Experiment set3S327 for Phocaeicola dorei CL03T12C01

Compare to:

Galactan from Potato; filtered 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS04695 -7.3 -4.8 shikimate kinase compare
ABI39_RS02975 -6.8 -8.0 argininosuccinate synthase compare
ABI39_RS19925 -6.7 -3.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS07095 -6.7 -13.6 argininosuccinate lyase compare
ABI39_RS16910 -6.6 -4.6 3-phosphoglycerate dehydrogenase compare
ABI39_RS02870 -6.6 -5.7 acetylornithine carbamoyltransferase compare
ABI39_RS07790 -6.1 -7.3 M20 family metallo-hydrolase compare
ABI39_RS02970 -6.1 -5.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS19930 -6.1 -4.2 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS07005 -5.9 -4.5 type II 3-dehydroquinate dehydratase compare
ABI39_RS21060 -5.9 -7.4 anthranilate phosphoribosyltransferase compare
ABI39_RS04685 -5.8 -5.6 acetylglutamate kinase compare
ABI39_RS02980 -5.8 -7.4 N-acetyltransferase compare
ABI39_RS16905 -5.7 -7.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS10260 -5.7 -8.6 adenylosuccinate synthase compare
ABI39_RS12645 -5.6 -13.0 chorismate synthase compare
ABI39_RS10495 -5.6 -5.8 prephenate dehydrogenase compare
ABI39_RS10440 -5.5 -6.2 threonine synthase compare
ABI39_RS19935 -5.3 -7.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS00475 -5.3 -4.1 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS11650 -5.3 -7.2 galactokinase compare
ABI39_RS02875 -5.2 -10.4 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS21075 -5.0 -4.4 tryptophan synthase subunit alpha compare
ABI39_RS06055 -5.0 -6.8 phosphoribosylamine--glycine ligase compare
ABI39_RS00405 -4.9 -15.8 phosphoribosylformylglycinamidine synthase compare
ABI39_RS02315 -4.8 -8.0 IMP dehydrogenase compare
ABI39_RS10205 -4.8 -4.8 3-isopropylmalate dehydratase small subunit compare
ABI39_RS02880 -4.7 -8.5 glutamate 5-kinase compare
ABI39_RS10430 -4.7 -12.9 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS05660 -4.7 -7.8 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS11830 -4.6 -3.0 ATP phosphoribosyltransferase compare
ABI39_RS12735 -4.6 -7.0 ketol-acid reductoisomerase compare
ABI39_RS10505 -4.5 -9.2 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS12665 -4.5 -6.2 shikimate dehydrogenase compare
ABI39_RS02960 -4.5 -8.6 pyrroline-5-carboxylate reductase compare
ABI39_RS15380 -4.5 -2.4 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
ABI39_RS12715 -4.4 -10.8 dihydroxy-acid dehydratase compare
ABI39_RS10510 -4.4 -8.2 prephenate dehydratase compare
ABI39_RS10200 -4.3 -12.5 3-isopropylmalate dehydratase large subunit compare
ABI39_RS18330 -4.3 -7.8 PD40 domain-containing protein compare
ABI39_RS06010 -4.3 -5.6 polysaccharide deacetylase family protein compare
ABI39_RS11835 -4.2 -4.1 histidinol dehydrogenase compare
ABI39_RS00770 -4.1 -10.9 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS08195 -4.1 -4.6 hypothetical protein compare
ABI39_RS06380 -4.1 -6.4 GH3 auxin-responsive promoter family protein compare
ABI39_RS20070 -4.1 -4.0 UDP-glucose 4-epimerase GalE compare
ABI39_RS10215 -4.0 -8.3 3-isopropylmalate dehydrogenase compare
ABI39_RS10435 -4.0 -8.3 cofactor-independent phosphoglycerate mutase compare
ABI39_RS10195 -4.0 -7.2 2-isopropylmalate synthase compare
