Experiment set3S323 for Escherichia coli ECOR27

Compare to:

RB51

200 most important genes:

  gene name fitness t score description  
NOLOHH_06715 wecA -7.9 -16.9 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
NOLOHH_07565 rfaL -7.3 -7.1 O-antigen ligase RfaL compare
NOLOHH_07560 rfaB -7.2 -5.0 UDP-glucose--(glucosyl)LPS alpha-1,2-glucosyltransferase compare
NOLOHH_15730 -6.4 -10.7 N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase compare
NOLOHH_06675 wzxE -4.8 -4.7 lipid III flippase WzxE compare
NOLOHH_23510 fur -3.9 -3.8 ferric iron uptake transcriptional regulator compare
NOLOHH_00445 -3.8 -6.0 peptidyl-arginine deiminase compare
NOLOHH_11495 xerD -3.6 -2.5 site-specific tyrosine recombinase XerD compare
NOLOHH_13300 iscA -3.6 -3.5 iron-sulfur cluster assembly protein IscA compare
NOLOHH_02390 gmhB -3.4 -2.3 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
NOLOHH_16620 yecT -3.0 -2.4 Uncharacterized protein YecT compare
NOLOHH_17630 btuD -2.9 -1.9 vitamin B12 ABC transporter ATP-binding protein BtuD compare
NOLOHH_20735 fadR -2.8 -2.6 fatty acid metabolism transcriptional regulator FadR compare
NOLOHH_12545 recA -2.8 -3.8 recombinase RecA compare
NOLOHH_03170 surA -2.8 -5.8 peptidylprolyl isomerase SurA compare
NOLOHH_06920 mnmG -2.7 -6.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
NOLOHH_18120 uidR -2.6 -2.4 DNA-binding transcriptional regulator UidR compare
NOLOHH_12800 ratA -2.6 -2.5 type II toxin-antitoxin system toxin RatA compare
NOLOHH_03330 -2.6 -1.4 T3SS effector EspX compare
NOLOHH_13310 hscA -2.5 -3.7 Fe-S protein assembly chaperone HscA compare
NOLOHH_18060 rsxD -2.4 -5.0 electron transport complex subunit RsxD compare
NOLOHH_13055 rseA -2.3 -2.8 anti-sigma-E factor RseA compare
NOLOHH_09835 obgE -2.3 -1.8 GTPase ObgE compare
NOLOHH_14340 ubiX -2.2 -3.3 flavin prenyltransferase UbiX compare
NOLOHH_23310 odhB -2.1 -2.4 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
NOLOHH_21380 cgsE -2.1 -1.4 curli production assembly/transport protein CsgE compare
NOLOHH_13070 rseC -2.1 -4.5 SoxR-reducing system protein RseC compare
NOLOHH_06665 wzyE -2.1 -3.8 ECA oligosaccharide polymerase compare
NOLOHH_06550 xerC -2.0 -2.5 tyrosine recombinase XerC compare
NOLOHH_19875 dbpA -2.0 -2.0 ATP-dependent RNA helicase DbpA compare
NOLOHH_20915 phoP -2.0 -2.6 two-component system response regulator PhoP compare
NOLOHH_22445 gsiD -2.0 -2.9 glutathione ABC transporter permease GsiD compare
NOLOHH_24115 -1.9 -1.3 hypothetical protein compare
NOLOHH_02845 aceE -1.8 -2.8 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
NOLOHH_07575 rfaF -1.8 -2.7 ADP-heptose--LPS heptosyltransferase RfaF compare
NOLOHH_17545 yniA -1.8 -2.2 putative ketoamine kinase YniA compare
NOLOHH_09730 ptsN -1.8 -2.7 PTS IIA-like nitrogen regulatory protein PtsN compare
NOLOHH_03190 apaH -1.8 -7.0 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
