Experiment set3S312 for Phocaeicola dorei CL03T12C01

Compare to:

Pectic galactan from potato; filtered 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS02980 -6.6 -6.6 N-acetyltransferase compare
ABI39_RS04695 -6.4 -5.1 shikimate kinase compare
ABI39_RS02975 -6.3 -8.8 argininosuccinate synthase compare
ABI39_RS10495 -6.2 -6.6 prephenate dehydrogenase compare
ABI39_RS02970 -6.2 -8.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS07790 -6.2 -7.0 M20 family metallo-hydrolase compare
ABI39_RS02870 -6.0 -6.3 acetylornithine carbamoyltransferase compare
ABI39_RS12665 -6.0 -5.8 shikimate dehydrogenase compare
ABI39_RS04245 -5.7 -1.2 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS12645 -5.6 -14.5 chorismate synthase compare
ABI39_RS10205 -5.6 -4.9 3-isopropylmalate dehydratase small subunit compare
ABI39_RS21075 -5.5 -4.6 tryptophan synthase subunit alpha compare
ABI39_RS08185 -5.3 -5.8 hemolysin III family protein compare
ABI39_RS15380 -5.3 -2.4 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
ABI39_RS10260 -5.3 -9.4 adenylosuccinate synthase compare
ABI39_RS07005 -5.3 -4.7 type II 3-dehydroquinate dehydratase compare
ABI39_RS21065 -5.2 -6.1 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS20085 -5.2 -6.0 electron transport complex subunit E compare
ABI39_RS10430 -5.2 -12.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS06010 -5.2 -6.2 polysaccharide deacetylase family protein compare
ABI39_RS20105 -5.2 -5.4 Fe-S cluster domain-containing protein compare
ABI39_RS11835 -5.1 -4.6 histidinol dehydrogenase compare
ABI39_RS10510 -5.1 -9.4 prephenate dehydratase compare
ABI39_RS19925 -5.1 -6.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS15480 -5.0 -6.4 tagaturonate reductase compare
ABI39_RS16905 -5.0 -11.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS04685 -5.0 -4.2 acetylglutamate kinase compare
ABI39_RS01360 -4.9 -6.7 hypothetical protein compare
ABI39_RS21060 -4.9 -7.1 anthranilate phosphoribosyltransferase compare
ABI39_RS07095 -4.9 -17.6 argininosuccinate lyase compare
ABI39_RS20080 -4.8 -6.4 electron transport complex subunit RsxA compare
ABI39_RS10640 -4.8 -9.6 serine dehydratase subunit alpha family protein compare
ABI39_RS03005 -4.7 -9.0 rhamnulose-1-phosphate aldolase compare
ABI39_RS15365 -4.7 -3.3 altronate dehydratase compare
ABI39_RS11405 -4.7 -9.8 hypothetical protein compare
ABI39_RS01655 -4.7 -8.6 methylmalonyl-CoA mutase compare
ABI39_RS10435 -4.7 -9.3 cofactor-independent phosphoglycerate mutase compare
ABI39_RS12715 -4.7 -11.0 dihydroxy-acid dehydratase compare
ABI39_RS10500 -4.7 -4.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS14030 -4.6 -3.8 MFS transporter compare
ABI39_RS16910 -4.6 -9.8 3-phosphoglycerate dehydrogenase compare
ABI39_RS11830 -4.6 -3.4 ATP phosphoribosyltransferase compare
ABI39_RS14465 -4.6 -7.4 hypothetical protein compare
ABI39_RS15375 -4.5 -12.4 sugar kinase compare
ABI39_RS10505 -4.5 -10.4 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS20090 -4.5 -7.4 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS12415 -4.4 -3.3 biotin/lipoyl-binding protein compare
ABI39_RS10215 -4.4 -10.1 3-isopropylmalate dehydrogenase compare
ABI39_RS10200 -4.4 -10.6 3-isopropylmalate dehydratase large subunit compare
