Experiment set3S320 for Phocaeicola dorei CL03T12C01

Compare to:

B-glucan from yeast; autoclaved 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS00240 -7.3 -3.9 NigD-like N-terminal domain-containing protein compare
ABI39_RS04695 -6.7 -5.7 shikimate kinase compare
ABI39_RS21045 -6.2 -4.3 tryptophan synthase subunit beta compare
ABI39_RS19930 -6.0 -5.5 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS12420 -5.8 -4.0 OadG family protein compare
ABI39_RS10640 -5.8 -11.6 serine dehydratase subunit alpha family protein compare
ABI39_RS09515 -5.7 -3.7 nucleoside deaminase compare
ABI39_RS11840 -5.6 -3.9 histidinol-phosphate transaminase compare
ABI39_RS02970 -5.4 -8.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS21075 -5.4 -6.8 tryptophan synthase subunit alpha compare
ABI39_RS04425 -5.4 -10.3 hypothetical protein compare
ABI39_RS22955 -5.2 -2.4 hypothetical protein compare
ABI39_RS12645 -5.2 -12.9 chorismate synthase compare
ABI39_RS02290 -5.1 -3.0 hypothetical protein compare
ABI39_RS10430 -5.0 -12.9 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS02870 -5.0 -5.8 acetylornithine carbamoyltransferase compare
ABI39_RS10435 -4.9 -8.1 cofactor-independent phosphoglycerate mutase compare
ABI39_RS04460 -4.9 -10.8 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS16910 -4.9 -10.6 3-phosphoglycerate dehydrogenase compare
ABI39_RS07005 -4.8 -7.1 type II 3-dehydroquinate dehydratase compare
ABI39_RS04455 -4.7 -15.9 TonB-dependent receptor compare
ABI39_RS21065 -4.6 -7.1 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS02975 -4.6 -7.4 argininosuccinate synthase compare
ABI39_RS04465 -4.5 -8.8 SusF/SusE family outer membrane protein compare
ABI39_RS00205 -4.5 -3.1 phosphoglucosamine mutase compare
ABI39_RS10495 -4.5 -5.7 prephenate dehydrogenase compare
ABI39_RS09685 -4.5 -2.4 hypothetical protein compare
ABI39_RS21060 -4.5 -6.9 anthranilate phosphoribosyltransferase compare
ABI39_RS10440 -4.4 -7.0 threonine synthase compare
ABI39_RS06010 -4.4 -6.9 polysaccharide deacetylase family protein compare
ABI39_RS19385 -4.4 -3.6 hypothetical protein compare
ABI39_RS07095 -4.3 -13.0 argininosuccinate lyase compare
ABI39_RS16905 -4.3 -10.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS01655 -4.3 -10.6 methylmalonyl-CoA mutase compare
ABI39_RS12425 -4.2 -9.8 acyl-CoA carboxylase subunit beta compare
ABI39_RS02980 -4.2 -5.6 N-acetyltransferase compare
ABI39_RS19925 -4.2 -5.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS13845 -4.1 -1.1 histone H1 compare
ABI39_RS08195 -4.1 -4.8 hypothetical protein compare
ABI39_RS10510 -4.1 -9.1 prephenate dehydratase compare
ABI39_RS10500 -4.1 -5.7 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS12415 -4.1 -3.8 biotin/lipoyl-binding protein compare
ABI39_RS10505 -4.0 -7.5 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS20355 -4.0 -12.3 carboxypeptidase-like regulatory domain-containing protein compare
ABI39_RS02960 -4.0 -10.8 pyrroline-5-carboxylate reductase compare
ABI39_RS14030 -3.9 -4.8 MFS transporter compare
ABI39_RS04685 -3.9 -5.1 acetylglutamate kinase compare
ABI39_RS12715 -3.9 -9.5 dihydroxy-acid dehydratase compare
ABI39_RS04795 -3.9 -1.8 M28 family peptidase compare
ABI39_RS21050 -3.9 -6.5 anthranilate synthase component I family protein compare
