Experiment set3S316 for Phocaeicola dorei CL03T12C01

Compare to:

Mucin from porcine stomach type III; autoclaved 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS12770 -4.3 -3.0 hypothetical protein compare
ABI39_RS09685 -4.0 -2.7 hypothetical protein compare
ABI39_RS12425 -3.7 -8.1 acyl-CoA carboxylase subunit beta compare
ABI39_RS12430 -3.6 -1.6 methylmalonyl-CoA epimerase compare
ABI39_RS13185 -3.5 -2.4 manganese efflux pump compare
ABI39_RS17950 -3.4 -2.4 Crp/Fnr family transcriptional regulator compare
ABI39_RS04795 -3.4 -2.3 M28 family peptidase compare
ABI39_RS16875 -3.1 -3.0 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS18745 -2.8 -4.3 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS09845 -2.7 -3.2 (d)CMP kinase compare
ABI39_RS16895 -2.7 -3.1 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS12420 -2.7 -5.4 OadG family protein compare
ABI39_RS20080 -2.6 -5.3 electron transport complex subunit RsxA compare
ABI39_RS20085 -2.5 -5.6 electron transport complex subunit E compare
ABI39_RS20105 -2.5 -5.5 Fe-S cluster domain-containing protein compare
ABI39_RS04145 -2.4 -1.6 transcription elongation factor GreA compare
ABI39_RS00205 -2.4 -3.3 phosphoglucosamine mutase compare
ABI39_RS13835 -2.4 -2.6 DUF3037 domain-containing protein compare
ABI39_RS20070 -2.3 -7.3 UDP-glucose 4-epimerase GalE compare
ABI39_RS02755 -2.2 -1.5 glycosyltransferase compare
ABI39_RS00090 -2.2 -3.9 HAMP domain-containing histidine kinase compare
ABI39_RS16880 -2.1 -2.4 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS14085 -2.1 -1.6 hypothetical protein compare
ABI39_RS01415 -2.0 -3.0 branched-chain amino acid aminotransferase compare
ABI39_RS04970 -1.9 -3.4 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS22820 -1.8 -1.1 hypothetical protein compare
ABI39_RS14560 -1.8 -2.5 aspartate 1-decarboxylase compare
ABI39_RS02290 -1.8 -3.0 hypothetical protein compare
ABI39_RS02055 -1.8 -3.4 BamA/TamA family outer membrane protein compare
ABI39_RS12415 -1.8 -2.8 biotin/lipoyl-binding protein compare
ABI39_RS13180 -1.8 -2.4 FAD:protein FMN transferase compare
ABI39_RS16870 -1.8 -2.9 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS20095 -1.8 -5.7 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS01650 -1.7 -5.6 methylmalonyl-CoA mutase small subunit compare
ABI39_RS01655 -1.7 -5.7 methylmalonyl-CoA mutase compare
ABI39_RS17160 -1.6 -1.6 VWA domain-containing protein compare
ABI39_RS00410 -1.6 -3.0 response regulator compare
ABI39_RS09515 -1.6 -3.2 nucleoside deaminase compare
ABI39_RS04860 -1.6 -3.7 HigA family addiction module antidote protein compare
ABI39_RS02060 -1.6 -3.9 translocation/assembly module TamB domain-containing protein compare
ABI39_RS20100 -1.6 -3.9 electron transport complex subunit RsxC compare
ABI39_RS17140 -1.5 -1.8 AAA family ATPase compare
ABI39_RS20090 -1.5 -3.6 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS04950 -1.4 -2.0 DEAD/DEAH box helicase compare
ABI39_RS07325 -1.4 -3.5 GNAT family N-acetyltransferase compare
ABI39_RS10640 -1.4 -6.6 serine dehydratase subunit alpha family protein compare
ABI39_RS22855 -1.4 -2.1 hypothetical protein compare
ABI39_RS02125 -1.3 -1.3 hypothetical protein compare
