Experiment set3S315 for Phocaeicola dorei CL03T12C01

Compare to:

Mucin from porcine stomach type III; autoclaved 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS12420 -4.5 -4.4 OadG family protein compare
ABI39_RS19385 -4.2 -2.9 hypothetical protein compare
ABI39_RS12170 -3.9 -1.9 MarR family transcriptional regulator compare
ABI39_RS09685 -3.7 -2.5 hypothetical protein compare
ABI39_RS20080 -3.4 -5.1 electron transport complex subunit RsxA compare
ABI39_RS02290 -3.4 -3.3 hypothetical protein compare
ABI39_RS12770 -3.3 -3.2 hypothetical protein compare
ABI39_RS12425 -3.2 -7.8 acyl-CoA carboxylase subunit beta compare
ABI39_RS19950 -3.2 -3.8 diaminopimelate decarboxylase compare
ABI39_RS07655 -3.2 -1.6 peptidase M15 compare
ABI39_RS16885 -3.1 -2.1 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS16895 -3.1 -2.1 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS04795 -3.1 -2.1 M28 family peptidase compare
ABI39_RS09230 -2.9 -2.2 hypothetical protein compare
ABI39_RS18745 -2.8 -3.3 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS09515 -2.7 -3.5 nucleoside deaminase compare
ABI39_RS22955 -2.5 -3.3 hypothetical protein compare
ABI39_RS04280 -2.5 -3.8 DUF4292 domain-containing protein compare
ABI39_RS07890 -2.5 -1.8 hypothetical protein compare
ABI39_RS20100 -2.5 -5.7 electron transport complex subunit RsxC compare
ABI39_RS20070 -2.5 -6.2 UDP-glucose 4-epimerase GalE compare
ABI39_RS17140 -2.4 -1.7 AAA family ATPase compare
ABI39_RS20085 -2.4 -4.9 electron transport complex subunit E compare
ABI39_RS17320 -2.4 -2.4 YhcH/YjgK/YiaL family protein compare
ABI39_RS04950 -2.3 -2.2 DEAD/DEAH box helicase compare
ABI39_RS01360 -2.3 -4.4 hypothetical protein compare
ABI39_RS15415 -2.3 -4.6 hypothetical protein compare
ABI39_RS20105 -2.3 -4.5 Fe-S cluster domain-containing protein compare
ABI39_RS16880 -2.2 -2.2 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS06760 -2.2 -1.6 hypothetical protein compare
ABI39_RS01650 -2.2 -6.0 methylmalonyl-CoA mutase small subunit compare
ABI39_RS09845 -2.2 -2.5 (d)CMP kinase compare
ABI39_RS00410 -2.1 -2.5 response regulator compare
ABI39_RS13180 -2.0 -2.0 FAD:protein FMN transferase compare
ABI39_RS13185 -2.0 -1.7 manganese efflux pump compare
ABI39_RS01655 -2.0 -5.5 methylmalonyl-CoA mutase compare
ABI39_RS16870 -2.0 -2.7 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS16685 -2.0 -2.1 methylated-DNA--[protein]-cysteine S-methyltransferase compare
ABI39_RS02755 -2.0 -1.3 glycosyltransferase compare
ABI39_RS20095 -2.0 -6.3 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS09830 -1.9 -4.9 methylmalonyl Co-A mutase-associated GTPase MeaB compare
ABI39_RS17170 -1.9 -1.3 protein BatD compare
ABI39_RS17150 -1.9 -2.3 hypothetical protein compare
ABI39_RS11930 -1.9 -3.0 recombinase RecA compare
ABI39_RS12415 -1.8 -2.9 biotin/lipoyl-binding protein compare
ABI39_RS06995 -1.8 -4.5 tetratricopeptide repeat protein compare
ABI39_RS09855 -1.8 -1.7 polyprenyl synthetase family protein compare
ABI39_RS06920 -1.8 -3.0 glycosyltransferase compare
ABI39_RS20975 -1.7 -2.6 phage holin family protein compare
