Experiment set3S309 for Phocaeicola dorei CL03T12C01

Compare to:

Pectic galactan from potato; autoclaved 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS07005 -8.6 -5.7 type II 3-dehydroquinate dehydratase compare
ABI39_RS07095 -8.0 -9.5 argininosuccinate lyase compare
ABI39_RS02975 -7.9 -7.7 argininosuccinate synthase compare
ABI39_RS07790 -7.5 -7.3 M20 family metallo-hydrolase compare
ABI39_RS12645 -7.3 -11.1 chorismate synthase compare
ABI39_RS10260 -7.3 -7.1 adenylosuccinate synthase compare
ABI39_RS02980 -7.2 -7.0 N-acetyltransferase compare
ABI39_RS12675 -7.2 -4.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS02875 -7.1 -8.5 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS04685 -7.1 -5.4 acetylglutamate kinase compare
ABI39_RS21050 -6.9 -6.7 anthranilate synthase component I family protein compare
ABI39_RS02880 -6.9 -9.4 glutamate 5-kinase compare
ABI39_RS10510 -6.8 -6.6 prephenate dehydratase compare
ABI39_RS10495 -6.7 -6.6 prephenate dehydrogenase compare
ABI39_RS10430 -6.7 -9.2 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS02960 -6.7 -10.2 pyrroline-5-carboxylate reductase compare
ABI39_RS02970 -6.6 -7.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS12715 -6.5 -9.0 dihydroxy-acid dehydratase compare
ABI39_RS10505 -6.5 -7.8 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS04695 -6.4 -6.5 shikimate kinase compare
ABI39_RS16905 -6.3 -9.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS21075 -6.3 -6.0 tryptophan synthase subunit alpha compare
ABI39_RS19935 -6.2 -7.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS21065 -6.2 -7.0 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS15365 -6.1 -4.2 altronate dehydratase compare
ABI39_RS10435 -6.0 -9.2 cofactor-independent phosphoglycerate mutase compare
ABI39_RS12665 -6.0 -4.2 shikimate dehydrogenase compare
ABI39_RS10195 -5.9 -10.5 2-isopropylmalate synthase compare
ABI39_RS06055 -5.9 -7.0 phosphoribosylamine--glycine ligase compare
ABI39_RS10200 -5.9 -13.2 3-isopropylmalate dehydratase large subunit compare
ABI39_RS11405 -5.9 -9.0 hypothetical protein compare
ABI39_RS16910 -5.7 -9.5 3-phosphoglycerate dehydrogenase compare
ABI39_RS00475 -5.6 -4.3 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS02315 -5.6 -7.7 IMP dehydrogenase compare
ABI39_RS12720 -5.6 -10.8 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS00405 -5.6 -13.9 phosphoribosylformylglycinamidine synthase compare
ABI39_RS05660 -5.5 -7.6 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS21060 -5.5 -8.9 anthranilate phosphoribosyltransferase compare
ABI39_RS04245 -5.5 -1.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS11830 -5.5 -3.8 ATP phosphoribosyltransferase compare
ABI39_RS19925 -5.5 -7.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS01655 -5.5 -9.8 methylmalonyl-CoA mutase compare
ABI39_RS02870 -5.4 -5.3 acetylornithine carbamoyltransferase compare
ABI39_RS08305 -5.4 -6.4 DUF4831 family protein compare
ABI39_RS15375 -5.4 -10.3 sugar kinase compare
ABI39_RS10205 -5.4 -5.8 3-isopropylmalate dehydratase small subunit compare
ABI39_RS11845 -5.3 -3.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS20105 -5.3 -5.1 Fe-S cluster domain-containing protein compare
ABI39_RS00770 -5.2 -12.6 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS11840 -5.2 -3.6 histidinol-phosphate transaminase compare
ABI39_RS08195 -5.1 -6.1 hypothetical protein compare
ABI39_RS12735 -5.1 -7.1 ketol-acid reductoisomerase compare
ABI39_RS17195 -5.0 -9.0 hypothetical protein compare
ABI39_RS10215 -5.0 -9.4 3-isopropylmalate dehydrogenase compare
ABI39_RS15380 -5.0 -3.5 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
ABI39_RS06675 -5.0 -7.3 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS20080 -4.9 -6.7 electron transport complex subunit RsxA compare
ABI39_RS19930 -4.9 -4.1 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS20070 -4.9 -4.8 UDP-glucose 4-epimerase GalE compare
ABI39_RS10440 -4.9 -7.1 threonine synthase compare
ABI39_RS01360 -4.8 -5.7 hypothetical protein compare
ABI39_RS10640 -4.8 -10.6 serine dehydratase subunit alpha family protein compare
ABI39_RS03005 -4.8 -5.8 rhamnulose-1-phosphate aldolase compare
ABI39_RS06670 -4.8 -12.7 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS11835 -4.8 -4.6 histidinol dehydrogenase compare
ABI39_RS14560 -4.8 -3.3 aspartate 1-decarboxylase compare
ABI39_RS15475 -4.8 -8.5 glucuronate isomerase compare
ABI39_RS11650 -4.7 -8.7 galactokinase compare
ABI39_RS12415 -4.7 -4.6 biotin/lipoyl-binding protein compare
ABI39_RS14465 -4.7 -8.4 hypothetical protein compare