ABI39_RS23125 -1.3 -1.4 hypothetical protein compare
ABI39_RS17320 -1.3 -1.9 YhcH/YjgK/YiaL family protein compare
ABI39_RS16885 -1.3 -1.5 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS13845 -1.3 -1.0 histone H1 compare
ABI39_RS13910 -1.3 -1.2 chaperone modulator CbpM compare
ABI39_RS23105 -1.3 -1.1 hypothetical protein compare
ABI39_RS19385 -1.3 -1.7 hypothetical protein compare
ABI39_RS06010 -1.3 -4.7 polysaccharide deacetylase family protein compare
ABI39_RS04280 -1.3 -2.3 DUF4292 domain-containing protein compare
ABI39_RS14715 -1.2 -3.2 RidA family protein compare
ABI39_RS09830 -1.1 -3.7 methylmalonyl Co-A mutase-associated GTPase MeaB compare
ABI39_RS03830 -1.1 -1.3 ribosome-associated translation inhibitor RaiA compare
ABI39_RS06380 -1.1 -3.3 GH3 auxin-responsive promoter family protein compare
ABI39_RS03170 -1.1 -1.2 plasmid mobilization relaxosome protein MobC compare
ABI39_RS20965 -1.1 -1.5 SPOR domain-containing protein compare
ABI39_RS12805 -1.1 -1.9 hypothetical protein compare
ABI39_RS11655 -1.1 -1.1 MFS transporter compare
ABI39_RS17595 -1.1 -3.8 UpxY family transcription antiterminator compare
ABI39_RS15840 -1.1 -2.6 hypothetical protein compare
ABI39_RS23150 -1.1 -0.9 S26 family signal peptidase compare
ABI39_RS12500 -1.1 -2.4 class I SAM-dependent methyltransferase compare
ABI39_RS00515 -1.1 -1.9 hypothetical protein compare
ABI39_RS20060 -1.1 -4.7 YitT family protein compare
ABI39_RS05765 -1.1 -1.3 DUF4294 domain-containing protein compare
ABI39_RS01360 -1.0 -3.2 hypothetical protein compare
ABI39_RS15950 -1.0 -1.7 hypothetical protein compare
ABI39_RS17175 -1.0 -1.9 tetratricopeptide repeat protein compare
ABI39_RS19875 -1.0 -1.0 hypothetical protein compare
ABI39_RS08035 -1.0 -1.7 adenylosuccinate lyase compare
ABI39_RS17195 -1.0 -5.1 hypothetical protein compare
ABI39_RS19615 -1.0 -1.3 hypothetical protein compare
ABI39_RS07500 -1.0 -1.1 hypothetical protein compare
ABI39_RS22870 -1.0 -1.5 aldo/keto reductase compare
ABI39_RS15855 -1.0 -2.1 helix-turn-helix transcriptional regulator compare
ABI39_RS20175 -1.0 -1.7 translation elongation factor 4 compare
ABI39_RS10450 -1.0 -2.9 ABC transporter ATP-binding protein compare
ABI39_RS06920 -1.0 -2.0 glycosyltransferase compare
ABI39_RS08305 -1.0 -3.2 DUF4831 family protein compare
ABI39_RS09850 -1.0 -2.3 energy transducer TonB compare
ABI39_RS19985 -0.9 -1.4 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS10110 -0.9 -5.1 S9 family peptidase compare
ABI39_RS20140 -0.9 -2.3 copper homeostasis protein CutC compare
ABI39_RS17170 -0.9 -1.3 protein BatD compare
ABI39_RS23235 -0.9 -1.1 hypothetical protein compare
ABI39_RS19730 -0.9 -2.1 hypothetical protein compare
ABI39_RS17180 -0.9 -3.9 phosphatase PAP2 family protein compare
ABI39_RS22625 -0.9 -1.7 hypothetical protein compare
ABI39_RS16515 -0.9 -1.6 tRNA guanosine(34) transglycosylase Tgt compare
ABI39_RS17640 -0.9 -2.6 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS22305 -0.9 -2.0 DUF3408 domain-containing protein compare
ABI39_RS02080 -0.9 -1.8 DUF1893 domain-containing protein compare
ABI39_RS19355 -0.9 -2.0 EamA family transporter compare
