Experiment set3S317 for Phocaeicola dorei CL03T12C01

Compare to:

Pectin from apple; filtered 1 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS10205 -6.2 -4.6 3-isopropylmalate dehydratase small subunit compare
ABI39_RS04695 -5.7 -5.6 shikimate kinase compare
ABI39_RS11840 -5.4 -5.3 histidinol-phosphate transaminase compare
ABI39_RS20070 -5.1 -9.1 UDP-glucose 4-epimerase GalE compare
ABI39_RS10435 -5.0 -9.3 cofactor-independent phosphoglycerate mutase compare
ABI39_RS21065 -5.0 -5.7 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS12645 -4.8 -14.5 chorismate synthase compare
ABI39_RS21075 -4.7 -5.6 tryptophan synthase subunit alpha compare
ABI39_RS21045 -4.6 -6.6 tryptophan synthase subunit beta compare
ABI39_RS06010 -4.6 -8.0 polysaccharide deacetylase family protein compare
ABI39_RS02315 -4.6 -10.9 IMP dehydrogenase compare
ABI39_RS12665 -4.5 -8.4 shikimate dehydrogenase compare
ABI39_RS10505 -4.5 -10.5 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS07005 -4.5 -6.8 type II 3-dehydroquinate dehydratase compare
ABI39_RS10500 -4.4 -5.8 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS02290 -4.4 -4.7 hypothetical protein compare
ABI39_RS13845 -4.4 -1.3 histone H1 compare
ABI39_RS09845 -4.4 -3.0 (d)CMP kinase compare
ABI39_RS02870 -4.3 -7.6 acetylornithine carbamoyltransferase compare
ABI39_RS11835 -4.3 -7.2 histidinol dehydrogenase compare
ABI39_RS11830 -4.3 -5.2 ATP phosphoribosyltransferase compare
ABI39_RS02975 -4.3 -12.3 argininosuccinate synthase compare
ABI39_RS10495 -4.3 -4.3 prephenate dehydrogenase compare
ABI39_RS10640 -4.3 -10.3 serine dehydratase subunit alpha family protein compare
ABI39_RS12715 -4.2 -12.1 dihydroxy-acid dehydratase compare
ABI39_RS04795 -4.2 -2.2 M28 family peptidase compare
ABI39_RS12430 -4.2 -1.3 methylmalonyl-CoA epimerase compare
ABI39_RS10510 -4.1 -8.5 prephenate dehydratase compare
ABI39_RS19925 -4.1 -5.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS12770 -4.0 -4.6 hypothetical protein compare
ABI39_RS16910 -4.0 -8.1 3-phosphoglycerate dehydrogenase compare
ABI39_RS11845 -4.0 -8.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS18745 -4.0 -3.9 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS16905 -4.0 -11.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS05660 -4.0 -8.9 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS16870 -3.9 -2.7 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS12425 -3.9 -9.9 acyl-CoA carboxylase subunit beta compare
ABI39_RS10215 -3.8 -10.2 3-isopropylmalate dehydrogenase compare
ABI39_RS04685 -3.8 -7.6 acetylglutamate kinase compare
ABI39_RS10440 -3.8 -7.2 threonine synthase compare
ABI39_RS21060 -3.8 -4.9 anthranilate phosphoribosyltransferase compare
ABI39_RS12420 -3.7 -6.0 OadG family protein compare
ABI39_RS02980 -3.7 -6.6 N-acetyltransferase compare
ABI39_RS15375 -3.7 -11.5 sugar kinase compare
ABI39_RS21050 -3.7 -8.2 anthranilate synthase component I family protein compare
ABI39_RS12735 -3.6 -6.8 ketol-acid reductoisomerase compare
ABI39_RS10430 -3.6 -13.3 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS10260 -3.6 -8.6 adenylosuccinate synthase compare
ABI39_RS01415 -3.5 -3.4 branched-chain amino acid aminotransferase compare
ABI39_RS17140 -3.4 -2.3 AAA family ATPase compare
