Experiment set3S328 for Phocaeicola dorei CL03T12C01

Compare to:

Galactan from Potato; filtered 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS07790 -7.5 -5.1 M20 family metallo-hydrolase compare
ABI39_RS02980 -7.2 -4.9 N-acetyltransferase compare
ABI39_RS10495 -6.9 -4.7 prephenate dehydrogenase compare
ABI39_RS02975 -6.9 -7.8 argininosuccinate synthase compare
ABI39_RS02875 -6.8 -6.7 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS02870 -6.7 -5.4 acetylornithine carbamoyltransferase compare
ABI39_RS07095 -6.5 -15.3 argininosuccinate lyase compare
ABI39_RS12675 -6.4 -3.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS02880 -6.4 -8.7 glutamate 5-kinase compare
ABI39_RS04685 -6.2 -5.2 acetylglutamate kinase compare
ABI39_RS02970 -6.2 -6.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS19930 -6.2 -4.0 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS21075 -6.0 -4.6 tryptophan synthase subunit alpha compare
ABI39_RS07005 -5.7 -5.3 type II 3-dehydroquinate dehydratase compare
ABI39_RS21065 -5.7 -5.6 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS04695 -5.5 -5.0 shikimate kinase compare
ABI39_RS19925 -5.5 -4.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS10435 -5.5 -8.4 cofactor-independent phosphoglycerate mutase compare
ABI39_RS10505 -5.4 -8.9 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS02315 -5.3 -6.3 IMP dehydrogenase compare
ABI39_RS12715 -5.2 -10.0 dihydroxy-acid dehydratase compare
ABI39_RS10440 -5.2 -6.5 threonine synthase compare
ABI39_RS10430 -5.1 -12.0 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS12645 -5.1 -13.6 chorismate synthase compare
ABI39_RS10195 -5.1 -8.2 2-isopropylmalate synthase compare
ABI39_RS00405 -5.1 -16.4 phosphoribosylformylglycinamidine synthase compare
ABI39_RS12665 -5.1 -4.9 shikimate dehydrogenase compare
ABI39_RS16910 -5.0 -8.6 3-phosphoglycerate dehydrogenase compare
ABI39_RS21045 -5.0 -3.4 tryptophan synthase subunit beta compare
ABI39_RS02960 -5.0 -9.7 pyrroline-5-carboxylate reductase compare
ABI39_RS10510 -4.9 -7.9 prephenate dehydratase compare
ABI39_RS12720 -4.9 -10.5 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS16905 -4.9 -9.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS11830 -4.8 -2.9 ATP phosphoribosyltransferase compare
ABI39_RS10260 -4.8 -8.1 adenylosuccinate synthase compare
ABI39_RS17420 -4.8 -7.2 serine hydroxymethyltransferase compare
ABI39_RS10215 -4.8 -9.7 3-isopropylmalate dehydrogenase compare
ABI39_RS10205 -4.8 -4.6 3-isopropylmalate dehydratase small subunit compare
ABI39_RS17195 -4.7 -7.2 hypothetical protein compare
ABI39_RS21060 -4.7 -8.0 anthranilate phosphoribosyltransferase compare
ABI39_RS15380 -4.7 -2.5 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
ABI39_RS12735 -4.7 -7.2 ketol-acid reductoisomerase compare
ABI39_RS11405 -4.7 -10.0 hypothetical protein compare
ABI39_RS05660 -4.7 -8.0 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS11835 -4.6 -3.2 histidinol dehydrogenase compare
ABI39_RS15375 -4.5 -10.8 sugar kinase compare
ABI39_RS06670 -4.5 -10.8 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS06055 -4.4 -6.3 phosphoribosylamine--glycine ligase compare
ABI39_RS01655 -4.3 -9.3 methylmalonyl-CoA mutase compare