ABI39_RS10195 -4.3 -8.8 2-isopropylmalate synthase compare
ABI39_RS05660 -4.3 -8.8 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS15475 -4.3 -7.1 glucuronate isomerase compare
ABI39_RS18330 -4.3 -10.3 PD40 domain-containing protein compare
ABI39_RS20100 -4.2 -7.2 electron transport complex subunit RsxC compare
ABI39_RS02880 -4.2 -8.9 glutamate 5-kinase compare
ABI39_RS09685 -4.2 -1.7 hypothetical protein compare
ABI39_RS11845 -4.2 -8.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS21050 -4.2 -7.1 anthranilate synthase component I family protein compare
ABI39_RS02875 -4.2 -9.8 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS10110 -4.1 -13.5 S9 family peptidase compare
ABI39_RS12675 -4.1 -4.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS06380 -4.1 -8.3 GH3 auxin-responsive promoter family protein compare
ABI39_RS12720 -4.1 -12.3 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS10440 -4.0 -6.3 threonine synthase compare
ABI39_RS17195 -4.0 -11.2 hypothetical protein compare
ABI39_RS06995 -4.0 -7.4 tetratricopeptide repeat protein compare
ABI39_RS12735 -4.0 -8.0 ketol-acid reductoisomerase compare
ABI39_RS11840 -3.9 -5.0 histidinol-phosphate transaminase compare
ABI39_RS02960 -3.9 -11.1 pyrroline-5-carboxylate reductase compare
ABI39_RS01650 -3.9 -8.2 methylmalonyl-CoA mutase small subunit compare
ABI39_RS02315 -3.9 -8.6 IMP dehydrogenase compare
ABI39_RS00770 -3.8 -13.3 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS21045 -3.8 -5.7 tryptophan synthase subunit beta compare
ABI39_RS00475 -3.8 -5.5 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS20095 -3.8 -10.1 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS19930 -3.8 -4.0 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS20070 -3.8 -7.7 UDP-glucose 4-epimerase GalE compare
ABI39_RS13185 -3.7 -1.3 manganese efflux pump compare
ABI39_RS16875 -3.7 -2.4 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS17950 -3.6 -1.8 Crp/Fnr family transcriptional regulator compare
ABI39_RS04795 -3.6 -1.3 M28 family peptidase compare
ABI39_RS19985 -3.6 -1.8 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS06055 -3.6 -8.1 phosphoribosylamine--glycine ligase compare
ABI39_RS08305 -3.5 -4.1 DUF4831 family protein compare
ABI39_RS00405 -3.5 -19.5 phosphoribosylformylglycinamidine synthase compare
ABI39_RS18745 -3.4 -3.4 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS12420 -3.4 -4.6 OadG family protein compare
ABI39_RS04280 -3.4 -4.8 DUF4292 domain-containing protein compare
ABI39_RS15610 -3.4 -1.0 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS20355 -3.3 -12.9 carboxypeptidase-like regulatory domain-containing protein compare
ABI39_RS12425 -3.2 -8.1 acyl-CoA carboxylase subunit beta compare
ABI39_RS08850 -3.2 -2.9 toprim domain-containing protein compare
ABI39_RS06115 -3.2 -9.4 phosphatase PAP2 family protein compare
ABI39_RS12770 -3.2 -2.9 hypothetical protein compare
ABI39_RS19935 -3.2 -6.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS12725 -3.2 -3.7 acetolactate synthase small subunit compare
ABI39_RS10650 -3.1 -12.6 AraC family transcriptional regulator compare
ABI39_RS19950 -3.1 -5.1 diaminopimelate decarboxylase compare
ABI39_RS02290 -3.1 -2.8 hypothetical protein compare