ABI39_RS10200 -3.4 -12.9 3-isopropylmalate dehydratase large subunit compare
ABI39_RS22955 -3.4 -3.6 hypothetical protein compare
ABI39_RS20090 -3.4 -7.6 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS17950 -3.4 -3.3 Crp/Fnr family transcriptional regulator compare
ABI39_RS20085 -3.4 -6.1 electron transport complex subunit E compare
ABI39_RS19930 -3.3 -7.8 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS02880 -3.3 -8.8 glutamate 5-kinase compare
ABI39_RS07790 -3.3 -8.4 M20 family metallo-hydrolase compare
ABI39_RS10195 -3.3 -10.7 2-isopropylmalate synthase compare
ABI39_RS10110 -3.3 -11.3 S9 family peptidase compare
ABI39_RS02960 -3.3 -9.8 pyrroline-5-carboxylate reductase compare
ABI39_RS11405 -3.3 -8.9 hypothetical protein compare
ABI39_RS20080 -3.3 -7.5 electron transport complex subunit RsxA compare
ABI39_RS12720 -3.3 -11.6 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS06380 -3.2 -6.9 GH3 auxin-responsive promoter family protein compare
ABI39_RS07095 -3.2 -15.6 argininosuccinate lyase compare
ABI39_RS02875 -3.2 -11.7 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS20095 -3.2 -11.4 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS19935 -3.2 -7.7 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS08035 -3.1 -2.1 adenylosuccinate lyase compare
ABI39_RS06995 -3.1 -10.0 tetratricopeptide repeat protein compare
ABI39_RS04145 -3.1 -2.0 transcription elongation factor GreA compare
ABI39_RS15265 -3.0 -2.9 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS01360 -3.0 -6.2 hypothetical protein compare
ABI39_RS08305 -3.0 -8.4 DUF4831 family protein compare
ABI39_RS13180 -3.0 -2.9 FAD:protein FMN transferase compare
ABI39_RS02970 -3.0 -9.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS02470 -3.0 -6.2 ATP-dependent DNA helicase RecG compare
ABI39_RS14560 -3.0 -2.9 aspartate 1-decarboxylase compare
ABI39_RS06055 -2.9 -6.8 phosphoribosylamine--glycine ligase compare
ABI39_RS12415 -2.8 -3.3 biotin/lipoyl-binding protein compare
ABI39_RS17170 -2.8 -1.9 protein BatD compare
ABI39_RS09685 -2.8 -2.6 hypothetical protein compare
ABI39_RS12675 -2.8 -6.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS14465 -2.8 -7.6 hypothetical protein compare
ABI39_RS00475 -2.7 -6.9 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS09575 -2.6 -3.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS15415 -2.6 -6.1 hypothetical protein compare
ABI39_RS15410 -2.6 -5.7 DUF4296 domain-containing protein compare
ABI39_RS09830 -2.6 -7.9 methylmalonyl Co-A mutase-associated GTPase MeaB compare
ABI39_RS16885 -2.5 -2.7 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS00405 -2.5 -16.0 phosphoribosylformylglycinamidine synthase compare
ABI39_RS20100 -2.5 -5.3 electron transport complex subunit RsxC compare
ABI39_RS16895 -2.5 -3.7 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS17175 -2.5 -5.8 tetratricopeptide repeat protein compare
ABI39_RS14030 -2.5 -4.2 MFS transporter compare
ABI39_RS07090 -2.5 -2.3 hypothetical protein compare
ABI39_RS16875 -2.4 -3.9 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS04930 -2.4 -3.4 helix-turn-helix transcriptional regulator compare
ABI39_RS10210 -2.4 -6.6 2-isopropylmalate synthase compare
ABI39_RS12725 -2.4 -4.0 acetolactate synthase small subunit compare