NOLOHH_17725 uhpC -1.8 -1.2 MFS transporter compare
NOLOHH_17330 ydjA -1.8 -1.2 NAD(P)H nitroreductase compare
NOLOHH_19385 ydcF -1.7 -1.9 Protein YdcF compare
NOLOHH_14305 truA -1.7 -4.5 tRNA pseudouridine(38-40) synthase TruA compare
NOLOHH_04525 miaA -1.7 -2.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
NOLOHH_11365 rpiA -1.7 -3.0 ribose-5-phosphate isomerase RpiA compare
NOLOHH_19260 hicB -1.7 -1.5 type II toxin-antitoxin system antitoxin HicB compare
NOLOHH_04655 epmB -1.7 -1.9 EF-P beta-lysylation protein EpmB compare
NOLOHH_18955 ddpX -1.7 -2.4 D-alanyl-D-alanine dipeptidase compare
NOLOHH_20440 ychT -1.6 -1.7 Protein YchT compare
NOLOHH_09695 arcB -1.6 -5.0 aerobic respiration two-component sensor histidine kinase ArcB compare
NOLOHH_01270 clpP -1.6 -3.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
NOLOHH_07540 rfaP -1.6 -4.5 lipopolysaccharide core heptose(I) kinase RfaP compare
NOLOHH_18245 mlc -1.6 -2.5 DNA-binding transcriptional repressor Mlc compare
NOLOHH_16855 kdgA -1.5 -2.2 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
NOLOHH_20845 pdeG -1.5 -1.1 putative cyclic di-GMP phosphodiesterase PdeG compare
NOLOHH_11770 yqeL -1.5 -1.9 Uncharacterized protein YqeL compare
NOLOHH_09955 deaD -1.5 -3.9 ATP-dependent RNA helicase DeaD compare
NOLOHH_14495 nuoI -1.5 -2.7 NADH-quinone oxidoreductase subunit NuoI compare
NOLOHH_20815 -1.5 -1.9 autotransporter outer membrane beta-barrel domain-containing protein compare
NOLOHH_21315 yceK -1.4 -2.4 YceK/YidQ family lipoprotein compare
NOLOHH_06300 dsbA -1.4 -2.8 thiol:disulfide interchange protein DsbA compare
NOLOHH_11480 sdhE -1.4 -1.1 FAD assembly factor SdhE compare
NOLOHH_11230 tkt -1.4 -1.9 transketolase compare
NOLOHH_16880 -1.4 -1.5 hypothetical protein compare
NOLOHH_05490 hupA -1.4 -1.8 DNA-binding protein HU-alpha compare
NOLOHH_13865 crr -1.4 -1.4 PTS glucose transporter subunit IIA compare
NOLOHH_08775 -1.4 -4.0 NfuA family Fe-S biogenesis protein compare
NOLOHH_05935 yiiR -1.4 -1.6 Uncharacterized protein YiiR compare
NOLOHH_14760 rcsB -1.4 -2.4 transcriptional regulator RcsB compare
NOLOHH_07125 -1.4 -3.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
NOLOHH_22795 -1.3 -1.0 toxin-antitoxin system HicB family antitoxin compare
NOLOHH_20185 rnb -1.3 -2.8 exoribonuclease II compare
NOLOHH_14780 apbE -1.3 -1.8 FAD:protein FMN transferase ApbE compare
NOLOHH_17690 ydiQ -1.3 -1.9 electron transfer flavoprotein compare
NOLOHH_19240 potB -1.3 -1.6 spermidine/putrescine ABC transporter permease compare
NOLOHH_08900 aroK -1.3 -1.3 shikimate kinase AroK compare
NOLOHH_20905 hflD -1.3 -2.0 high frequency lysogenization protein HflD compare
NOLOHH_05830 metJ -1.3 -1.2 met regulon transcriptional regulator MetJ compare
NOLOHH_12805 rnfH -1.3 -1.7 RnfH family protein compare