ABI39_RS05660 -3.8 -7.5 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS07790 -3.8 -6.3 M20 family metallo-hydrolase compare
ABI39_RS02875 -3.8 -7.9 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS04475 -3.8 -12.8 alpha-amylase compare
ABI39_RS11545 -3.7 -9.5 hypothetical protein compare
ABI39_RS19935 -3.7 -6.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS12720 -3.7 -12.0 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS12665 -3.6 -8.7 shikimate dehydrogenase compare
ABI39_RS11845 -3.6 -7.3 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS18745 -3.5 -4.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS21350 -3.5 -2.4 aspartate--ammonia ligase compare
ABI39_RS10260 -3.4 -7.5 adenylosuccinate synthase compare
ABI39_RS16895 -3.4 -3.2 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS10215 -3.3 -6.9 3-isopropylmalate dehydrogenase compare
ABI39_RS14465 -3.3 -6.7 hypothetical protein compare
ABI39_RS11830 -3.3 -3.5 ATP phosphoribosyltransferase compare
ABI39_RS10200 -3.3 -11.5 3-isopropylmalate dehydratase large subunit compare
ABI39_RS12735 -3.2 -5.6 ketol-acid reductoisomerase compare
ABI39_RS11140 -3.2 -1.2 undecaprenyl-phosphate glucose phosphotransferase compare
ABI39_RS09850 -3.2 -4.8 energy transducer TonB compare
ABI39_RS02880 -3.2 -8.3 glutamate 5-kinase compare
ABI39_RS08305 -3.2 -5.4 DUF4831 family protein compare
ABI39_RS11835 -3.2 -4.8 histidinol dehydrogenase compare
ABI39_RS06380 -3.2 -7.1 GH3 auxin-responsive promoter family protein compare
ABI39_RS12770 -3.1 -3.9 hypothetical protein compare
ABI39_RS04700 -3.1 -3.7 type I DNA topoisomerase compare
ABI39_RS17640 -3.1 -5.5 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS15410 -3.1 -4.8 DUF4296 domain-containing protein compare
ABI39_RS17140 -3.1 -2.1 AAA family ATPase compare
ABI39_RS15770 -3.0 -1.8 hypothetical protein compare
ABI39_RS01415 -3.0 -3.5 branched-chain amino acid aminotransferase compare
ABI39_RS17175 -3.0 -4.9 tetratricopeptide repeat protein compare
ABI39_RS01650 -2.9 -7.1 methylmalonyl-CoA mutase small subunit compare
ABI39_RS11405 -2.9 -7.2 hypothetical protein compare
ABI39_RS18330 -2.9 -9.0 PD40 domain-containing protein compare
ABI39_RS02140 -2.9 -2.1 TetR/AcrR family transcriptional regulator compare
ABI39_RS10195 -2.9 -6.7 2-isopropylmalate synthase compare
ABI39_RS10205 -2.9 -4.5 3-isopropylmalate dehydratase small subunit compare
ABI39_RS19950 -2.9 -5.7 diaminopimelate decarboxylase compare
ABI39_RS09575 -2.8 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS06235 -2.8 -7.1 UDP-galactopyranose mutase compare
ABI39_RS09845 -2.8 -3.5 (d)CMP kinase compare
ABI39_RS20220 -2.7 -2.7 DNA-binding protein compare
ABI39_RS10110 -2.7 -11.0 S9 family peptidase compare
ABI39_RS13835 -2.7 -2.7 DUF3037 domain-containing protein compare
ABI39_RS01360 -2.7 -6.6 hypothetical protein compare
ABI39_RS17950 -2.6 -2.5 Crp/Fnr family transcriptional regulator compare
ABI39_RS17310 -2.6 -9.3 hypothetical protein compare
ABI39_RS12755 -2.6 -1.8 SurA N-terminal domain-containing protein compare
ABI39_RS02755 -2.6 -1.8 glycosyltransferase compare
ABI39_RS07090 -2.6 -2.0 hypothetical protein compare