ABI39_RS01650 -2.4 -8.6 methylmalonyl-CoA mutase small subunit compare
ABI39_RS17195 -2.3 -7.4 hypothetical protein compare
ABI39_RS17150 -2.3 -4.5 hypothetical protein compare
ABI39_RS18330 -2.3 -8.5 PD40 domain-containing protein compare
ABI39_RS19950 -2.3 -5.3 diaminopimelate decarboxylase compare
ABI39_RS15380 -2.3 -2.3 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
ABI39_RS04280 -2.2 -5.5 DUF4292 domain-containing protein compare
ABI39_RS20105 -2.2 -3.1 Fe-S cluster domain-containing protein compare
ABI39_RS04700 -2.2 -3.2 type I DNA topoisomerase compare
ABI39_RS00770 -2.2 -11.3 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS02755 -2.2 -2.1 glycosyltransferase compare
ABI39_RS04885 -2.2 -4.1 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS13185 -2.2 -1.8 manganese efflux pump compare
ABI39_RS10870 -2.1 -7.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS16880 -2.1 -3.9 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS17420 -2.1 -5.7 serine hydroxymethyltransferase compare
ABI39_RS04245 -2.1 -2.0 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS08195 -2.1 -5.8 hypothetical protein compare
ABI39_RS15320 -2.1 -8.9 PorT family protein compare
ABI39_RS09850 -2.1 -5.2 energy transducer TonB compare
ABI39_RS20965 -2.0 -2.2 SPOR domain-containing protein compare
ABI39_RS19385 -2.0 -3.0 hypothetical protein compare
ABI39_RS01655 -2.0 -7.7 methylmalonyl-CoA mutase compare
ABI39_RS09245 -1.9 -10.5 cardiolipin synthase compare
ABI39_RS15475 -1.9 -8.9 glucuronate isomerase compare
ABI39_RS00205 -1.9 -3.6 phosphoglucosamine mutase compare
ABI39_RS06235 -1.9 -6.1 UDP-galactopyranose mutase compare
ABI39_RS20355 -1.9 -10.9 carboxypeptidase-like regulatory domain-containing protein compare
ABI39_RS17160 -1.9 -2.5 VWA domain-containing protein compare
ABI39_RS15365 -1.9 -2.3 altronate dehydratase compare
ABI39_RS13835 -1.9 -2.7 DUF3037 domain-containing protein compare
ABI39_RS11485 -1.9 -3.7 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS00515 -1.8 -2.7 hypothetical protein compare
ABI39_RS06220 -1.8 -7.7 glycosyltransferase family 2 protein compare
ABI39_RS19920 -1.8 -4.1 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS04460 -1.7 -9.8 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS15480 -1.7 -6.2 tagaturonate reductase compare
ABI39_RS08185 -1.7 -5.9 hemolysin III family protein compare
ABI39_RS06920 -1.7 -2.4 glycosyltransferase compare
ABI39_RS04425 -1.7 -7.7 hypothetical protein compare
ABI39_RS04455 -1.7 -11.2 TonB-dependent receptor compare
ABI39_RS15665 -1.7 -6.1 pyridoxal phosphate-dependent class II aminotransferase compare
ABI39_RS17335 -1.7 -8.2 phosphatidylinositol-4-phosphate 5-kinase compare
ABI39_RS19945 -1.6 -6.9 aspartate kinase compare
ABI39_RS11545 -1.6 -5.1 hypothetical protein compare
ABI39_RS14480 -1.6 -7.0 ferrous iron transport protein B compare
ABI39_RS15670 -1.6 -7.1 cobalamin biosynthesis protein CobD compare
ABI39_RS04730 -1.6 -1.7 Lrp/AsnC ligand binding domain-containing protein compare
ABI39_RS06115 -1.6 -6.0 phosphatase PAP2 family protein compare
ABI39_RS11650 -1.6 -6.3 galactokinase compare
ABI39_RS06925 -1.6 -5.9 glycosyltransferase compare
ABI39_RS15650 -1.5 -6.6 cobyrinate a,c-diamide synthase compare
