Experiment set3S325 for Phocaeicola dorei CL03T12C01

Compare to:

Galactan from Potato; autoclaved 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS10205 -8.4 -4.5 3-isopropylmalate dehydratase small subunit compare
ABI39_RS07790 -8.3 -5.8 M20 family metallo-hydrolase compare
ABI39_RS04685 -7.6 -5.0 acetylglutamate kinase compare
ABI39_RS02980 -7.4 -7.2 N-acetyltransferase compare
ABI39_RS02970 -7.3 -7.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS07095 -7.2 -16.8 argininosuccinate lyase compare
ABI39_RS02975 -7.2 -9.1 argininosuccinate synthase compare
ABI39_RS21065 -7.1 -6.1 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS00405 -7.0 -17.7 phosphoribosylformylglycinamidine synthase compare
ABI39_RS04695 -6.7 -6.3 shikimate kinase compare
ABI39_RS16910 -6.6 -9.1 3-phosphoglycerate dehydrogenase compare
ABI39_RS02960 -6.5 -11.7 pyrroline-5-carboxylate reductase compare
ABI39_RS02870 -6.4 -6.3 acetylornithine carbamoyltransferase compare
ABI39_RS06670 -6.3 -10.6 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS19930 -6.3 -4.2 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS06055 -6.3 -7.1 phosphoribosylamine--glycine ligase compare
ABI39_RS05660 -6.3 -7.4 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS10215 -6.2 -10.4 3-isopropylmalate dehydrogenase compare
ABI39_RS02875 -6.2 -9.1 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS10510 -6.0 -7.9 prephenate dehydratase compare
ABI39_RS07005 -6.0 -5.2 type II 3-dehydroquinate dehydratase compare
ABI39_RS10495 -5.9 -7.1 prephenate dehydrogenase compare
ABI39_RS02880 -5.9 -9.8 glutamate 5-kinase compare
ABI39_RS19935 -5.9 -6.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS10505 -5.9 -11.4 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS10260 -5.9 -8.5 adenylosuccinate synthase compare
ABI39_RS12735 -5.9 -7.0 ketol-acid reductoisomerase compare
ABI39_RS12645 -5.9 -13.5 chorismate synthase compare
ABI39_RS12715 -5.8 -12.2 dihydroxy-acid dehydratase compare
ABI39_RS10430 -5.7 -14.4 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS10435 -5.7 -10.4 cofactor-independent phosphoglycerate mutase compare
ABI39_RS12675 -5.7 -3.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS10440 -5.6 -7.9 threonine synthase compare
ABI39_RS21060 -5.6 -9.1 anthranilate phosphoribosyltransferase compare
ABI39_RS11835 -5.5 -3.8 histidinol dehydrogenase compare
ABI39_RS21045 -5.5 -5.4 tryptophan synthase subunit beta compare
ABI39_RS00770 -5.5 -14.0 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS02315 -5.5 -9.1 IMP dehydrogenase compare
ABI39_RS11840 -5.4 -3.7 histidinol-phosphate transaminase compare
ABI39_RS17420 -5.4 -8.8 serine hydroxymethyltransferase compare
ABI39_RS15380 -5.4 -2.7 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
ABI39_RS12720 -5.3 -13.8 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS10200 -5.3 -13.9 3-isopropylmalate dehydratase large subunit compare
ABI39_RS11650 -5.3 -8.0 galactokinase compare
ABI39_RS17195 -5.3 -10.7 hypothetical protein compare
ABI39_RS08195 -5.3 -5.0 hypothetical protein compare
ABI39_RS16905 -5.3 -10.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS12420 -5.2 -5.1 OadG family protein compare
ABI39_RS10195 -5.2 -9.3 2-isopropylmalate synthase compare