ABI39_RS02845 -0.9 -3.8 RluA family pseudouridine synthase compare
ABI39_RS22955 -0.9 -2.0 hypothetical protein compare
ABI39_RS06050 -0.9 -2.8 hypothetical protein compare
ABI39_RS19535 -0.9 -2.4 hypothetical protein compare
ABI39_RS19760 -0.9 -2.0 tRNA-Gln compare
ABI39_RS22350 -0.9 -1.8 glycoside hydrolase family 99-like domain-containing protein compare
ABI39_RS16360 -0.9 -2.5 hypothetical protein compare
ABI39_RS11260 -0.9 -0.9 DUF4348 domain-containing protein compare
ABI39_RS20395 -0.9 -1.5 DedA family protein compare
ABI39_RS14250 -0.9 -3.3 8-amino-7-oxononanoate synthase compare
ABI39_RS19630 -0.8 -1.3 hypothetical protein compare
ABI39_RS17150 -0.8 -1.9 hypothetical protein compare
ABI39_RS15000 -0.8 -1.2 F0F1 ATP synthase subunit delta compare
ABI39_RS18330 -0.8 -4.0 PD40 domain-containing protein compare
ABI39_RS10460 -0.8 -2.3 ABC transporter substrate-binding protein compare
ABI39_RS21885 -0.8 -1.7 tyrosine-type recombinase/integrase compare
ABI39_RS09770 -0.8 -3.4 DUF349 domain-containing protein compare
ABI39_RS17310 -0.8 -3.6 hypothetical protein compare
ABI39_RS19075 -0.8 -1.4 hypothetical protein compare
ABI39_RS15430 -0.8 -0.8 hypothetical protein compare
ABI39_RS03565 -0.8 -1.6 hypothetical protein compare
ABI39_RS19625 -0.8 -1.0 hypothetical protein compare
ABI39_RS09855 -0.8 -1.3 polyprenyl synthetase family protein compare
ABI39_RS23070 -0.8 -1.0 hypothetical protein compare
ABI39_RS14480 -0.8 -3.4 ferrous iron transport protein B compare
ABI39_RS09275 -0.8 -0.8 thymidine kinase compare
ABI39_RS10415 -0.8 -1.3 DUF1847 domain-containing protein compare
ABI39_RS14870 -0.8 -1.9 recombination protein RecR compare
ABI39_RS16620 -0.8 -0.7 phage integrase SAM-like domain-containing protein compare
ABI39_RS22190 -0.7 -2.7 hypothetical protein compare
ABI39_RS12665 -0.7 -3.2 shikimate dehydrogenase compare
ABI39_RS00760 -0.7 -1.1 YjgP/YjgQ family permease compare
ABI39_RS18490 -0.7 -1.1 helix-turn-helix domain-containing protein compare
ABI39_RS07010 -0.7 -0.8 pyruvate kinase compare
ABI39_RS16295 -0.7 -1.4 TraG family conjugative transposon ATPase compare
ABI39_RS18165 -0.7 -1.1 DUF5024 domain-containing protein compare
ABI39_RS15410 -0.7 -2.3 DUF4296 domain-containing protein compare
ABI39_RS00250 -0.7 -1.3 chloride channel protein compare
ABI39_RS04700 -0.7 -1.9 type I DNA topoisomerase compare
ABI39_RS06995 -0.7 -2.5 tetratricopeptide repeat protein compare
ABI39_RS10155 -0.7 -1.6 RNA polymerase sigma-70 factor compare
ABI39_RS17205 -0.7 -1.1 ATP-dependent Clp protease ATP-binding subunit compare
ABI39_RS22360 -0.7 -1.2 potassium-transporting ATPase subunit F compare
ABI39_RS10455 -0.7 -2.4 iron ABC transporter permease compare
ABI39_RS08195 -0.7 -1.7 hypothetical protein compare
ABI39_RS19485 -0.7 -1.0 hypothetical protein compare
ABI39_RS16040 -0.7 -0.6 hypothetical protein compare
ABI39_RS11160 -0.7 -1.2 UpxY family transcription antiterminator compare
ABI39_RS22175 -0.7 -0.7 N-acetylmuramoyl-L-alanine amidase compare
ABI39_RS13225 -0.7 -1.1 phosphopyruvate hydratase compare
ABI39_RS18135 -0.7 -3.9 hypothetical protein compare
ABI39_RS14375 -0.7 -0.9 DUF4492 domain-containing protein compare
