Experiment set3S313 for Phocaeicola dorei CL03T12C01

Compare to:

Mucin from porcine stomach,Type II; autoclaved 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS19385 -5.2 -3.6 hypothetical protein compare
ABI39_RS16875 -4.0 -2.7 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS12770 -3.8 -4.5 hypothetical protein compare
ABI39_RS00205 -3.6 -3.5 phosphoglucosamine mutase compare
ABI39_RS18745 -3.6 -4.9 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS09685 -3.4 -3.3 hypothetical protein compare
ABI39_RS13185 -3.0 -2.5 manganese efflux pump compare
ABI39_RS13180 -2.9 -2.8 FAD:protein FMN transferase compare
ABI39_RS20080 -2.8 -5.3 electron transport complex subunit RsxA compare
ABI39_RS02755 -2.7 -1.8 glycosyltransferase compare
ABI39_RS16885 -2.7 -3.0 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS12425 -2.7 -7.3 acyl-CoA carboxylase subunit beta compare
ABI39_RS12420 -2.7 -6.5 OadG family protein compare
ABI39_RS04795 -2.6 -2.2 M28 family peptidase compare
ABI39_RS02125 -2.6 -2.0 hypothetical protein compare
ABI39_RS01650 -2.5 -7.8 methylmalonyl-CoA mutase small subunit compare
ABI39_RS17140 -2.5 -2.8 AAA family ATPase compare
ABI39_RS19985 -2.4 -2.4 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS04860 -2.4 -1.5 HigA family addiction module antidote protein compare
ABI39_RS04950 -2.3 -3.1 DEAD/DEAH box helicase compare
ABI39_RS09845 -2.3 -3.4 (d)CMP kinase compare
ABI39_RS01655 -2.3 -11.3 methylmalonyl-CoA mutase compare
ABI39_RS16235 -2.3 -4.1 hypothetical protein compare
ABI39_RS20070 -2.3 -8.4 UDP-glucose 4-epimerase GalE compare
ABI39_RS09275 -2.3 -1.8 thymidine kinase compare
ABI39_RS20085 -2.2 -7.1 electron transport complex subunit E compare
ABI39_RS02290 -2.2 -3.5 hypothetical protein compare
ABI39_RS04280 -2.2 -5.2 DUF4292 domain-containing protein compare
ABI39_RS20100 -2.1 -6.9 electron transport complex subunit RsxC compare
ABI39_RS19950 -2.1 -5.3 diaminopimelate decarboxylase compare
ABI39_RS20095 -2.1 -6.7 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS00410 -2.1 -4.4 response regulator compare
ABI39_RS17150 -2.0 -3.9 hypothetical protein compare
ABI39_RS16895 -2.0 -3.2 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS22955 -1.9 -3.8 hypothetical protein compare
ABI39_RS06380 -1.8 -7.2 GH3 auxin-responsive promoter family protein compare
ABI39_RS12415 -1.7 -2.9 biotin/lipoyl-binding protein compare
ABI39_RS09850 -1.7 -4.0 energy transducer TonB compare
ABI39_RS20105 -1.7 -6.0 Fe-S cluster domain-containing protein compare
ABI39_RS09830 -1.7 -7.9 methylmalonyl Co-A mutase-associated GTPase MeaB compare
ABI39_RS15265 -1.7 -2.8 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS17640 -1.6 -4.7 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS17950 -1.6 -2.7 Crp/Fnr family transcriptional regulator compare
ABI39_RS04730 -1.5 -1.3 Lrp/AsnC ligand binding domain-containing protein compare
ABI39_RS08035 -1.5 -3.0 adenylosuccinate lyase compare
ABI39_RS04145 -1.5 -1.5 transcription elongation factor GreA compare
ABI39_RS23105 -1.5 -1.4 hypothetical protein compare
ABI39_RS16870 -1.5 -2.9 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS12430 -1.5 -1.1 methylmalonyl-CoA epimerase compare