NOLOHH_20460 galU -1.3 -2.2 UTP--glucose-1-phosphate uridylyltransferase GalU compare
NOLOHH_14410 pta -1.3 -1.3 phosphate acetyltransferase compare
NOLOHH_13075 lepA -1.2 -3.4 translation elongation factor 4 compare
NOLOHH_19750 -1.2 -1.8 antiterminator compare
NOLOHH_14515 nuoM -1.2 -3.4 NADH-quinone oxidoreductase subunit M compare
NOLOHH_14470 nuoC -1.2 -4.3 NADH-quinone oxidoreductase subunit C/D compare
NOLOHH_18220 ydgD -1.2 -1.4 Uncharacterized serine protease YdgD compare
NOLOHH_19580 sitD -1.2 -1.0 iron/manganese ABC transporter permease subunit SitD compare
NOLOHH_23145 galE -1.2 -3.0 UDP-glucose 4-epimerase GalE compare
NOLOHH_24515 -1.2 -1.2 prepilin peptidase compare
NOLOHH_18915 yddB -1.1 -1.6 Uncharacterized protein YddB compare
NOLOHH_02580 glnD -1.1 -1.1 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
NOLOHH_14460 nuoA -1.1 -2.6 NADH-quinone oxidoreductase subunit NuoA compare
NOLOHH_06110 -1.1 -1.9 hypothetical protein compare
NOLOHH_18065 rsxC -1.1 -4.4 electron transport complex subunit RsxC compare
NOLOHH_21200 flgC -1.1 -1.6 flagellar basal body rod protein FlgC compare
NOLOHH_19000 -1.1 -2.4 succinyl-CoA--3-ketoacid-CoA transferase compare
NOLOHH_14200 sixA -1.1 -1.6 phosphohistidine phosphatase SixA compare
NOLOHH_23990 ybdZ -1.1 -1.9 enterobactin biosynthesis protein YbdZ compare
NOLOHH_23315 sucA -1.1 -1.3 2-oxoglutarate dehydrogenase E1 component compare
NOLOHH_20200 yciT -1.0 -0.8 DNA-binding transcriptional regulator YciT compare
NOLOHH_16015 pduF -1.0 -1.2 propanediol diffusion facilitator PduF compare
NOLOHH_23485 seqA -1.0 -1.5 replication initiation negative regulator SeqA compare
NOLOHH_21130 yceD -1.0 -2.4 23S rRNA accumulation protein YceD compare
NOLOHH_10655 qseC -1.0 -5.2 two-component system sensor histidine kinase QseC compare
NOLOHH_20250 ymiC -1.0 -1.1 Protein YmiC compare
NOLOHH_14505 nuoK -1.0 -1.4 NADH-quinone oxidoreductase subunit NuoK compare
NOLOHH_22440 pdeI -1.0 -1.8 putative cyclic di-GMP phosphodiesterase PdeI compare
NOLOHH_23030 -1.0 -1.2 siphovirus Gp157 family protein compare
NOLOHH_21400 ycdY -1.0 -2.3 molecular chaperone YcdY compare
NOLOHH_19705 -1.0 -2.1 ParB-like nuclease compare
NOLOHH_06915 mioC -1.0 -4.9 FMN-binding protein MioC compare
NOLOHH_11425 ubiI -1.0 -1.5 FAD-dependent 2-octaprenylphenol hydroxylase compare
NOLOHH_10640 ygiN -1.0 -0.9 putative quinol monooxygenase YgiN compare
NOLOHH_24470 -1.0 -1.2 prepilin-type cleavage/methylation domain-containing protein compare
NOLOHH_11740 pbl -1.0 -2.3 Putative peptidoglycan-binding-like protein compare
NOLOHH_15000 yeiW -1.0 -1.2 UPF0153 protein YeiW compare
NOLOHH_18080 ydgK -1.0 -0.9 Inner membrane protein YdgK compare
NOLOHH_17010 yobH -0.9 -1.8 Uncharacterized protein YobH compare
NOLOHH_00790 fimA -0.9 -1.1 type 1 fimbrial major subunit FimA compare
NOLOHH_18050 rsxE -0.9 -1.9 electron transport complex subunit RsxE compare