ABI39_RS06380 -5.2 -7.9 GH3 auxin-responsive promoter family protein compare
ABI39_RS06675 -5.2 -6.7 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS20070 -5.1 -5.0 UDP-glucose 4-epimerase GalE compare
ABI39_RS12665 -5.1 -7.9 shikimate dehydrogenase compare
ABI39_RS12415 -5.0 -3.8 biotin/lipoyl-binding protein compare
ABI39_RS06010 -4.9 -7.0 polysaccharide deacetylase family protein compare
ABI39_RS01360 -4.9 -6.7 hypothetical protein compare
ABI39_RS06995 -4.9 -8.1 tetratricopeptide repeat protein compare
ABI39_RS19925 -4.9 -6.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS02290 -4.8 -2.6 hypothetical protein compare
ABI39_RS21050 -4.8 -6.4 anthranilate synthase component I family protein compare
ABI39_RS11845 -4.8 -6.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS11405 -4.7 -9.8 hypothetical protein compare
ABI39_RS00475 -4.7 -5.0 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS15375 -4.6 -11.1 sugar kinase compare
ABI39_RS11830 -4.6 -4.0 ATP phosphoribosyltransferase compare
ABI39_RS08305 -4.6 -7.6 DUF4831 family protein compare
ABI39_RS18330 -4.5 -10.7 PD40 domain-containing protein compare
ABI39_RS12770 -4.5 -2.8 hypothetical protein compare
ABI39_RS01655 -4.5 -9.5 methylmalonyl-CoA mutase compare
ABI39_RS20085 -4.4 -5.8 electron transport complex subunit E compare
ABI39_RS15365 -4.3 -3.5 altronate dehydratase compare
ABI39_RS09685 -4.2 -2.0 hypothetical protein compare
ABI39_RS02965 -4.2 -10.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS12425 -4.1 -9.9 acyl-CoA carboxylase subunit beta compare
ABI39_RS10110 -4.1 -12.1 S9 family peptidase compare
ABI39_RS10210 -4.0 -11.3 2-isopropylmalate synthase compare
ABI39_RS21075 -3.9 -3.9 tryptophan synthase subunit alpha compare
ABI39_RS01415 -3.9 -2.7 branched-chain amino acid aminotransferase compare
ABI39_RS04690 -3.9 -10.9 biosynthetic arginine decarboxylase compare
ABI39_RS19950 -3.8 -4.6 diaminopimelate decarboxylase compare
ABI39_RS10640 -3.8 -10.5 serine dehydratase subunit alpha family protein compare
ABI39_RS10500 -3.8 -4.4 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS20095 -3.8 -10.4 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS12430 -3.8 -0.9 methylmalonyl-CoA epimerase compare
ABI39_RS09845 -3.8 -2.6 (d)CMP kinase compare
ABI39_RS10870 -3.8 -11.9 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS19385 -3.7 -2.6 hypothetical protein compare
ABI39_RS04795 -3.7 -1.5 M28 family peptidase compare
ABI39_RS13185 -3.7 -1.5 manganese efflux pump compare
ABI39_RS17950 -3.6 -2.1 Crp/Fnr family transcriptional regulator compare
ABI39_RS15415 -3.6 -6.3 hypothetical protein compare
ABI39_RS14465 -3.6 -7.0 hypothetical protein compare
ABI39_RS19945 -3.5 -9.1 aspartate kinase compare
ABI39_RS15410 -3.4 -5.9 DUF4296 domain-containing protein compare
ABI39_RS20090 -3.4 -7.8 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS18745 -3.4 -3.3 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS14560 -3.4 -3.0 aspartate 1-decarboxylase compare
ABI39_RS01650 -3.3 -6.2 methylmalonyl-CoA mutase small subunit compare
ABI39_RS15475 -3.3 -9.3 glucuronate isomerase compare
ABI39_RS00205 -3.3 -3.2 phosphoglucosamine mutase compare
ABI39_RS15480 -3.3 -6.8 tagaturonate reductase compare