ABI39_RS14560 -1.5 -3.2 aspartate 1-decarboxylase compare
ABI39_RS20395 -1.5 -2.8 DedA family protein compare
ABI39_RS05450 -1.5 -3.2 redox-regulated ATPase YchF compare
ABI39_RS09515 -1.4 -3.2 nucleoside deaminase compare
ABI39_RS16700 -1.4 -4.3 agmatine deiminase family protein compare
ABI39_RS17175 -1.4 -2.9 tetratricopeptide repeat protein compare
ABI39_RS04425 -1.4 -8.3 hypothetical protein compare
ABI39_RS02060 -1.4 -4.7 translocation/assembly module TamB domain-containing protein compare
ABI39_RS04700 -1.4 -3.5 type I DNA topoisomerase compare
ABI39_RS22175 -1.3 -1.3 N-acetylmuramoyl-L-alanine amidase compare
ABI39_RS20090 -1.3 -5.1 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS06920 -1.3 -4.4 glycosyltransferase compare
ABI39_RS11140 -1.3 -1.3 undecaprenyl-phosphate glucose phosphotransferase compare
ABI39_RS04460 -1.3 -9.5 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS17170 -1.3 -2.0 protein BatD compare
ABI39_RS16880 -1.3 -2.7 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS00515 -1.3 -2.6 hypothetical protein compare
ABI39_RS20175 -1.3 -2.5 translation elongation factor 4 compare
ABI39_RS15410 -1.2 -4.0 DUF4296 domain-containing protein compare
ABI39_RS05765 -1.2 -1.8 DUF4294 domain-containing protein compare
ABI39_RS04455 -1.2 -8.8 TonB-dependent receptor compare
ABI39_RS09575 -1.2 -2.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS11655 -1.2 -1.9 MFS transporter compare
ABI39_RS06010 -1.2 -4.2 polysaccharide deacetylase family protein compare
ABI39_RS09855 -1.1 -2.3 polyprenyl synthetase family protein compare
ABI39_RS20405 -1.1 -3.4 GDP-L-fucose synthase compare
ABI39_RS17160 -1.1 -1.8 VWA domain-containing protein compare
ABI39_RS00090 -1.1 -3.2 HAMP domain-containing histidine kinase compare
ABI39_RS17195 -1.1 -6.1 hypothetical protein compare
ABI39_RS04695 -1.1 -4.3 shikimate kinase compare
ABI39_RS16315 -1.1 -1.0 conjugative transposon protein TraK compare
ABI39_RS04970 -1.0 -3.0 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS13465 -1.0 -1.2 DUF3575 domain-containing protein compare
ABI39_RS22350 -1.0 -2.4 glycoside hydrolase family 99-like domain-containing protein compare
ABI39_RS10110 -1.0 -5.8 S9 family peptidase compare
ABI39_RS20060 -1.0 -4.9 YitT family protein compare
ABI39_RS13910 -1.0 -1.3 chaperone modulator CbpM compare
ABI39_RS15770 -1.0 -1.8 hypothetical protein compare
ABI39_RS04865 -1.0 -3.0 type II toxin-antitoxin system RelE/ParE family toxin compare
ABI39_RS06050 -1.0 -2.9 hypothetical protein compare
ABI39_RS12670 -0.9 -2.9 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
ABI39_RS13225 -0.9 -1.8 phosphopyruvate hydratase compare
ABI39_RS04885 -0.9 -2.1 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS13010 -0.9 -3.7 hypothetical protein compare
ABI39_RS14255 -0.9 -2.7 DUF452 family protein compare
ABI39_RS01360 -0.9 -3.5 hypothetical protein compare
ABI39_RS16130 -0.9 -1.2 DUF3945 domain-containing protein compare
ABI39_RS18165 -0.9 -1.6 DUF5024 domain-containing protein compare
ABI39_RS12755 -0.9 -2.1 SurA N-terminal domain-containing protein compare
ABI39_RS18330 -0.9 -4.9 PD40 domain-containing protein compare
ABI39_RS11350 -0.9 -2.1 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS20410 -0.9 -1.9 GDP-mannose 4,6-dehydratase compare