ABI39_RS00770 -2.5 -10.5 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS08555 -2.5 -7.2 Trk system potassium transporter TrkA compare
ABI39_RS06220 -2.5 -9.7 glycosyltransferase family 2 protein compare
ABI39_RS04280 -2.5 -3.7 DUF4292 domain-containing protein compare
ABI39_RS04430 -2.5 -5.8 glycoside hydrolase family 13 protein compare
ABI39_RS15265 -2.4 -2.8 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS10650 -2.4 -11.1 AraC family transcriptional regulator compare
ABI39_RS10210 -2.4 -7.0 2-isopropylmalate synthase compare
ABI39_RS19920 -2.4 -3.3 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS20105 -2.4 -3.5 Fe-S cluster domain-containing protein compare
ABI39_RS06670 -2.4 -9.1 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS17160 -2.3 -1.6 VWA domain-containing protein compare
ABI39_RS09855 -2.3 -2.7 polyprenyl synthetase family protein compare
ABI39_RS17850 -2.3 -6.4 alpha-glucan family phosphorylase compare
ABI39_RS13185 -2.3 -1.4 manganese efflux pump compare
ABI39_RS20930 -2.3 -9.2 tetratricopeptide repeat protein compare
ABI39_RS17180 -2.3 -4.0 phosphatase PAP2 family protein compare
ABI39_RS12170 -2.3 -1.0 MarR family transcriptional regulator compare
ABI39_RS02315 -2.2 -6.6 IMP dehydrogenase compare
ABI39_RS04930 -2.2 -4.5 helix-turn-helix transcriptional regulator compare
ABI39_RS16870 -2.2 -3.2 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS02480 -2.2 -2.3 DJ-1/PfpI family protein compare
ABI39_RS16320 -2.2 -1.3 DUF3989 domain-containing protein compare
ABI39_RS20090 -2.2 -3.7 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS19985 -2.2 -1.5 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS20100 -2.2 -6.5 electron transport complex subunit RsxC compare
ABI39_RS16315 -2.2 -1.0 conjugative transposon protein TraK compare
ABI39_RS00515 -2.1 -2.6 hypothetical protein compare
ABI39_RS03320 -2.1 -5.7 FecR domain-containing protein compare
ABI39_RS06055 -2.1 -5.6 phosphoribosylamine--glycine ligase compare
ABI39_RS02285 -2.1 -2.7 DNA mismatch repair endonuclease MutL compare
ABI39_RS00095 -2.1 -6.3 elongation factor G compare
ABI39_RS20095 -2.1 -5.7 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS02350 -2.1 -2.9 ABC transporter permease compare
ABI39_RS02500 -2.1 -6.6 pyridoxine 5'-phosphate synthase compare
ABI39_RS06995 -2.1 -5.6 tetratricopeptide repeat protein compare
ABI39_RS16880 -2.1 -3.0 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS20080 -2.1 -3.5 electron transport complex subunit RsxA compare
ABI39_RS20010 -2.0 -8.4 AMP-binding protein compare
ABI39_RS11875 -2.0 -5.3 OmpH family outer membrane protein compare
ABI39_RS06675 -2.0 -5.9 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS04860 -2.0 -3.6 HigA family addiction module antidote protein compare
ABI39_RS02845 -2.0 -7.2 RluA family pseudouridine synthase compare
ABI39_RS12235 -2.0 -5.0 DUF4738 domain-containing protein compare
ABI39_RS14560 -2.0 -1.7 aspartate 1-decarboxylase compare
ABI39_RS17195 -1.9 -5.3 hypothetical protein compare
ABI39_RS20070 -1.9 -5.3 UDP-glucose 4-epimerase GalE compare
ABI39_RS04690 -1.9 -4.7 biosynthetic arginine decarboxylase compare
ABI39_RS00410 -1.9 -3.9 response regulator compare
ABI39_RS04970 -1.9 -4.5 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS09230 -1.9 -1.2 hypothetical protein compare
