 -3.6 NUDIX hydrolase compare
ABI39_RS03160 -4.5 -1.1 helix-turn-helix domain-containing protein compare
ABI39_RS09230 -4.4 -1.8 hypothetical protein compare
ABI39_RS22855 -4.4 -1.5 hypothetical protein compare
ABI39_RS02290 -4.3 -2.3 hypothetical protein compare
ABI39_RS22175 -4.3 -1.0 N-acetylmuramoyl-L-alanine amidase compare
ABI39_RS23105 -4.3 -1.0 hypothetical protein compare
ABI39_RS15820 -4.3 -1.4 hypothetical protein compare
ABI39_RS08785 -4.1 -1.0 DUF3408 domain-containing protein compare
ABI39_RS12770 -4.1 -2.6 hypothetical protein compare
ABI39_RS17645 -4.1 -1.4 TIGR03905 family TSCPD domain-containing protein compare
ABI39_RS18910 -4.0 -1.6 preprotein translocase subunit YajC compare
ABI39_RS20090 -3.9 -5.7 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS06440 -3.9 -0.9 hypothetical protein compare
ABI39_RS11805 -3.8 -0.9 hypothetical protein compare
ABI39_RS17745 -3.8 -1.3 sulfur carrier protein ThiS compare
ABI39_RS08195 -3.8 -3.1 hypothetical protein compare
ABI39_RS09685 -3.7 -1.8 hypothetical protein compare
ABI39_RS16305 -3.6 -0.9 DUF4141 domain-containing protein compare
ABI39_RS15735 -3.6 -1.2 hypothetical protein compare
ABI39_RS07655 -3.5 -0.8 peptidase M15 compare
ABI39_RS07590 -3.4 -1.6 site-specific integrase compare
ABI39_RS18220 -3.4 -3.4 3'-5' exonuclease domain-containing protein 2 compare
ABI39_RS20080 -3.3 -3.8 electron transport complex subunit RsxA compare
ABI39_RS19775 -3.3 -1.1 tRNA-Met compare
ABI39_RS13185 -3.3 -1.4 manganese efflux pump compare
ABI39_RS06165 -3.3 -0.8 GtrA family protein compare
ABI39_RS19845 -3.3 -1.1 hypothetical protein compare
ABI39_RS13000 -3.2 -5.8 sigma-54-dependent Fis family transcriptional regulator compare
ABI39_RS04695 -3.2 -2.5 shikimate kinase compare
ABI39_RS18745 -3.2 -2.2 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS04795 -3.2 -1.3 M28 family peptidase compare
ABI39_RS20175 -3.2 -2.1 translation elongation factor 4 compare
ABI39_RS02465 -3.0 -1.0 nucleoside-diphosphate kinase compare
ABI39_RS13910 -3.0 -1.0 chaperone modulator CbpM compare
ABI39_RS15760 -3.0 -1.0 hypothetical protein compare
ABI39_RS23100 -3.0 -2.8 hypothetical protein compare
ABI39_RS08305 -3.0 -2.9 DUF4831 family protein compare
ABI39_RS21350 -2.9 -2.0 aspartate--ammonia ligase compare
ABI39_RS08185 -2.9 -3.3 hemolysin III family protein compare
ABI39_RS10435 -2.8 -4.3 cofactor-independent phosphoglycerate mutase compare
ABI39_RS15480 -2.7 -2.8 tagaturonate reductase compare
ABI39_RS02480 -2.7 -2.6 DJ-1/PfpI family protein compare
ABI39_RS07070 -2.7 -4.4 peptide chain release factor N(5)-glutamine methyltransferase compare
ABI39_RS16885 -2.7 -2.1 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS12665 -2.6 -3.9 shikimate dehydrogenase compare
ABI39_RS13180 -2.5 -1.7 FAD:protein FMN transferase compare
ABI39_RS14090 -2.5 -1.6 hypothetical protein compare
ABI39_RS14685 -2.5 -2.0 methionine synthase compare