ABI39_RS08850 -4.3 -2.9 toprim domain-containing protein compare
ABI39_RS06620 -4.3 -1.4 HU family DNA-binding protein compare
ABI39_RS10500 -4.2 -2.9 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS11650 -4.2 -7.9 galactokinase compare
ABI39_RS20070 -4.2 -4.1 UDP-glucose 4-epimerase GalE compare
ABI39_RS10640 -4.1 -9.5 serine dehydratase subunit alpha family protein compare
ABI39_RS06010 -4.1 -5.7 polysaccharide deacetylase family protein compare
ABI39_RS12425 -4.1 -7.4 acyl-CoA carboxylase subunit beta compare
ABI39_RS14560 -4.1 -2.0 aspartate 1-decarboxylase compare
ABI39_RS11840 -4.0 -3.9 histidinol-phosphate transaminase compare
ABI39_RS10200 -4.0 -11.6 3-isopropylmalate dehydratase large subunit compare
ABI39_RS11845 -4.0 -5.5 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS16620 -4.0 -0.9 phage integrase SAM-like domain-containing protein compare
ABI39_RS20085 -4.0 -5.1 electron transport complex subunit E compare
ABI39_RS00475 -4.0 -4.0 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS02290 -3.9 -2.0 hypothetical protein compare
ABI39_RS00770 -3.9 -10.1 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS12420 -3.9 -4.6 OadG family protein compare
ABI39_RS10870 -3.9 -8.6 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS06675 -3.8 -6.2 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS14465 -3.8 -7.3 hypothetical protein compare
ABI39_RS04245 -3.8 -1.2 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS20100 -3.7 -6.8 electron transport complex subunit RsxC compare
ABI39_RS20090 -3.7 -5.7 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS21050 -3.7 -6.7 anthranilate synthase component I family protein compare
ABI39_RS06380 -3.7 -6.5 GH3 auxin-responsive promoter family protein compare
ABI39_RS15320 -3.7 -11.8 PorT family protein compare
ABI39_RS19985 -3.7 -1.5 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS12770 -3.6 -2.1 hypothetical protein compare
ABI39_RS16305 -3.5 -0.8 DUF4141 domain-containing protein compare
ABI39_RS20080 -3.4 -4.5 electron transport complex subunit RsxA compare
ABI39_RS10210 -3.4 -8.1 2-isopropylmalate synthase compare
ABI39_RS15665 -3.4 -5.6 pyridoxal phosphate-dependent class II aminotransferase compare
ABI39_RS01650 -3.4 -7.4 methylmalonyl-CoA mutase small subunit compare
ABI39_RS09245 -3.3 -10.6 cardiolipin synthase compare
ABI39_RS00205 -3.3 -2.3 phosphoglucosamine mutase compare
ABI39_RS09685 -3.3 -1.5 hypothetical protein compare
ABI39_RS20095 -3.2 -8.3 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS10110 -3.2 -10.3 S9 family peptidase compare
ABI39_RS19385 -3.2 -2.1 hypothetical protein compare
ABI39_RS18330 -3.2 -8.5 PD40 domain-containing protein compare
ABI39_RS19950 -3.2 -3.1 diaminopimelate decarboxylase compare
ABI39_RS01360 -3.2 -6.1 hypothetical protein compare
ABI39_RS06995 -3.2 -6.9 tetratricopeptide repeat protein compare
ABI39_RS20355 -3.2 -10.9 carboxypeptidase-like regulatory domain-containing protein compare
ABI39_RS20930 -3.1 -13.1 tetratricopeptide repeat protein compare
ABI39_RS08305 -3.1 -5.8 DUF4831 family protein compare
ABI39_RS04690 -3.1 -9.5 biosynthetic arginine decarboxylase compare
ABI39_RS19935 -3.0 -5.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS15365 -3.0 -2.6 altronate dehydratase compare