ABI39_RS15265 -1.7 -2.0 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS20090 -1.7 -4.3 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS10640 -1.7 -6.6 serine dehydratase subunit alpha family protein compare
ABI39_RS18910 -1.7 -1.9 preprotein translocase subunit YajC compare
ABI39_RS04970 -1.7 -3.0 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS05980 -1.6 -2.2 gluconate 5-dehydrogenase compare
ABI39_RS09850 -1.6 -2.8 energy transducer TonB compare
ABI39_RS06380 -1.6 -3.9 GH3 auxin-responsive promoter family protein compare
ABI39_RS05450 -1.6 -2.8 redox-regulated ATPase YchF compare
ABI39_RS02470 -1.6 -3.1 ATP-dependent DNA helicase RecG compare
ABI39_RS02055 -1.5 -2.7 BamA/TamA family outer membrane protein compare
ABI39_RS23235 -1.5 -1.5 hypothetical protein compare
ABI39_RS21190 -1.5 -2.3 dihydrodipicolinate synthase family protein compare
ABI39_RS14560 -1.5 -1.4 aspartate 1-decarboxylase compare
ABI39_RS12430 -1.5 -1.0 methylmalonyl-CoA epimerase compare
ABI39_RS18165 -1.5 -1.8 DUF5024 domain-containing protein compare
ABI39_RS00205 -1.5 -2.6 phosphoglucosamine mutase compare
ABI39_RS17205 -1.4 -2.1 ATP-dependent Clp protease ATP-binding subunit compare
ABI39_RS04675 -1.4 -1.4 hypothetical protein compare
ABI39_RS06050 -1.4 -3.1 hypothetical protein compare
ABI39_RS13465 -1.4 -2.1 DUF3575 domain-containing protein compare
ABI39_RS17160 -1.4 -1.3 VWA domain-containing protein compare
ABI39_RS16095 -1.4 -1.6 helix-turn-helix domain-containing protein compare
ABI39_RS08135 -1.4 -1.6 YicC family protein compare
ABI39_RS18330 -1.4 -5.5 PD40 domain-containing protein compare
ABI39_RS11140 -1.3 -1.1 undecaprenyl-phosphate glucose phosphotransferase compare
ABI39_RS10110 -1.3 -6.2 S9 family peptidase compare
ABI39_RS12805 -1.3 -2.1 hypothetical protein compare
ABI39_RS22925 -1.3 -1.4 smalltalk protein compare
ABI39_RS12150 -1.3 -3.0 hotdog fold thioesterase compare
ABI39_RS14480 -1.3 -4.4 ferrous iron transport protein B compare
ABI39_RS17950 -1.3 -1.7 Crp/Fnr family transcriptional regulator compare
ABI39_RS02060 -1.2 -3.0 translocation/assembly module TamB domain-containing protein compare
ABI39_RS17195 -1.2 -5.7 hypothetical protein compare
ABI39_RS06805 -1.2 -2.7 hypothetical protein compare
ABI39_RS08305 -1.2 -3.8 DUF4831 family protein compare
ABI39_RS04885 -1.2 -1.8 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS11505 -1.2 -1.0 YccF domain-containing protein compare
ABI39_RS11655 -1.2 -0.8 MFS transporter compare
ABI39_RS13010 -1.1 -3.4 hypothetical protein compare
ABI39_RS16875 -1.1 -1.7 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS04860 -1.1 -1.2 HigA family addiction module antidote protein compare
ABI39_RS17175 -1.1 -2.6 tetratricopeptide repeat protein compare
ABI39_RS06010 -1.1 -2.7 polysaccharide deacetylase family protein compare
ABI39_RS13480 -1.1 -2.1 helix-turn-helix transcriptional regulator compare
ABI39_RS00515 -1.1 -1.8 hypothetical protein compare
ABI39_RS08035 -1.1 -1.5 adenylosuccinate lyase compare
ABI39_RS19775 -1.1 -1.2 tRNA-Met compare
ABI39_RS12665 -1.1 -3.8 shikimate dehydrogenase compare
ABI39_RS15840 -1.0 -3.1 hypothetical protein compare
ABI39_RS03510 -1.0 -2.1 ATP-binding protein compare