ABI39_RS09850 -2.5 -2.9 energy transducer TonB compare
ABI39_RS00250 -2.4 -3.0 chloride channel protein compare
ABI39_RS15920 -2.3 -2.3 type II toxin-antitoxin system HigB family toxin compare
ABI39_RS06010 -2.3 -2.9 polysaccharide deacetylase family protein compare
ABI39_RS10215 -2.2 -3.5 3-isopropylmalate dehydrogenase compare
ABI39_RS11880 -2.2 -0.7 hypothetical protein compare
ABI39_RS20070 -2.2 -4.2 UDP-glucose 4-epimerase GalE compare
ABI39_RS16395 -2.2 -1.3 PcfK-like family protein compare
ABI39_RS00205 -2.2 -2.7 phosphoglucosamine mutase compare
ABI39_RS22615 -2.2 -1.4 helix-turn-helix domain-containing protein compare
ABI39_RS18740 -2.2 -3.7 ATP-binding protein compare
ABI39_RS10495 -2.1 -3.7 prephenate dehydrogenase compare
ABI39_RS17150 -2.1 -3.1 hypothetical protein compare
ABI39_RS18330 -2.1 -4.3 PD40 domain-containing protein compare
ABI39_RS14390 -2.1 -2.1 ABC transporter ATP-binding protein compare
ABI39_RS08710 -2.1 -2.0 DUF3945 domain-containing protein compare
ABI39_RS07510 -2.1 -1.2 hypothetical protein compare
ABI39_RS09855 -2.0 -1.4 polyprenyl synthetase family protein compare
ABI39_RS22225 -2.0 -0.8 hypothetical protein compare
ABI39_RS11785 -2.0 -2.9 TolC family protein compare
ABI39_RS10500 -1.9 -2.7 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS04970 -1.9 -3.4 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS14070 -1.9 -0.9 DNA-binding protein compare
ABI39_RS21200 -1.9 -3.1 MFS transporter compare
ABI39_RS17160 -1.9 -1.3 VWA domain-containing protein compare
ABI39_RS03320 -1.9 -3.7 FecR domain-containing protein compare
ABI39_RS02755 -1.9 -1.3 glycosyltransferase compare
ABI39_RS14030 -1.9 -1.7 MFS transporter compare
ABI39_RS19225 -1.9 -1.1 flavodoxin compare
ABI39_RS17140 -1.9 -1.7 AAA family ATPase compare
ABI39_RS15945 -1.8 -1.1 hypothetical protein compare
ABI39_RS12500 -1.8 -1.2 class I SAM-dependent methyltransferase compare
ABI39_RS04885 -1.8 -2.9 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS11830 -1.8 -1.7 ATP phosphoribosyltransferase compare
ABI39_RS17950 -1.8 -1.6 Crp/Fnr family transcriptional regulator compare
ABI39_RS09845 -1.8 -1.9 (d)CMP kinase compare
ABI39_RS23075 -1.8 -1.9 hypothetical protein compare
ABI39_RS20350 -1.8 -1.6 nucleotidyltransferase domain-containing protein compare
ABI39_RS20395 -1.7 -2.0 DedA family protein compare
ABI39_RS20725 -1.7 -1.5 HEPN domain-containing protein compare
ABI39_RS10210 -1.7 -3.3 2-isopropylmalate synthase compare
ABI39_RS12645 -1.7 -4.3 chorismate synthase compare
ABI39_RS10430 -1.7 -4.3 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS13970 -1.7 -1.1 helix-turn-helix domain-containing protein compare
ABI39_RS11295 -1.7 -2.2 queuosine precursor transporter compare
ABI39_RS19770 -1.7 -0.9 tRNA-Asn compare
ABI39_RS22750 -1.7 -0.7 hypothetical protein compare
ABI39_RS12235 -1.7 -2.5 DUF4738 domain-containing protein compare
ABI39_RS20860 -1.7 -1.1 HU family DNA-binding protein compare