NOLOHH_12880 yfiR -0.9 -3.5 Protein YfiR compare
NOLOHH_11490 fldB -0.9 -4.5 flavodoxin FldB compare
NOLOHH_18115 hdhA -0.9 -1.4 7-alpha-hydroxysteroid dehydrogenase compare
NOLOHH_03600 prfC -0.9 -5.9 peptide chain release factor 3 compare
NOLOHH_14485 nuoG -0.9 -3.2 NADH-quinone oxidoreductase subunit NuoG compare
NOLOHH_03940 fimB -0.9 -3.6 type 1 fimbria switch DNA invertase FimB compare
NOLOHH_05225 dgkA -0.9 -2.4 diacylglycerol kinase compare
NOLOHH_13240 hcaC -0.9 -2.0 bifunctional 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit compare
NOLOHH_08375 pitA -0.9 -2.9 inorganic phosphate transporter PitA compare
NOLOHH_20110 puuB -0.9 -1.1 gamma-glutamylputrescine oxidase compare
NOLOHH_23335 sdhC -0.9 -2.6 succinate dehydrogenase cytochrome b556 subunit compare
NOLOHH_06385 fre -0.9 -5.1 NAD(P)H-flavin reductase compare
NOLOHH_03300 fkpB -0.9 -1.0 FKBP-type peptidyl-prolyl cis-trans isomerase compare
NOLOHH_14300 usg -0.9 -3.2 aspartate-semialdehyde dehydrogenase compare
NOLOHH_07010 pstS -0.9 -4.6 phosphate ABC transporter substrate-binding protein PstS compare
NOLOHH_21770 yccF -0.9 -1.9 YccF domain-containing protein compare
NOLOHH_06250 hemN -0.9 -4.4 oxygen-independent coproporphyrinogen III oxidase compare
NOLOHH_19785 -0.9 -1.4 DUF977 domain-containing protein compare
NOLOHH_16425 yecC -0.9 -1.5 L-cystine ABC transporter ATP-binding protein YecC compare
NOLOHH_14510 nuoL -0.9 -3.1 NADH-quinone oxidoreductase subunit L compare
NOLOHH_19630 -0.9 -2.0 phage tail tape measure protein compare
NOLOHH_20895 nudJ -0.9 -0.9 phosphatase NudJ compare
NOLOHH_04490 nsrR -0.8 -4.2 nitric oxide-sensing transcriptional repressor NsrR compare
NOLOHH_14450 lrhA -0.8 -5.3 transcriptional regulator LrhA compare
NOLOHH_11415 pepP -0.8 -2.5 Xaa-Pro aminopeptidase compare
NOLOHH_21940 aspC -0.8 -1.3 aspartate transaminase compare
NOLOHH_24185 tfa -0.8 -1.9 Tail fiber assembly protein compare
NOLOHH_07020 pstA -0.8 -2.0 phosphate ABC transporter permease PstA compare
NOLOHH_14935 rsuA -0.8 -1.7 16S rRNA pseudouridine(516) synthase RsuA compare
NOLOHH_20025 ycjV -0.8 -1.8 Uncharacterized ABC transporter ATP-binding protein YcjV compare
NOLOHH_05335 pgi -0.8 -4.9 glucose-6-phosphate isomerase compare
NOLOHH_08905 aroB -0.8 -2.6 3-dehydroquinate synthase compare
NOLOHH_16640 cutC -0.8 -1.5 copper homeostasis protein CutC compare
NOLOHH_01255 lon_P403L -0.8 -4.3 Lon protease compare
NOLOHH_22635 ybiA -0.8 -2.0 N-glycosidase YbiA compare
NOLOHH_15485 yegS -0.8 -1.6 lipid kinase YegS compare
NOLOHH_22715 moaE -0.8 -3.0 molybdopterin synthase catalytic subunit MoaE compare
NOLOHH_21815 pqiC -0.8 -1.8 membrane integrity-associated transporter subunit PqiC compare
NOLOHH_20455 hns -0.8 -1.5 DNA-binding transcriptional regulator H-NS compare
NOLOHH_05965 pfkA -0.8 -2.2 6-phosphofructokinase compare
NOLOHH_24645 -0.8 -2.3 replication protein RepA compare