ABI39_RS08185 -3.0 -5.1 hemolysin III family protein compare
ABI39_RS14265 -3.0 -6.9 ATP-dependent dethiobiotin synthetase BioD compare
ABI39_RS06235 -3.0 -6.2 UDP-galactopyranose mutase compare
ABI39_RS15400 -2.9 -6.8 TraR/DksA C4-type zinc finger protein compare
ABI39_RS01415 -2.9 -2.0 branched-chain amino acid aminotransferase compare
ABI39_RS09845 -2.8 -1.8 (d)CMP kinase compare
ABI39_RS15475 -2.8 -8.2 glucuronate isomerase compare
ABI39_RS14085 -2.8 -0.9 hypothetical protein compare
ABI39_RS13185 -2.8 -1.1 manganese efflux pump compare
ABI39_RS04280 -2.8 -3.2 DUF4292 domain-containing protein compare
ABI39_RS15480 -2.8 -5.4 tagaturonate reductase compare
ABI39_RS04795 -2.7 -1.1 M28 family peptidase compare
ABI39_RS09515 -2.7 -2.8 nucleoside deaminase compare
ABI39_RS15410 -2.7 -5.2 DUF4296 domain-containing protein compare
ABI39_RS15415 -2.7 -4.3 hypothetical protein compare
ABI39_RS08195 -2.7 -4.2 hypothetical protein compare
ABI39_RS17950 -2.7 -1.5 Crp/Fnr family transcriptional regulator compare
ABI39_RS17335 -2.6 -8.4 phosphatidylinositol-4-phosphate 5-kinase compare
ABI39_RS06220 -2.6 -7.7 glycosyltransferase family 2 protein compare
ABI39_RS02965 -2.6 -6.7 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS09850 -2.6 -3.5 energy transducer TonB compare
ABI39_RS03320 -2.6 -10.6 FecR domain-containing protein compare
ABI39_RS18745 -2.6 -2.5 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS14245 -2.6 -8.6 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS14030 -2.5 -2.9 MFS transporter compare
ABI39_RS00515 -2.5 -2.3 hypothetical protein compare
ABI39_RS18740 -2.4 -4.3 ATP-binding protein compare
ABI39_RS03005 -2.4 -6.4 rhamnulose-1-phosphate aldolase compare
ABI39_RS05280 -2.3 -11.5 S41 family peptidase compare
ABI39_RS02500 -2.3 -5.3 pyridoxine 5'-phosphate synthase compare
ABI39_RS09040 -2.3 -8.9 MFS transporter compare
ABI39_RS16445 -2.3 -2.0 alpha-ribazole phosphatase compare
ABI39_RS02470 -2.3 -3.4 ATP-dependent DNA helicase RecG compare
ABI39_RS14260 -2.2 -6.9 malonyl-ACP O-methyltransferase BioC compare
ABI39_RS21350 -2.2 -1.4 aspartate--ammonia ligase compare
ABI39_RS15615 -2.2 -2.0 cysteine-rich CWC family protein compare
ABI39_RS04930 -2.2 -3.5 helix-turn-helix transcriptional regulator compare
ABI39_RS16885 -2.2 -1.6 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS10650 -2.2 -10.5 AraC family transcriptional regulator compare
ABI39_RS16460 -2.1 -5.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
ABI39_RS16385 -2.1 -1.6 hypothetical protein compare
ABI39_RS20975 -2.1 -1.8 phage holin family protein compare
ABI39_RS04460 -2.1 -6.8 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS12415 -2.1 -1.7 biotin/lipoyl-binding protein compare
ABI39_RS14255 -2.1 -2.2 DUF452 family protein compare
ABI39_RS12725 -2.1 -3.5 acetolactate synthase small subunit compare
ABI39_RS14250 -2.1 -6.4 8-amino-7-oxononanoate synthase compare
ABI39_RS14715 -2.1 -3.3 RidA family protein compare
ABI39_RS11545 -2.1 -6.3 hypothetical protein compare
ABI39_RS16880 -2.0 -1.4 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS18385 -2.0 -0.9 helix-turn-helix domain-containing protein compare
ABI39_RS08135 -2.0 -1.3 YicC family protein compare