ABI39_RS14465 -3.9 -7.3 hypothetical protein compare
ABI39_RS10640 -3.9 -11.0 serine dehydratase subunit alpha family protein compare
ABI39_RS12720 -3.9 -11.6 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS15475 -3.9 -10.4 glucuronate isomerase compare
ABI39_RS06670 -3.9 -10.6 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS14560 -3.9 -2.1 aspartate 1-decarboxylase compare
ABI39_RS06995 -3.9 -6.9 tetratricopeptide repeat protein compare
ABI39_RS02290 -3.8 -2.1 hypothetical protein compare
ABI39_RS20095 -3.7 -8.0 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS21065 -3.7 -5.2 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS12425 -3.7 -7.1 acyl-CoA carboxylase subunit beta compare
ABI39_RS17195 -3.7 -9.3 hypothetical protein compare
ABI39_RS01655 -3.7 -9.9 methylmalonyl-CoA mutase compare
ABI39_RS11845 -3.7 -5.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS17420 -3.6 -6.3 serine hydroxymethyltransferase compare
ABI39_RS12420 -3.6 -4.3 OadG family protein compare
ABI39_RS21050 -3.6 -6.2 anthranilate synthase component I family protein compare
ABI39_RS15410 -3.6 -7.9 DUF4296 domain-containing protein compare
ABI39_RS01360 -3.6 -5.9 hypothetical protein compare
ABI39_RS09245 -3.5 -11.4 cardiolipin synthase compare
ABI39_RS11405 -3.4 -9.9 hypothetical protein compare
ABI39_RS11840 -3.4 -4.0 histidinol-phosphate transaminase compare
ABI39_RS20080 -3.4 -5.5 electron transport complex subunit RsxA compare
ABI39_RS13845 -3.4 -0.8 histone H1 compare
ABI39_RS12770 -3.4 -2.2 hypothetical protein compare
ABI39_RS12415 -3.4 -2.5 biotin/lipoyl-binding protein compare
ABI39_RS12675 -3.4 -3.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS02965 -3.3 -8.0 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS15375 -3.3 -9.5 sugar kinase compare
ABI39_RS20085 -3.3 -3.9 electron transport complex subunit E compare
ABI39_RS10110 -3.3 -10.2 S9 family peptidase compare
ABI39_RS15320 -3.3 -10.7 PorT family protein compare
ABI39_RS04690 -3.2 -9.2 biosynthetic arginine decarboxylase compare
ABI39_RS12430 -3.2 -0.8 methylmalonyl-CoA epimerase compare
ABI39_RS10500 -3.1 -4.2 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS00205 -3.1 -2.2 phosphoglucosamine mutase compare
ABI39_RS20355 -3.1 -12.1 carboxypeptidase-like regulatory domain-containing protein compare
ABI39_RS04245 -3.1 -1.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS10870 -3.0 -6.5 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS04930 -3.0 -3.0 helix-turn-helix transcriptional regulator compare
ABI39_RS17180 -3.0 -7.0 phosphatase PAP2 family protein compare
ABI39_RS02140 -3.0 -1.7 TetR/AcrR family transcriptional regulator compare
ABI39_RS01650 -3.0 -6.4 methylmalonyl-CoA mutase small subunit compare
ABI39_RS08305 -2.9 -6.2 DUF4831 family protein compare
ABI39_RS21045 -2.9 -5.2 tryptophan synthase subunit beta compare
ABI39_RS06235 -2.9 -7.0 UDP-galactopyranose mutase compare
ABI39_RS15480 -2.8 -5.6 tagaturonate reductase compare
ABI39_RS03320 -2.8 -7.2 FecR domain-containing protein compare
ABI39_RS19950 -2.8 -3.3 diaminopimelate decarboxylase compare
ABI39_RS14030 -2.8 -3.0 MFS transporter compare
ABI39_RS01415 -2.7 -1.9 branched-chain amino acid aminotransferase compare