ABI39_RS10450 -0.9 -4.3 ABC transporter ATP-binding protein compare
ABI39_RS15710 -0.9 -1.3 hypothetical protein compare
ABI39_RS13195 -0.9 -2.4 hypothetical protein compare
ABI39_RS08510 -0.9 -2.3 NADH-quinone oxidoreductase subunit NuoK compare
ABI39_RS04930 -0.9 -1.9 helix-turn-helix transcriptional regulator compare
ABI39_RS17245 -0.8 -1.6 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
ABI39_RS01440 -0.8 -4.3 cytidylate kinase-like family protein compare
ABI39_RS15855 -0.8 -2.2 helix-turn-helix transcriptional regulator compare
ABI39_RS15415 -0.8 -3.6 hypothetical protein compare
ABI39_RS04475 -0.8 -5.9 alpha-amylase compare
ABI39_RS20110 -0.8 -1.6 SoxR reducing system RseC family protein compare
ABI39_RS04675 -0.8 -1.1 hypothetical protein compare
ABI39_RS17310 -0.8 -5.3 hypothetical protein compare
ABI39_RS12665 -0.8 -3.7 shikimate dehydrogenase compare
ABI39_RS07500 -0.8 -1.7 hypothetical protein compare
ABI39_RS13835 -0.8 -2.3 DUF3037 domain-containing protein compare
ABI39_RS22855 -0.8 -1.3 hypothetical protein compare
ABI39_RS18385 -0.8 -1.1 helix-turn-helix domain-containing protein compare
ABI39_RS14085 -0.8 -0.9 hypothetical protein compare
ABI39_RS20860 -0.8 -1.2 HU family DNA-binding protein compare
ABI39_RS03830 -0.8 -1.1 ribosome-associated translation inhibitor RaiA compare
ABI39_RS17180 -0.7 -3.2 phosphatase PAP2 family protein compare
ABI39_RS08305 -0.7 -3.1 DUF4831 family protein compare
ABI39_RS04470 -0.7 -3.1 DUF5115 domain-containing protein compare
ABI39_RS20975 -0.7 -1.7 phage holin family protein compare
ABI39_RS09800 -0.7 -1.3 helix-turn-helix transcriptional regulator compare
ABI39_RS10455 -0.7 -4.2 iron ABC transporter permease compare
ABI39_RS13175 -0.7 -2.2 MarC family protein compare
ABI39_RS02285 -0.7 -1.7 DNA mismatch repair endonuclease MutL compare
ABI39_RS05650 -0.7 -3.9 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
ABI39_RS08555 -0.7 -3.2 Trk system potassium transporter TrkA compare
ABI39_RS04465 -0.7 -4.7 SusF/SusE family outer membrane protein compare
ABI39_RS10475 -0.7 -5.5 TonB-dependent receptor compare
ABI39_RS07210 -0.7 -1.5 hypothetical protein compare
ABI39_RS05405 -0.7 -4.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABI39_RS00240 -0.7 -1.8 NigD-like N-terminal domain-containing protein compare
ABI39_RS06925 -0.7 -3.7 glycosyltransferase compare
ABI39_RS02845 -0.7 -4.0 RluA family pseudouridine synthase compare
ABI39_RS09825 -0.7 -1.7 DUF1573 domain-containing protein compare
ABI39_RS10470 -0.7 -5.1 hypothetical protein compare
ABI39_RS00250 -0.7 -1.8 chloride channel protein compare
ABI39_RS10380 -0.7 -1.2 helix-turn-helix transcriptional regulator compare
ABI39_RS03070 -0.7 -1.7 helix-turn-helix domain-containing protein compare
ABI39_RS16295 -0.7 -2.0 TraG family conjugative transposon ATPase compare
ABI39_RS11930 -0.7 -1.5 recombinase RecA compare
ABI39_RS20440 -0.7 -4.5 SLBB domain-containing protein compare
ABI39_RS15950 -0.7 -2.3 hypothetical protein compare
ABI39_RS06070 -0.7 -1.1 hypothetical protein compare
ABI39_RS15840 -0.7 -3.0 hypothetical protein compare
ABI39_RS16695 -0.7 -3.3 carbon-nitrogen hydrolase compare