ABI39_RS13170 -1.9 -8.6 Crp/Fnr family transcriptional regulator compare
ABI39_RS13180 -1.9 -3.3 FAD:protein FMN transferase compare
ABI39_RS01300 -1.8 -6.6 NADP-specific glutamate dehydrogenase compare
ABI39_RS15320 -1.8 -6.0 PorT family protein compare
ABI39_RS07010 -1.8 -1.2 pyruvate kinase compare
ABI39_RS18300 -1.8 -5.9 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
ABI39_RS06250 -1.8 -7.7 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS11735 -1.8 -4.6 HlyD family efflux transporter periplasmic adaptor subunit compare
ABI39_RS06920 -1.8 -4.9 glycosyltransferase compare
ABI39_RS12430 -1.8 -0.8 methylmalonyl-CoA epimerase compare
ABI39_RS04470 -1.7 -4.4 DUF5115 domain-containing protein compare
ABI39_RS16685 -1.7 -1.5 methylated-DNA--[protein]-cysteine S-methyltransferase compare
ABI39_RS05175 -1.7 -4.1 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS08035 -1.7 -2.5 adenylosuccinate lyase compare
ABI39_RS09245 -1.7 -6.3 cardiolipin synthase compare
ABI39_RS12675 -1.7 -2.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS17755 -1.7 -2.7 thiazole synthase compare
ABI39_RS17205 -1.7 -2.7 ATP-dependent Clp protease ATP-binding subunit compare
ABI39_RS08345 -1.7 -2.3 hypothetical protein compare
ABI39_RS02355 -1.6 -3.8 ABC transporter ATP-binding protein compare
ABI39_RS04145 -1.6 -1.4 transcription elongation factor GreA compare
ABI39_RS20395 -1.6 -2.4 DedA family protein compare
ABI39_RS15855 -1.6 -2.1 helix-turn-helix transcriptional regulator compare
ABI39_RS17420 -1.6 -4.2 serine hydroxymethyltransferase compare
ABI39_RS04885 -1.6 -3.1 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS10870 -1.6 -7.3 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS19485 -1.6 -1.2 hypothetical protein compare
ABI39_RS05450 -1.6 -2.3 redox-regulated ATPase YchF compare
ABI39_RS17150 -1.5 -3.4 hypothetical protein compare
ABI39_RS04245 -1.5 -1.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS20085 -1.5 -3.8 electron transport complex subunit E compare
ABI39_RS17170 -1.5 -2.0 protein BatD compare
ABI39_RS13010 -1.5 -3.5 hypothetical protein compare
ABI39_RS06620 -1.5 -1.6 HU family DNA-binding protein compare
ABI39_RS15430 -1.5 -0.9 hypothetical protein compare
ABI39_RS23150 -1.5 -0.9 S26 family signal peptidase compare
ABI39_RS15970 -1.5 -1.4 hypothetical protein compare
ABI39_RS00210 -1.5 -2.0 DUF4827 domain-containing protein compare
ABI39_RS11710 -1.5 -1.9 RNA polymerase sigma factor compare
ABI39_RS11485 -1.5 -2.5 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS00475 -1.4 -2.6 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS15010 -1.4 -1.7 F0F1 ATP synthase subunit gamma compare
ABI39_RS16620 -1.4 -0.8 phage integrase SAM-like domain-containing protein compare
ABI39_RS17745 -1.4 -1.3 sulfur carrier protein ThiS compare
ABI39_RS15400 -1.4 -3.3 TraR/DksA C4-type zinc finger protein compare
ABI39_RS02470 -1.4 -2.5 ATP-dependent DNA helicase RecG compare
ABI39_RS14715 -1.4 -3.6 RidA family protein compare
ABI39_RS06050 -1.3 -2.8 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source B-glucan from yeast; autoclaved in Phocaeicola dorei CL03T12C01

For carbon source B-glucan from yeast; autoclaved across organisms