ABI39_RS03005 -1.5 -6.4 rhamnulose-1-phosphate aldolase compare
ABI39_RS00410 -1.5 -2.5 response regulator compare
ABI39_RS10650 -1.5 -8.3 AraC family transcriptional regulator compare
ABI39_RS06670 -1.5 -8.8 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS12755 -1.5 -3.0 SurA N-terminal domain-containing protein compare
ABI39_RS01730 -1.5 -4.4 electron transfer flavoprotein subunit alpha/FixB family protein compare
ABI39_RS05280 -1.5 -7.4 S41 family peptidase compare
ABI39_RS04860 -1.4 -1.3 HigA family addiction module antidote protein compare
ABI39_RS16980 -1.4 -2.4 helix-turn-helix transcriptional regulator compare
ABI39_RS01300 -1.4 -7.1 NADP-specific glutamate dehydrogenase compare
ABI39_RS18740 -1.4 -5.0 ATP-binding protein compare
ABI39_RS09515 -1.4 -3.2 nucleoside deaminase compare
ABI39_RS15495 -1.4 -6.8 ABC transporter substrate-binding protein compare
ABI39_RS18300 -1.4 -4.5 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
ABI39_RS02350 -1.4 -3.4 ABC transporter permease compare
ABI39_RS01735 -1.4 -4.5 acyl-CoA dehydrogenase family protein compare
ABI39_RS20930 -1.4 -9.2 tetratricopeptide repeat protein compare
ABI39_RS13225 -1.3 -2.0 phosphopyruvate hydratase compare
ABI39_RS02965 -1.3 -7.6 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS07420 -1.3 -3.2 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS09195 -1.3 -1.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS14245 -1.3 -8.7 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS05175 -1.3 -2.4 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS04675 -1.2 -1.2 hypothetical protein compare
ABI39_RS15490 -1.2 -6.2 precorrin-2 C(20)-methyltransferase compare
ABI39_RS09040 -1.2 -7.5 MFS transporter compare
ABI39_RS16050 -1.2 -1.9 site-specific integrase compare
ABI39_RS21055 -1.2 -3.6 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS04430 -1.2 -6.3 glycoside hydrolase family 13 protein compare
ABI39_RS20410 -1.2 -2.6 GDP-mannose 4,6-dehydratase compare
ABI39_RS15660 -1.2 -5.7 cobyric acid synthase compare
ABI39_RS17180 -1.2 -4.5 phosphatase PAP2 family protein compare
ABI39_RS14265 -1.2 -5.2 ATP-dependent dethiobiotin synthetase BioD compare
ABI39_RS13465 -1.2 -1.3 DUF3575 domain-containing protein compare
ABI39_RS06440 -1.2 -0.9 hypothetical protein compare
ABI39_RS14255 -1.2 -3.4 DUF452 family protein compare
ABI39_RS10250 -1.2 -2.3 DNA alkylation repair protein compare
ABI39_RS16450 -1.2 -4.0 adenosylcobinamide-GDP ribazoletransferase compare
ABI39_RS02060 -1.2 -4.7 translocation/assembly module TamB domain-containing protein compare
ABI39_RS06675 -1.2 -4.5 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS20110 -1.1 -1.4 SoxR reducing system RseC family protein compare
ABI39_RS17310 -1.1 -6.7 hypothetical protein compare
ABI39_RS16445 -1.1 -2.3 alpha-ribazole phosphatase compare
ABI39_RS09825 -1.1 -2.1 DUF1573 domain-containing protein compare
ABI39_RS14250 -1.1 -4.0 8-amino-7-oxononanoate synthase compare
ABI39_RS21190 -1.1 -2.6 dihydrodipicolinate synthase family protein compare
ABI39_RS15525 -1.1 -4.5 precorrin-3B C(17)-methyltransferase compare


Specific Phenotypes

None in this experiment

For Phocaeicola dorei CL03T12C01 in carbon source experiments

For carbon source Pectin from apple; filtered across organisms