ABI39_RS20100 -2.7 -7.7 electron transport complex subunit RsxC compare
ABI39_RS19385 -2.7 -2.3 hypothetical protein compare
ABI39_RS06220 -2.7 -10.8 glycosyltransferase family 2 protein compare
ABI39_RS06675 -2.6 -5.2 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS20090 -2.6 -5.9 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS20105 -2.6 -4.1 Fe-S cluster domain-containing protein compare
ABI39_RS10210 -2.6 -6.3 2-isopropylmalate synthase compare
ABI39_RS00515 -2.6 -2.1 hypothetical protein compare
ABI39_RS19985 -2.6 -1.5 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS09850 -2.6 -3.5 energy transducer TonB compare
ABI39_RS15415 -2.6 -3.7 hypothetical protein compare
ABI39_RS04795 -2.6 -1.1 M28 family peptidase compare
ABI39_RS16620 -2.5 -0.9 phage integrase SAM-like domain-containing protein compare
ABI39_RS15365 -2.5 -3.0 altronate dehydratase compare
ABI39_RS10650 -2.5 -10.9 AraC family transcriptional regulator compare
ABI39_RS16885 -2.5 -1.5 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS20930 -2.5 -12.3 tetratricopeptide repeat protein compare
ABI39_RS15665 -2.5 -2.9 pyridoxal phosphate-dependent class II aminotransferase compare
ABI39_RS17950 -2.5 -1.5 Crp/Fnr family transcriptional regulator compare
ABI39_RS02500 -2.4 -8.1 pyridoxine 5'-phosphate synthase compare
ABI39_RS16385 -2.4 -1.8 hypothetical protein compare
ABI39_RS11545 -2.4 -6.4 hypothetical protein compare
ABI39_RS17745 -2.3 -1.4 sulfur carrier protein ThiS compare
ABI39_RS19920 -2.3 -4.0 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS18745 -2.3 -2.7 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS09040 -2.3 -10.3 MFS transporter compare
ABI39_RS19945 -2.2 -8.8 aspartate kinase compare
ABI39_RS17175 -2.2 -2.2 tetratricopeptide repeat protein compare
ABI39_RS05280 -2.2 -11.2 S41 family peptidase compare
ABI39_RS09845 -2.2 -2.1 (d)CMP kinase compare
ABI39_RS03005 -2.2 -8.5 rhamnulose-1-phosphate aldolase compare
ABI39_RS09830 -2.2 -4.9 methylmalonyl Co-A mutase-associated GTPase MeaB compare
ABI39_RS16875 -2.2 -2.1 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS23125 -2.1 -1.0 hypothetical protein compare
ABI39_RS09195 -2.1 -2.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS15660 -2.1 -5.8 cobyric acid synthase compare
ABI39_RS15760 -2.1 -1.0 hypothetical protein compare
ABI39_RS17335 -2.1 -8.1 phosphatidylinositol-4-phosphate 5-kinase compare
ABI39_RS15400 -2.0 -7.2 TraR/DksA C4-type zinc finger protein compare
ABI39_RS06620 -2.0 -1.4 HU family DNA-binding protein compare
ABI39_RS14715 -2.0 -4.1 RidA family protein compare
ABI39_RS21350 -2.0 -1.4 aspartate--ammonia ligase compare
ABI39_RS18910 -2.0 -1.3 preprotein translocase subunit YajC compare
ABI39_RS15515 -2.0 -7.9 precorrin-4 C(11)-methyltransferase compare
ABI39_RS16305 -2.0 -0.7 DUF4141 domain-containing protein compare
ABI39_RS04455 -2.0 -7.8 TonB-dependent receptor compare
ABI39_RS23105 -2.0 -0.8 hypothetical protein compare
ABI39_RS08850 -2.0 -2.5 toprim domain-containing protein compare
ABI39_RS14245 -1.9 -8.9 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS14995 -1.9 -1.8 F0F1 ATP synthase subunit B compare
ABI39_RS04460 -1.9 -6.0 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS15650 -1.9 -4.2 cobyrinate a,c-diamide synthase compare