ABI39_RS00515 -3.1 -2.9 hypothetical protein compare
ABI39_RS08195 -3.0 -4.1 hypothetical protein compare
ABI39_RS09245 -2.9 -13.2 cardiolipin synthase compare
ABI39_RS01415 -2.9 -2.9 branched-chain amino acid aminotransferase compare
ABI39_RS17175 -2.9 -4.4 tetratricopeptide repeat protein compare
ABI39_RS14560 -2.9 -2.4 aspartate 1-decarboxylase compare
ABI39_RS09040 -2.9 -12.1 MFS transporter compare
ABI39_RS10210 -2.8 -9.0 2-isopropylmalate synthase compare
ABI39_RS16880 -2.8 -2.7 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS20395 -2.8 -2.2 DedA family protein compare
ABI39_RS00205 -2.8 -3.9 phosphoglucosamine mutase compare
ABI39_RS17420 -2.8 -7.0 serine hydroxymethyltransferase compare
ABI39_RS11630 -2.8 -4.8 L-ribulose-5-phosphate 4-epimerase compare
ABI39_RS17180 -2.7 -6.1 phosphatase PAP2 family protein compare
ABI39_RS09845 -2.7 -2.7 (d)CMP kinase compare
ABI39_RS15320 -2.7 -9.7 PorT family protein compare
ABI39_RS16885 -2.7 -2.1 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS20965 -2.7 -1.6 SPOR domain-containing protein compare
ABI39_RS15410 -2.7 -4.9 DUF4296 domain-containing protein compare
ABI39_RS09850 -2.7 -3.6 energy transducer TonB compare
ABI39_RS06670 -2.7 -12.5 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS02965 -2.7 -9.0 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS04930 -2.6 -4.1 helix-turn-helix transcriptional regulator compare
ABI39_RS15760 -2.6 -1.1 hypothetical protein compare
ABI39_RS19920 -2.6 -4.0 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS17140 -2.6 -1.9 AAA family ATPase compare
ABI39_RS09575 -2.5 -2.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS21350 -2.5 -2.0 aspartate--ammonia ligase compare
ABI39_RS13180 -2.5 -2.4 FAD:protein FMN transferase compare
ABI39_RS06675 -2.5 -7.5 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS04145 -2.5 -1.1 transcription elongation factor GreA compare
ABI39_RS06220 -2.5 -9.0 glycosyltransferase family 2 protein compare
ABI39_RS02500 -2.4 -10.0 pyridoxine 5'-phosphate synthase compare
ABI39_RS04690 -2.4 -8.1 biosynthetic arginine decarboxylase compare
ABI39_RS20110 -2.4 -2.2 SoxR reducing system RseC family protein compare
ABI39_RS11625 -2.4 -12.2 L-arabinose isomerase compare
ABI39_RS18740 -2.3 -6.1 ATP-binding protein compare
ABI39_RS17170 -2.3 -1.4 protein BatD compare
ABI39_RS06235 -2.3 -6.4 UDP-galactopyranose mutase compare
ABI39_RS08035 -2.3 -2.2 adenylosuccinate lyase compare
ABI39_RS12755 -2.3 -1.6 SurA N-terminal domain-containing protein compare
ABI39_RS06250 -2.3 -9.3 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS16870 -2.3 -2.9 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS11620 -2.2 -10.2 FGGY-family carbohydrate kinase compare
ABI39_RS02755 -2.2 -1.3 glycosyltransferase compare
ABI39_RS11485 -2.2 -3.1 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS01300 -2.2 -7.0 NADP-specific glutamate dehydrogenase compare
ABI39_RS14715 -2.2 -4.7 RidA family protein compare
ABI39_RS14480 -2.2 -7.4 ferrous iron transport protein B compare
ABI39_RS14265 -2.1 -6.0 ATP-dependent dethiobiotin synthetase BioD compare
ABI39_RS05280 -2.1 -12.1 S41 family peptidase compare
ABI39_RS09855 -2.1 -2.0 polyprenyl synthetase family protein compare
ABI39_RS07090 -2.1 -1.3 hypothetical protein compare