ABI39_RS00250 -1.0 -1.9 chloride channel protein compare
ABI39_RS19075 -1.0 -1.9 hypothetical protein compare
ABI39_RS11190 -1.0 -1.6 helix-turn-helix domain-containing protein compare
ABI39_RS22960 -1.0 -1.1 hypothetical protein compare
ABI39_RS06670 -1.0 -5.5 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS14685 -1.0 -3.0 methionine synthase compare
ABI39_RS15765 -1.0 -1.1 hypothetical protein compare
ABI39_RS15410 -1.0 -3.4 DUF4296 domain-containing protein compare
ABI39_RS20060 -1.0 -4.6 YitT family protein compare
ABI39_RS03885 -1.0 -2.1 adenosine kinase compare
ABI39_RS05765 -1.0 -1.1 DUF4294 domain-containing protein compare
ABI39_RS15735 -1.0 -0.8 hypothetical protein compare
ABI39_RS13150 -1.0 -3.7 S41 family peptidase compare
ABI39_RS15175 -1.0 -1.5 hypothetical protein compare
ABI39_RS18740 -1.0 -2.6 ATP-binding protein compare
ABI39_RS21940 -1.0 -1.9 helix-turn-helix domain-containing protein compare
ABI39_RS17180 -0.9 -2.9 phosphatase PAP2 family protein compare
ABI39_RS02285 -0.9 -1.3 DNA mismatch repair endonuclease MutL compare
ABI39_RS00520 -0.9 -2.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABI39_RS11690 -0.9 -3.7 cytidine deaminase compare
ABI39_RS14715 -0.9 -2.8 RidA family protein compare
ABI39_RS00240 -0.9 -1.8 NigD-like N-terminal domain-containing protein compare
ABI39_RS13390 -0.9 -2.0 UpxY family transcription antiterminator compare
ABI39_RS19200 -0.9 -1.6 twin-arginine translocase TatA/TatE family subunit compare
ABI39_RS15865 -0.9 -2.8 hypothetical protein compare
ABI39_RS18160 -0.9 -6.4 MFS transporter compare
ABI39_RS17310 -0.9 -4.9 hypothetical protein compare
ABI39_RS04930 -0.9 -2.3 helix-turn-helix transcriptional regulator compare
ABI39_RS11650 -0.9 -3.2 galactokinase compare
ABI39_RS06675 -0.9 -3.5 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS01805 -0.9 -2.5 WYL domain-containing protein compare
ABI39_RS12500 -0.9 -1.8 class I SAM-dependent methyltransferase compare
ABI39_RS22305 -0.8 -1.5 DUF3408 domain-containing protein compare
ABI39_RS06620 -0.8 -1.3 HU family DNA-binding protein compare
ABI39_RS12645 -0.8 -4.9 chorismate synthase compare
ABI39_RS11730 -0.8 -3.6 glucosaminidase domain-containing protein compare
ABI39_RS19490 -0.8 -1.9 hypothetical protein compare
ABI39_RS04425 -0.8 -4.5 hypothetical protein compare
ABI39_RS22975 -0.8 -1.2 hypothetical protein compare
ABI39_RS19685 -0.8 -1.5 KilA-N domain-containing protein compare
ABI39_RS02125 -0.8 -0.9 hypothetical protein compare
ABI39_RS06065 -0.8 -1.7 RNA methyltransferase compare
ABI39_RS16385 -0.8 -1.1 hypothetical protein compare
ABI39_RS02480 -0.8 -2.0 DJ-1/PfpI family protein compare
ABI39_RS17640 -0.8 -1.7 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS23105 -0.8 -0.7 hypothetical protein compare
ABI39_RS12780 -0.8 -1.5 type III pantothenate kinase compare
ABI39_RS20705 -0.8 -1.8 hypothetical protein compare
ABI39_RS15760 -0.8 -0.9 hypothetical protein compare
ABI39_RS10475 -0.8 -5.6 TonB-dependent receptor compare
ABI39_RS03170 -0.8 -1.0 plasmid mobilization relaxosome protein MobC compare
ABI39_RS13765 -0.8 -2.0 hypothetical protein compare