ABI39_RS21350 -3.2 -2.2 aspartate--ammonia ligase compare
ABI39_RS20105 -3.2 -5.5 Fe-S cluster domain-containing protein compare
ABI39_RS04930 -3.2 -4.0 helix-turn-helix transcriptional regulator compare
ABI39_RS04245 -3.2 -1.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS14030 -3.1 -3.7 MFS transporter compare
ABI39_RS09245 -3.1 -11.0 cardiolipin synthase compare
ABI39_RS09850 -3.0 -4.4 energy transducer TonB compare
ABI39_RS20100 -3.0 -7.9 electron transport complex subunit RsxC compare
ABI39_RS15320 -3.0 -9.4 PorT family protein compare
ABI39_RS09515 -3.0 -3.4 nucleoside deaminase compare
ABI39_RS20080 -2.9 -5.8 electron transport complex subunit RsxA compare
ABI39_RS17745 -2.9 -1.7 sulfur carrier protein ThiS compare
ABI39_RS09575 -2.9 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS11545 -2.9 -8.8 hypothetical protein compare
ABI39_RS17140 -2.9 -1.8 AAA family ATPase compare
ABI39_RS16870 -2.8 -3.3 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS13180 -2.8 -1.9 FAD:protein FMN transferase compare
ABI39_RS20395 -2.8 -2.6 DedA family protein compare
ABI39_RS19920 -2.8 -3.7 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS03005 -2.8 -7.4 rhamnulose-1-phosphate aldolase compare
ABI39_RS04280 -2.7 -4.3 DUF4292 domain-containing protein compare
ABI39_RS04700 -2.7 -3.1 type I DNA topoisomerase compare
ABI39_RS10650 -2.7 -12.4 AraC family transcriptional regulator compare
ABI39_RS02500 -2.6 -7.0 pyridoxine 5'-phosphate synthase compare
ABI39_RS14245 -2.6 -13.1 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS20355 -2.6 -12.4 carboxypeptidase-like regulatory domain-containing protein compare
ABI39_RS08035 -2.5 -1.7 adenylosuccinate lyase compare
ABI39_RS03320 -2.5 -9.5 FecR domain-containing protein compare
ABI39_RS11485 -2.5 -3.7 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS16895 -2.4 -3.2 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS16620 -2.4 -1.0 phage integrase SAM-like domain-containing protein compare
ABI39_RS08850 -2.4 -2.8 toprim domain-containing protein compare
ABI39_RS09855 -2.4 -1.6 polyprenyl synthetase family protein compare
ABI39_RS20930 -2.4 -13.7 tetratricopeptide repeat protein compare
ABI39_RS19985 -2.3 -1.4 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS07090 -2.3 -1.3 hypothetical protein compare
ABI39_RS08135 -2.3 -2.1 YicC family protein compare
ABI39_RS06250 -2.3 -8.3 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS02140 -2.3 -1.4 TetR/AcrR family transcriptional regulator compare
ABI39_RS15610 -2.2 -1.1 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS17170 -2.2 -1.5 protein BatD compare
ABI39_RS04460 -2.2 -6.7 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS01300 -2.2 -6.9 NADP-specific glutamate dehydrogenase compare
ABI39_RS06220 -2.2 -9.7 glycosyltransferase family 2 protein compare
ABI39_RS06235 -2.2 -6.1 UDP-galactopyranose mutase compare
ABI39_RS14265 -2.2 -6.0 ATP-dependent dethiobiotin synthetase BioD compare
ABI39_RS00515 -2.2 -2.2 hypothetical protein compare
ABI39_RS09195 -2.1 -2.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS11660 -2.1 -6.3 galactose mutarotase compare
ABI39_RS16320 -2.1 -1.2 DUF3989 domain-containing protein compare
ABI39_RS14715 -2.1 -3.4 RidA family protein compare