ABI39_RS15890 -0.7 -2.3 phosphoadenosine phosphosulfate reductase family protein compare
ABI39_RS04930 -0.7 -2.5 helix-turn-helix transcriptional regulator compare
ABI39_RS02465 -0.7 -0.9 nucleoside-diphosphate kinase compare
ABI39_RS15710 -0.7 -0.9 hypothetical protein compare
ABI39_RS23100 -0.7 -1.3 hypothetical protein compare
ABI39_RS00520 -0.7 -3.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABI39_RS22135 -0.7 -0.9 type II toxin-antitoxin system RelE/ParE family toxin compare
ABI39_RS00105 -0.7 -0.5 hypothetical protein compare
ABI39_RS16430 -0.7 -1.4 site-specific integrase compare
ABI39_RS06675 -0.6 -2.5 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS19255 -0.6 -2.2 aldo/keto reductase compare
ABI39_RS12645 -0.6 -3.9 chorismate synthase compare
ABI39_RS10650 -0.6 -4.3 AraC family transcriptional regulator compare
ABI39_RS08850 -0.6 -1.2 toprim domain-containing protein compare
ABI39_RS11485 -0.6 -1.3 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS21985 -0.6 -1.5 left-handed beta-roll domain-containing protein compare
ABI39_RS20855 -0.6 -1.5 hypothetical protein compare
ABI39_RS09670 -0.6 -0.8 cardiolipin synthase compare
ABI39_RS12150 -0.6 -1.5 hotdog fold thioesterase compare
ABI39_RS05280 -0.6 -3.3 S41 family peptidase compare
ABI39_RS06070 -0.6 -0.9 hypothetical protein compare
ABI39_RS04695 -0.6 -1.9 shikimate kinase compare
ABI39_RS20380 -0.6 -1.1 PstS family phosphate ABC transporter substrate-binding protein compare
ABI39_RS14235 -0.6 -1.5 hypothetical protein compare
ABI39_RS18160 -0.6 -4.8 MFS transporter compare
ABI39_RS18025 -0.6 -0.8 LytTR family transcriptional regulator compare
ABI39_RS06670 -0.6 -2.9 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS04455 -0.6 -4.1 TonB-dependent receptor compare
ABI39_RS07210 -0.6 -1.3 hypothetical protein compare
ABI39_RS12445 -0.6 -1.7 hypothetical protein compare
ABI39_RS19995 -0.6 -0.9 DUF4494 domain-containing protein compare
ABI39_RS08175 -0.6 -1.4 anaerobic ribonucleoside-triphosphate reductase activating protein compare
ABI39_RS21940 -0.6 -1.0 helix-turn-helix domain-containing protein compare
ABI39_RS06030 -0.6 -1.6 helix-turn-helix transcriptional regulator compare
ABI39_RS09575 -0.6 -1.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS19490 -0.6 -1.6 hypothetical protein compare
ABI39_RS18740 -0.6 -1.8 ATP-binding protein compare
ABI39_RS15415 -0.6 -1.8 hypothetical protein compare
ABI39_RS11690 -0.6 -2.9 cytidine deaminase compare
ABI39_RS05980 -0.6 -0.7 gluconate 5-dehydrogenase compare
ABI39_RS02285 -0.6 -1.3 DNA mismatch repair endonuclease MutL compare
ABI39_RS14925 -0.6 -1.8 NigD-like N-terminal domain-containing protein compare
ABI39_RS14140 -0.6 -1.3 DUF1573 domain-containing protein compare
ABI39_RS06220 -0.6 -3.3 glycosyltransferase family 2 protein compare
ABI39_RS22520 -0.6 -1.1 aldo/keto reductase compare
ABI39_RS12655 -0.6 -1.8 TPM domain-containing protein compare
ABI39_RS10775 -0.6 -2.5 DUF3575 domain-containing protein compare
ABI39_RS16485 -0.6 -0.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola dorei CL03T12C01 in carbon source experiments

For carbon source Mucin from porcine stomach type III; autoclaved across organisms