ABI39_RS15770 -0.7 -1.1 hypothetical protein compare
ABI39_RS21350 -0.7 -1.2 aspartate--ammonia ligase compare
ABI39_RS12235 -0.7 -2.9 DUF4738 domain-containing protein compare
ABI39_RS08850 -0.7 -0.9 toprim domain-containing protein compare
ABI39_RS20220 -0.7 -1.4 DNA-binding protein compare
ABI39_RS13380 -0.7 -2.0 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABI39_RS06450 -0.7 -1.2 hydroxymyristoyl-ACP dehydratase compare
ABI39_RS11840 -0.7 -2.1 histidinol-phosphate transaminase compare
ABI39_RS07010 -0.7 -0.7 pyruvate kinase compare
ABI39_RS23100 -0.7 -1.1 hypothetical protein compare
ABI39_RS17645 -0.7 -1.1 TIGR03905 family TSCPD domain-containing protein compare
ABI39_RS09935 -0.7 -2.5 DNA topoisomerase 3 compare
ABI39_RS20440 -0.7 -3.6 SLBB domain-containing protein compare
ABI39_RS14030 -0.7 -1.7 MFS transporter compare
ABI39_RS11160 -0.7 -1.2 UpxY family transcription antiterminator compare
ABI39_RS04455 -0.7 -5.0 TonB-dependent receptor compare
ABI39_RS08195 -0.7 -1.7 hypothetical protein compare
ABI39_RS19530 -0.7 -2.2 DUF551 domain-containing protein compare
ABI39_RS05280 -0.7 -4.3 S41 family peptidase compare
ABI39_RS12300 -0.7 -2.4 endonuclease MutS2 compare
ABI39_RS20435 -0.7 -2.4 chain-length determining protein compare
ABI39_RS13175 -0.7 -1.4 MarC family protein compare
ABI39_RS18345 -0.7 -3.8 nucleoside phosphorylase compare
ABI39_RS07070 -0.7 -2.4 peptide chain release factor N(5)-glutamine methyltransferase compare
ABI39_RS08650 -0.7 -2.7 DUF4974 domain-containing protein compare
ABI39_RS22300 -0.7 -1.4 hypothetical protein compare
ABI39_RS15895 -0.7 -1.5 ParB N-terminal domain-containing protein compare
ABI39_RS07090 -0.7 -4.1 hypothetical protein compare
ABI39_RS10465 -0.7 -3.2 putative DNA binding domain-containing protein compare
ABI39_RS11385 -0.7 -1.1 copper resistance protein NlpE N-terminal domain-containing protein compare
ABI39_RS16485 -0.7 -1.0 hypothetical protein compare
ABI39_RS07000 -0.7 -0.8 site-specific tyrosine recombinase XerD compare
ABI39_RS18630 -0.7 -1.6 IS21-like element helper ATPase IstB compare
ABI39_RS01905 -0.7 -1.6 [FeFe] hydrogenase H-cluster radical SAM maturase HydE compare
ABI39_RS15000 -0.7 -1.1 F0F1 ATP synthase subunit delta compare
ABI39_RS03565 -0.7 -1.3 hypothetical protein compare
ABI39_RS20915 -0.7 -0.9 50S ribosomal protein L35 compare
ABI39_RS04695 -0.7 -1.6 shikimate kinase compare
ABI39_RS02845 -0.7 -3.1 RluA family pseudouridine synthase compare
ABI39_RS04700 -0.7 -1.6 type I DNA topoisomerase compare
ABI39_RS07590 -0.6 -0.8 site-specific integrase compare
ABI39_RS05655 -0.6 -1.7 hypothetical protein compare
ABI39_RS11405 -0.6 -3.4 hypothetical protein compare
ABI39_RS10650 -0.6 -4.3 AraC family transcriptional regulator compare
ABI39_RS00855 -0.6 -2.1 FecR family protein compare
ABI39_RS16695 -0.6 -3.4 carbon-nitrogen hydrolase compare
ABI39_RS11530 -0.6 -1.1 hypothetical protein compare
ABI39_RS16700 -0.6 -2.0 agmatine deiminase family protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola dorei CL03T12C01 in carbon source experiments

For carbon source Mucin from porcine stomach type III; autoclaved across organisms