NOLOHH_20120 puuR -0.8 -2.2 HTH-type transcriptional regulator PuuR compare
NOLOHH_15015 fruB -0.8 -2.8 fused PTS fructose transporter subunit IIA/HPr protein compare
NOLOHH_23480 pgm -0.8 -1.6 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
NOLOHH_14455 -0.8 -0.9 hypothetical protein compare
NOLOHH_02485 rnhB -0.8 -1.6 ribonuclease HII compare
NOLOHH_14120 emrK -0.8 -1.8 multidrug efflux MFS transporter periplasmic adaptor subunit EmrK compare
NOLOHH_14480 nuoF -0.8 -3.4 NADH-quinone oxidoreductase subunit NuoF compare
NOLOHH_19095 narW -0.8 -0.8 nitrate reductase molybdenum cofactor assembly chaperone compare
NOLOHH_11775 yqeJ -0.8 -0.7 Uncharacterized protein YqeJ compare
NOLOHH_04065 holC -0.8 -3.5 DNA polymerase III subunit chi compare
NOLOHH_23330 sdhD -0.8 -3.1 succinate dehydrogenase membrane anchor subunit compare
NOLOHH_20030 pgmB -0.8 -1.2 beta-phosphoglucomutase compare
NOLOHH_23250 tolR -0.7 -1.8 colicin uptake protein TolR compare
NOLOHH_09355 aroE -0.7 -2.7 shikimate dehydrogenase compare
NOLOHH_07530 rfaQ -0.7 -4.7 lipopolysaccharide core heptosyltransferase RfaQ compare
NOLOHH_08720 glpD -0.7 -3.2 glycerol-3-phosphate dehydrogenase compare
NOLOHH_10120 agaR -0.7 -3.6 aga operon transcriptional regulator AgaR compare
NOLOHH_18620 ydfJ -0.7 -0.9 Putative transporter YdfJ compare
NOLOHH_16435 yecF -0.7 -1.5 DUF2594 domain-containing protein compare
NOLOHH_20295 rluB -0.7 -2.4 23S rRNA pseudouridine(2605) synthase RluB compare
NOLOHH_17015 yebO -0.7 -1.4 Uncharacterized protein YebO compare
NOLOHH_11120 yggT -0.7 -0.8 osmotic shock tolerance protein YggT compare
NOLOHH_15220 yohO -0.7 -1.1 protein YohO compare
NOLOHH_01785 yahO -0.7 -2.6 DUF1471 domain-containing protein compare
NOLOHH_17515 cedA -0.7 -0.6 cell division activator CedA compare
NOLOHH_16845 zwf -0.7 -0.8 glucose-6-phosphate dehydrogenase compare
NOLOHH_06115 -0.7 -1.4 transcriptional regulator compare
NOLOHH_21035 nagZ -0.7 -2.0 beta-N-acetylhexosaminidase compare
NOLOHH_19040 adhP -0.7 -1.1 alcohol dehydrogenase AdhP compare
NOLOHH_14885 dsbE -0.7 -1.8 thiol:disulfide interchange protein DsbE compare
NOLOHH_17620 btuC -0.7 -1.6 vitamin B12 ABC transporter permease BtuC compare
NOLOHH_03445 -0.7 -1.3 thr operon leader peptide compare
NOLOHH_13035 srmB -0.7 -3.8 ATP-dependent RNA helicase SrmB compare
NOLOHH_07555 rfaJ -0.7 -1.7 glucosyltransferase compare
NOLOHH_14465 nuoB -0.7 -2.9 NADH-quinone oxidoreductase subunit NuoB compare
NOLOHH_18935 digH -0.7 -0.8 Glycosyl hydrolase DigH compare
NOLOHH_13390 bamB -0.7 -2.3 outer membrane protein assembly factor BamB compare
NOLOHH_05075 ytcB -0.7 -1.9 Protein YtcB compare
NOLOHH_15160 yohP -0.7 -0.7 protein YohP compare
NOLOHH_06590 cyaA -0.7 -3.8 class I adenylate cyclase compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECOR27 in phage experiments

For phage Phage across organisms