ABI39_RS08135 -1.7 -1.1 YicC family protein compare
ABI39_RS16455 -1.7 -2.9 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
ABI39_RS07790 -1.6 -3.6 M20 family metallo-hydrolase compare
ABI39_RS15265 -1.6 -1.9 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS12340 -1.6 -2.5 DUF3853 family protein compare
ABI39_RS07290 -1.6 -1.2 helix-turn-helix domain-containing protein compare
ABI39_RS03885 -1.6 -2.5 adenosine kinase compare
ABI39_RS09670 -1.6 -1.3 cardiolipin synthase compare
ABI39_RS19925 -1.6 -3.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS20085 -1.6 -1.6 electron transport complex subunit E compare
ABI39_RS04860 -1.6 -2.3 HigA family addiction module antidote protein compare
ABI39_RS06170 -1.6 -3.1 glycosyltransferase compare
ABI39_RS10640 -1.6 -3.4 serine dehydratase subunit alpha family protein compare
ABI39_RS00095 -1.6 -3.5 elongation factor G compare
ABI39_RS12425 -1.6 -3.0 acyl-CoA carboxylase subunit beta compare
ABI39_RS17195 -1.6 -4.0 hypothetical protein compare
ABI39_RS10440 -1.6 -3.6 threonine synthase compare
ABI39_RS05660 -1.6 -3.2 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS10505 -1.6 -2.6 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS21355 -1.6 -1.7 uracil-DNA glycosylase compare
ABI39_RS18420 -1.6 -1.3 helix-turn-helix transcriptional regulator compare
ABI39_RS10515 -1.6 -1.6 helix-turn-helix transcriptional regulator compare
ABI39_RS15670 -1.6 -2.7 cobalamin biosynthesis protein CobD compare
ABI39_RS19950 -1.6 -2.2 diaminopimelate decarboxylase compare
ABI39_RS09515 -1.6 -1.5 nucleoside deaminase compare
ABI39_RS20095 -1.6 -3.0 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS12715 -1.5 -2.8 dihydroxy-acid dehydratase compare
ABI39_RS21075 -1.5 -2.9 tryptophan synthase subunit alpha compare
ABI39_RS20975 -1.5 -1.5 phage holin family protein compare
ABI39_RS15510 -1.5 -2.2 cobalt-precorrin-5B (C(1))-methyltransferase compare
ABI39_RS10105 -1.5 -1.1 lipoyl synthase compare
ABI39_RS09700 -1.5 -2.6 M23 family metallopeptidase compare
ABI39_RS01360 -1.5 -2.5 hypothetical protein compare
ABI39_RS20140 -1.5 -1.3 copper homeostasis protein CutC compare
ABI39_RS12805 -1.5 -2.0 hypothetical protein compare
ABI39_RS02060 -1.5 -4.4 translocation/assembly module TamB domain-containing protein compare
ABI39_RS14465 -1.5 -2.1 hypothetical protein compare
ABI39_RS08315 -1.5 -1.7 hypoxanthine phosphoribosyltransferase compare
ABI39_RS14650 -1.4 -1.8 hypothetical protein compare
ABI39_RS16685 -1.4 -1.1 methylated-DNA--[protein]-cysteine S-methyltransferase compare
ABI39_RS18695 -1.4 -0.9 hypothetical protein compare
ABI39_RS16875 -1.4 -1.7 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS15490 -1.4 -3.0 precorrin-2 C(20)-methyltransferase compare
ABI39_RS15505 -1.4 -2.1 ABC transporter ATP-binding protein compare
ABI39_RS21060 -1.4 -3.9 anthranilate phosphoribosyltransferase compare
ABI39_RS13225 -1.4 -1.7 phosphopyruvate hydratase compare