ABI39_RS05280 -0.7 -5.2 S41 family peptidase compare
ABI39_RS22360 -0.7 -1.1 potassium-transporting ATPase subunit F compare
ABI39_RS12645 -0.6 -4.1 chorismate synthase compare
ABI39_RS16915 -0.6 -4.9 DUF1015 domain-containing protein compare
ABI39_RS19805 -0.6 -1.9 hypothetical protein compare
ABI39_RS20650 -0.6 -1.9 hypothetical protein compare
ABI39_RS00520 -0.6 -3.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABI39_RS07325 -0.6 -2.2 GNAT family N-acetyltransferase compare
ABI39_RS11285 -0.6 -3.0 hypothetical protein compare
ABI39_RS19465 -0.6 -2.0 hypothetical protein compare
ABI39_RS14715 -0.6 -2.0 RidA family protein compare
ABI39_RS15755 -0.6 -2.3 DUF3127 domain-containing protein compare
ABI39_RS19635 -0.6 -3.0 hypothetical protein compare
ABI39_RS05960 -0.6 -1.9 PH domain-containing protein compare
ABI39_RS21190 -0.6 -1.1 dihydrodipicolinate synthase family protein compare
ABI39_RS07805 -0.6 -1.1 CYTH domain-containing protein compare
ABI39_RS04420 -0.6 -1.5 hypothetical protein compare
ABI39_RS09245 -0.6 -4.2 cardiolipin synthase compare
ABI39_RS15775 -0.6 -1.0 hypothetical protein compare
ABI39_RS07090 -0.6 -2.5 hypothetical protein compare
ABI39_RS22305 -0.6 -0.8 DUF3408 domain-containing protein compare
ABI39_RS17755 -0.6 -1.7 thiazole synthase compare
ABI39_RS01250 -0.6 -1.2 hypothetical protein compare
ABI39_RS06220 -0.6 -4.1 glycosyltransferase family 2 protein compare
ABI39_RS17320 -0.6 -1.4 YhcH/YjgK/YiaL family protein compare
ABI39_RS15175 -0.6 -1.1 hypothetical protein compare
ABI39_RS04240 -0.6 -1.9 glycine cleavage system protein GcvH compare
ABI39_RS10460 -0.6 -2.3 ABC transporter substrate-binding protein compare
ABI39_RS13000 -0.6 -2.4 sigma-54-dependent Fis family transcriptional regulator compare
ABI39_RS15340 -0.6 -3.1 peptide MFS transporter compare
ABI39_RS13410 -0.6 -1.4 HU family DNA-binding protein compare
ABI39_RS10465 -0.6 -3.1 putative DNA binding domain-containing protein compare
ABI39_RS13170 -0.6 -3.4 Crp/Fnr family transcriptional regulator compare
ABI39_RS06235 -0.6 -3.0 UDP-galactopyranose mutase compare
ABI39_RS22820 -0.6 -0.5 hypothetical protein compare
ABI39_RS08135 -0.6 -0.9 YicC family protein compare
ABI39_RS05175 -0.5 -2.0 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS11230 -0.5 -1.3 site-specific integrase compare
ABI39_RS21195 -0.5 -2.8 AGE family epimerase/isomerase compare
ABI39_RS17315 -0.5 -3.0 alpha amylase C-terminal domain-containing protein compare
ABI39_RS20435 -0.5 -3.0 chain-length determining protein compare
ABI39_RS20140 -0.5 -1.8 copper homeostasis protein CutC compare
ABI39_RS12075 -0.5 -1.0 N-acetylmuramoyl-L-alanine amidase compare
ABI39_RS15890 -0.5 -3.2 phosphoadenosine phosphosulfate reductase family protein compare
ABI39_RS09935 -0.5 -2.1 DNA topoisomerase 3 compare
ABI39_RS20360 -0.5 -2.1 phosphate signaling complex protein PhoU compare
ABI39_RS09230 -0.5 -0.9 hypothetical protein compare
ABI39_RS12150 -0.5 -1.9 hotdog fold thioesterase compare
ABI39_RS21940 -0.5 -1.4 helix-turn-helix domain-containing protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola dorei CL03T12C01 in carbon source experiments

For carbon source Mucin from porcine stomach,Type II; autoclaved across organisms