ABI39_RS17310 -1.9 -8.7 hypothetical protein compare
ABI39_RS14260 -1.9 -5.7 malonyl-ACP O-methyltransferase BioC compare
ABI39_RS06250 -1.9 -6.2 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS14265 -1.8 -6.9 ATP-dependent dethiobiotin synthetase BioD compare
ABI39_RS02470 -1.8 -3.4 ATP-dependent DNA helicase RecG compare
ABI39_RS16450 -1.8 -3.3 adenosylcobinamide-GDP ribazoletransferase compare
ABI39_RS10160 -1.8 -4.2 FecR domain-containing protein compare
ABI39_RS07655 -1.8 -0.6 peptidase M15 compare
ABI39_RS04425 -1.8 -4.7 hypothetical protein compare
ABI39_RS08185 -1.8 -2.9 hemolysin III family protein compare
ABI39_RS16460 -1.8 -5.6 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
ABI39_RS17150 -1.8 -1.2 hypothetical protein compare
ABI39_RS12150 -1.7 -2.2 hotdog fold thioesterase compare
ABI39_RS09770 -1.7 -4.1 DUF349 domain-containing protein compare
ABI39_RS09575 -1.7 -1.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS15525 -1.7 -4.7 precorrin-3B C(17)-methyltransferase compare
ABI39_RS14235 -1.7 -1.8 hypothetical protein compare
ABI39_RS17140 -1.7 -1.1 AAA family ATPase compare
ABI39_RS15670 -1.7 -5.3 cobalamin biosynthesis protein CobD compare
ABI39_RS14085 -1.7 -0.8 hypothetical protein compare
ABI39_RS04280 -1.7 -3.0 DUF4292 domain-containing protein compare
ABI39_RS13185 -1.7 -0.9 manganese efflux pump compare
ABI39_RS07420 -1.7 -2.4 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS09685 -1.7 -1.2 hypothetical protein compare
ABI39_RS12170 -1.7 -0.7 MarR family transcriptional regulator compare
ABI39_RS14240 -1.6 -3.3 biotin synthase BioB compare
ABI39_RS00760 -1.6 -1.1 YjgP/YjgQ family permease compare
ABI39_RS22740 -1.6 -0.8 IS66 family insertion sequence element accessory protein TnpB compare
ABI39_RS02480 -1.6 -2.2 DJ-1/PfpI family protein compare
ABI39_RS16870 -1.6 -2.1 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS16880 -1.6 -1.5 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS09515 -1.5 -2.1 nucleoside deaminase compare
ABI39_RS14250 -1.5 -5.1 8-amino-7-oxononanoate synthase compare
ABI39_RS15495 -1.5 -3.8 ABC transporter substrate-binding protein compare
ABI39_RS16455 -1.5 -5.2 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
ABI39_RS16695 -1.5 -5.4 carbon-nitrogen hydrolase compare
ABI39_RS00520 -1.5 -5.0 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABI39_RS06115 -1.5 -5.7 phosphatase PAP2 family protein compare
ABI39_RS10085 -1.5 -1.7 enoyl-ACP reductase compare
ABI39_RS11485 -1.5 -2.6 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS07090 -1.4 -0.7 hypothetical protein compare
ABI39_RS09795 -1.4 -1.5 nucleoside deaminase compare
ABI39_RS20110 -1.4 -2.6 SoxR reducing system RseC family protein compare
ABI39_RS04145 -1.4 -0.8 transcription elongation factor GreA compare
ABI39_RS18740 -1.4 -3.7 ATP-binding protein compare
ABI39_RS04505 -1.4 -3.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS04950 -1.4 -1.7 DEAD/DEAH box helicase compare
ABI39_RS08035 -1.4 -1.0 adenylosuccinate lyase compare


Specific Phenotypes

None in this experiment

For Phocaeicola dorei CL03T12C01 in carbon source experiments

For carbon source Galactan from Potato; filtered across organisms