ABI39_RS04425 -2.1 -6.1 hypothetical protein compare
ABI39_RS06620 -2.1 -1.6 HU family DNA-binding protein compare
ABI39_RS17175 -2.1 -4.1 tetratricopeptide repeat protein compare
ABI39_RS02755 -2.1 -2.0 glycosyltransferase compare
ABI39_RS04145 -2.0 -1.4 transcription elongation factor GreA compare
ABI39_RS17755 -2.0 -2.9 thiazole synthase compare
ABI39_RS16875 -2.0 -3.0 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS09040 -2.0 -9.9 MFS transporter compare
ABI39_RS04970 -2.0 -3.9 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS17335 -1.9 -8.0 phosphatidylinositol-4-phosphate 5-kinase compare
ABI39_RS04885 -1.9 -2.6 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS18740 -1.9 -5.2 ATP-binding protein compare
ABI39_RS14250 -1.9 -6.4 8-amino-7-oxononanoate synthase compare
ABI39_RS17150 -1.9 -3.5 hypothetical protein compare
ABI39_RS14235 -1.9 -2.2 hypothetical protein compare
ABI39_RS21190 -1.9 -2.1 dihydrodipicolinate synthase family protein compare
ABI39_RS05280 -1.9 -8.2 S41 family peptidase compare
ABI39_RS14255 -1.9 -2.6 DUF452 family protein compare
ABI39_RS04455 -1.9 -7.6 TonB-dependent receptor compare
ABI39_RS20110 -1.8 -2.0 SoxR reducing system RseC family protein compare
ABI39_RS12755 -1.8 -2.1 SurA N-terminal domain-containing protein compare
ABI39_RS17180 -1.8 -4.2 phosphatase PAP2 family protein compare
ABI39_RS15400 -1.8 -6.3 TraR/DksA C4-type zinc finger protein compare
ABI39_RS01735 -1.8 -6.4 acyl-CoA dehydrogenase family protein compare
ABI39_RS16695 -1.8 -6.1 carbon-nitrogen hydrolase compare
ABI39_RS14240 -1.8 -3.7 biotin synthase BioB compare
ABI39_RS15665 -1.8 -3.2 pyridoxal phosphate-dependent class II aminotransferase compare
ABI39_RS05175 -1.8 -2.4 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS15615 -1.8 -2.8 cysteine-rich CWC family protein compare
ABI39_RS17160 -1.7 -1.6 VWA domain-containing protein compare
ABI39_RS18385 -1.7 -1.1 helix-turn-helix domain-containing protein compare
ABI39_RS17750 -1.7 -3.8 thiamine phosphate synthase compare
ABI39_RS02350 -1.7 -4.4 ABC transporter permease compare
ABI39_RS12955 -1.7 -4.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS17320 -1.7 -1.9 YhcH/YjgK/YiaL family protein compare
ABI39_RS01730 -1.7 -4.3 electron transfer flavoprotein subunit alpha/FixB family protein compare
ABI39_RS12780 -1.7 -2.8 type III pantothenate kinase compare
ABI39_RS14260 -1.6 -6.8 malonyl-ACP O-methyltransferase BioC compare
ABI39_RS16880 -1.6 -2.6 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS17310 -1.6 -7.6 hypothetical protein compare
ABI39_RS16445 -1.5 -2.1 alpha-ribazole phosphatase compare
ABI39_RS15670 -1.5 -6.6 cobalamin biosynthesis protein CobD compare
ABI39_RS16885 -1.5 -1.7 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS00520 -1.5 -6.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABI39_RS02480 -1.5 -2.2 DJ-1/PfpI family protein compare
ABI39_RS12670 -1.5 -3.0 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
ABI39_RS10160 -1.5 -5.1 FecR domain-containing protein compare
ABI39_RS06115 -1.5 -6.4 phosphatase PAP2 family protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Galactan from Potato; autoclaved in Phocaeicola dorei CL03T12C01

For carbon source Galactan from Potato; autoclaved across organisms