ABI39_RS17205 -1.4 -1.9 ATP-dependent Clp protease ATP-binding subunit compare
ABI39_RS06885 -1.4 -1.4 hypothetical protein compare
ABI39_RS20100 -1.4 -2.2 electron transport complex subunit RsxC compare
ABI39_RS08050 -1.4 -2.0 DUF4488 domain-containing protein compare
ABI39_RS20730 -1.4 -2.6 nucleotidyltransferase domain-containing protein compare
ABI39_RS16675 -1.4 -1.1 thioredoxin family protein compare
ABI39_RS08850 -1.4 -0.8 toprim domain-containing protein compare
ABI39_RS04145 -1.4 -0.9 transcription elongation factor GreA compare
ABI39_RS19735 -1.4 -1.7 hypothetical protein compare
ABI39_RS18390 -1.4 -0.8 DUF3987 domain-containing protein compare
ABI39_RS13750 -1.4 -2.2 hypothetical protein compare
ABI39_RS15475 -1.4 -2.9 glucuronate isomerase compare
ABI39_RS10110 -1.4 -3.3 S9 family peptidase compare
ABI39_RS22480 -1.4 -1.2 MGMT family protein compare
ABI39_RS02190 -1.3 -1.9 tRNA 2-thiouridine(34) synthase MnmA compare
ABI39_RS10195 -1.3 -4.4 2-isopropylmalate synthase compare
ABI39_RS04905 -1.3 -1.4 hypothetical protein compare
ABI39_RS00555 -1.3 -1.3 BlaI/MecI/CopY family transcriptional regulator compare
ABI39_RS14115 -1.3 -2.0 ferritin compare
ABI39_RS06235 -1.3 -2.5 UDP-galactopyranose mutase compare
ABI39_RS16220 -1.3 -1.3 immunity 17 family protein compare
ABI39_RS09195 -1.3 -2.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS14480 -1.3 -3.8 ferrous iron transport protein B compare
ABI39_RS15375 -1.3 -2.5 sugar kinase compare
ABI39_RS17310 -1.3 -3.3 hypothetical protein compare
ABI39_RS10200 -1.3 -3.3 3-isopropylmalate dehydratase large subunit compare
ABI39_RS18300 -1.3 -2.7 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
ABI39_RS15790 -1.3 -2.1 DEAD/DEAH box helicase compare
ABI39_RS04745 -1.3 -1.2 hypothetical protein compare
ABI39_RS06055 -1.3 -2.1 phosphoribosylamine--glycine ligase compare
ABI39_RS16320 -1.3 -0.7 DUF3989 domain-containing protein compare
ABI39_RS22255 -1.3 -1.1 hypothetical protein compare
ABI39_RS02055 -1.3 -2.9 BamA/TamA family outer membrane protein compare
ABI39_RS12180 -1.3 -1.8 epoxyqueuosine reductase QueH compare
ABI39_RS02975 -1.3 -2.3 argininosuccinate synthase compare
ABI39_RS13925 -1.3 -2.5 bifunctional metallophosphatase/5'-nucleotidase compare
ABI39_RS10205 -1.3 -2.7 3-isopropylmalate dehydratase small subunit compare
ABI39_RS02870 -1.2 -2.5 acetylornithine carbamoyltransferase compare
ABI39_RS11470 -1.2 -1.4 hypothetical protein compare
ABI39_RS09915 -1.2 -0.8 DUF5056 domain-containing protein compare
ABI39_RS15650 -1.2 -2.2 cobyrinate a,c-diamide synthase compare
ABI39_RS06925 -1.2 -2.7 glycosyltransferase compare
ABI39_RS07010 -1.2 -0.8 pyruvate kinase compare
ABI39_RS03005 -1.2 -3.3 rhamnulose-1-phosphate aldolase compare


Specific Phenotypes

None in this experiment

For Phocaeicola dorei CL03T12C01 in carbon source experiments

For carbon source Arabinoxylan (Rye Flour); autoclaved across organisms