ABI39_RS13835 -2.0 -1.9 DUF3037 domain-containing protein compare
ABI39_RS19945 -2.0 -7.1 aspartate kinase compare
ABI39_RS09575 -1.9 -1.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS00410 -1.9 -2.3 response regulator compare
ABI39_RS14235 -1.9 -1.7 hypothetical protein compare
ABI39_RS17140 -1.9 -1.2 AAA family ATPase compare
ABI39_RS06250 -1.9 -6.7 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS19920 -1.9 -3.9 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS13170 -1.9 -7.3 Crp/Fnr family transcriptional regulator compare
ABI39_RS16870 -1.9 -2.2 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS17180 -1.9 -4.1 phosphatase PAP2 family protein compare
ABI39_RS05175 -1.9 -3.3 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS17310 -1.9 -7.6 hypothetical protein compare
ABI39_RS12430 -1.9 -0.6 methylmalonyl-CoA epimerase compare
ABI39_RS15500 -1.8 -3.5 iron ABC transporter permease compare
ABI39_RS17965 -1.8 -2.2 YegS/Rv2252/BmrU family lipid kinase compare
ABI39_RS17320 -1.8 -1.8 YhcH/YjgK/YiaL family protein compare
ABI39_RS04675 -1.8 -0.8 hypothetical protein compare
ABI39_RS16450 -1.7 -4.1 adenosylcobinamide-GDP ribazoletransferase compare
ABI39_RS15765 -1.7 -0.9 hypothetical protein compare
ABI39_RS01730 -1.7 -4.7 electron transfer flavoprotein subunit alpha/FixB family protein compare
ABI39_RS07735 -1.7 -3.2 phosphatase compare
ABI39_RS15610 -1.7 -0.8 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS19355 -1.7 -2.7 EamA family transporter compare
ABI39_RS10090 -1.7 -8.9 hypothetical protein compare
ABI39_RS04700 -1.7 -3.0 type I DNA topoisomerase compare
ABI39_RS15515 -1.7 -5.1 precorrin-4 C(11)-methyltransferase compare
ABI39_RS04425 -1.7 -5.2 hypothetical protein compare
ABI39_RS12170 -1.7 -0.6 MarR family transcriptional regulator compare
ABI39_RS08035 -1.7 -1.1 adenylosuccinate lyase compare
ABI39_RS14240 -1.7 -2.9 biotin synthase BioB compare
ABI39_RS04860 -1.6 -1.6 HigA family addiction module antidote protein compare
ABI39_RS17175 -1.6 -3.1 tetratricopeptide repeat protein compare
ABI39_RS23150 -1.6 -0.6 S26 family signal peptidase compare
ABI39_RS15650 -1.6 -3.9 cobyrinate a,c-diamide synthase compare
ABI39_RS15660 -1.6 -5.2 cobyric acid synthase compare
ABI39_RS15505 -1.5 -4.2 ABC transporter ATP-binding protein compare
ABI39_RS18420 -1.5 -1.4 helix-turn-helix transcriptional regulator compare
ABI39_RS16695 -1.5 -5.2 carbon-nitrogen hydrolase compare
ABI39_RS09830 -1.5 -3.3 methylmalonyl Co-A mutase-associated GTPase MeaB compare
ABI39_RS02350 -1.5 -2.8 ABC transporter permease compare
ABI39_RS06920 -1.5 -2.8 glycosyltransferase compare
ABI39_RS20105 -1.5 -3.2 Fe-S cluster domain-containing protein compare
ABI39_RS09050 -1.5 -7.1 PTS sugar transporter subunit IIC compare
ABI39_RS07815 -1.5 -2.0 RNA polymerase sigma factor compare
ABI39_RS15950 -1.5 -1.9 hypothetical protein compare
ABI39_RS16895 -1.5 -1.8 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS11660 -1.5 -4.0 galactose mutarotase compare
ABI39_RS04455 -1.5 -5.7 TonB-dependent receptor compare


Specific Phenotypes

None in this experiment

For Phocaeicola dorei CL03T12C01 in carbon source experiments

For carbon source Galactan from Potato; filtered across organisms