ABI39_RS05175 -2.1 -3.3 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS08480 -2.1 -0.8 histidine kinase compare
ABI39_RS04950 -2.1 -2.3 DEAD/DEAH box helicase compare
ABI39_RS02460 -2.1 -1.8 peptidoglycan DD-metalloendopeptidase family protein compare
ABI39_RS22955 -2.0 -2.0 hypothetical protein compare
ABI39_RS03320 -2.0 -8.3 FecR domain-containing protein compare
ABI39_RS15665 -2.0 -5.0 pyridoxal phosphate-dependent class II aminotransferase compare
ABI39_RS16620 -2.0 -0.8 phage integrase SAM-like domain-containing protein compare
ABI39_RS00520 -2.0 -7.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABI39_RS21055 -2.0 -2.8 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS14245 -2.0 -9.7 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS10870 -2.0 -9.4 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS20930 -2.0 -11.4 tetratricopeptide repeat protein compare
ABI39_RS04505 -2.0 -5.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS16315 -2.0 -0.8 conjugative transposon protein TraK compare
ABI39_RS21190 -2.0 -1.6 dihydrodipicolinate synthase family protein compare
ABI39_RS19945 -2.0 -7.5 aspartate kinase compare
ABI39_RS17160 -1.9 -1.7 VWA domain-containing protein compare
ABI39_RS15415 -1.9 -4.1 hypothetical protein compare
ABI39_RS11640 -1.9 -8.5 sodium:solute symporter compare
ABI39_RS17335 -1.9 -8.4 phosphatidylinositol-4-phosphate 5-kinase compare
ABI39_RS18910 -1.9 -1.5 preprotein translocase subunit YajC compare
ABI39_RS09515 -1.9 -2.5 nucleoside deaminase compare
ABI39_RS11645 -1.8 -7.7 galactose mutarotase compare
ABI39_RS18025 -1.8 -1.0 LytTR family transcriptional regulator compare
ABI39_RS09230 -1.8 -1.3 hypothetical protein compare
ABI39_RS16895 -1.8 -2.4 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS01990 -1.8 -2.7 transketolase compare
ABI39_RS12430 -1.8 -0.6 methylmalonyl-CoA epimerase compare
ABI39_RS04700 -1.7 -2.8 type I DNA topoisomerase compare
ABI39_RS00095 -1.7 -7.0 elongation factor G compare
ABI39_RS11545 -1.7 -6.3 hypothetical protein compare
ABI39_RS09830 -1.7 -4.7 methylmalonyl Co-A mutase-associated GTPase MeaB compare
ABI39_RS15525 -1.7 -3.6 precorrin-3B C(17)-methyltransferase compare
ABI39_RS14250 -1.7 -5.1 8-amino-7-oxononanoate synthase compare
ABI39_RS03160 -1.7 -0.8 helix-turn-helix domain-containing protein compare
ABI39_RS14235 -1.7 -1.8 hypothetical protein compare
ABI39_RS15500 -1.7 -4.6 iron ABC transporter permease compare
ABI39_RS08900 -1.7 -0.8 hypothetical protein compare
ABI39_RS16130 -1.7 -1.3 DUF3945 domain-containing protein compare
ABI39_RS13855 -1.7 -4.3 response regulator transcription factor compare
ABI39_RS09770 -1.7 -4.1 DUF349 domain-containing protein compare
ABI39_RS14260 -1.7 -7.3 malonyl-ACP O-methyltransferase BioC compare
ABI39_RS08135 -1.6 -1.5 YicC family protein compare
ABI39_RS15490 -1.6 -7.4 precorrin-2 C(20)-methyltransferase compare
ABI39_RS17150 -1.6 -2.9 hypothetical protein compare
ABI39_RS06925 -1.6 -7.3 glycosyltransferase compare
ABI39_RS16705 -1.6 -10.8 translocation/assembly module TamB compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Pectic galactan from potato; filtered in Phocaeicola dorei CL03T12C01

For carbon source Pectic galactan from potato; filtered across organisms