ABI39_RS17420 -4.7 -6.7 serine hydroxymethyltransferase compare
ABI39_RS02290 -4.7 -3.2 hypothetical protein compare
ABI39_RS18330 -4.7 -9.5 PD40 domain-containing protein compare
ABI39_RS19385 -4.6 -3.2 hypothetical protein compare
ABI39_RS21045 -4.6 -5.5 tryptophan synthase subunit beta compare
ABI39_RS10210 -4.6 -8.5 2-isopropylmalate synthase compare
ABI39_RS10110 -4.6 -10.6 S9 family peptidase compare
ABI39_RS06380 -4.5 -8.1 GH3 auxin-responsive promoter family protein compare
ABI39_RS20085 -4.5 -6.3 electron transport complex subunit E compare
ABI39_RS19985 -4.4 -2.5 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS20090 -4.4 -6.8 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS10500 -4.4 -4.2 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS12770 -4.3 -3.0 hypothetical protein compare
ABI39_RS09850 -4.3 -2.9 energy transducer TonB compare
ABI39_RS06010 -4.2 -6.7 polysaccharide deacetylase family protein compare
ABI39_RS12425 -4.2 -8.5 acyl-CoA carboxylase subunit beta compare
ABI39_RS20095 -4.2 -8.7 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS02965 -4.2 -10.7 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS06995 -4.1 -7.9 tetratricopeptide repeat protein compare
ABI39_RS20100 -4.1 -8.7 electron transport complex subunit RsxC compare
ABI39_RS01650 -4.0 -8.9 methylmalonyl-CoA mutase small subunit compare
ABI39_RS09685 -4.0 -2.6 hypothetical protein compare
ABI39_RS00515 -4.0 -3.9 hypothetical protein compare
ABI39_RS14030 -4.0 -4.7 MFS transporter compare
ABI39_RS04930 -4.0 -3.8 helix-turn-helix transcriptional regulator compare
ABI39_RS09245 -3.9 -11.8 cardiolipin synthase compare
ABI39_RS13845 -3.8 -1.2 histone H1 compare
ABI39_RS15480 -3.7 -6.4 tagaturonate reductase compare
ABI39_RS12150 -3.7 -5.5 hotdog fold thioesterase compare
ABI39_RS02470 -3.6 -3.5 ATP-dependent DNA helicase RecG compare
ABI39_RS04690 -3.6 -8.9 biosynthetic arginine decarboxylase compare
ABI39_RS20355 -3.5 -13.6 carboxypeptidase-like regulatory domain-containing protein compare
ABI39_RS13185 -3.5 -2.0 manganese efflux pump compare
ABI39_RS11630 -3.5 -6.2 L-ribulose-5-phosphate 4-epimerase compare
ABI39_RS04795 -3.5 -2.0 M28 family peptidase compare
ABI39_RS15410 -3.4 -4.8 DUF4296 domain-containing protein compare
ABI39_RS16875 -3.4 -2.3 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS17950 -3.4 -2.3 Crp/Fnr family transcriptional regulator compare
ABI39_RS18745 -3.4 -2.3 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS20965 -3.3 -2.6 SPOR domain-containing protein compare
ABI39_RS19950 -3.3 -4.5 diaminopimelate decarboxylase compare
ABI39_RS19920 -3.2 -5.2 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS12955 -3.1 -6.6 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS00205 -3.1 -3.0 phosphoglucosamine mutase compare
ABI39_RS21350 -3.1 -2.1 aspartate--ammonia ligase compare
ABI39_RS10650 -3.1 -11.3 AraC family transcriptional regulator compare
ABI39_RS05175 -3.1 -4.3 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS22955 -3.1 -2.8 hypothetical protein compare
ABI39_RS02285 -3.0 -3.1 DNA mismatch repair endonuclease MutL compare
ABI39_RS08185 -3.0 -4.1 hemolysin III family protein compare
ABI39_RS04280 -3.0 -4.5 DUF4292 domain-containing protein compare
ABI39_RS15320 -2.9 -9.2 PorT family protein compare
ABI39_RS02500 -2.9 -7.8 pyridoxine 5'-phosphate synthase compare
ABI39_RS01300 -2.9 -6.2 NADP-specific glutamate dehydrogenase compare
ABI39_RS16870 -2.9 -2.7 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS01415 -2.8 -2.7 branched-chain amino acid aminotransferase compare
ABI39_RS12420 -2.8 -5.4 OadG family protein compare
ABI39_RS21055 -2.8 -3.7 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS17175 -2.8 -3.8 tetratricopeptide repeat protein compare
ABI39_RS14715 -2.8 -4.7 RidA family protein compare
ABI39_RS04700 -2.8 -2.7 type I DNA topoisomerase compare
ABI39_RS09575 -2.7 -1.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS08850 -2.7 -4.1 toprim domain-containing protein compare
ABI39_RS09845 -2.7 -3.2 (d)CMP kinase compare
ABI39_RS06115 -2.7 -8.6 phosphatase PAP2 family protein compare
ABI39_RS17140 -2.7 -1.8 AAA family ATPase compare
ABI39_RS19945 -2.7 -7.3 aspartate kinase compare
ABI39_RS16620 -2.5 -1.2 phage integrase SAM-like domain-containing protein compare
ABI39_RS04460 -2.5 -11.0 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS15415 -2.5 -3.5 hypothetical protein compare
ABI39_RS00090 -2.3 -4.1 HAMP domain-containing histidine kinase compare
ABI39_RS04950 -2.3 -2.7 DEAD/DEAH box helicase compare
ABI39_RS06235 -2.3 -6.2 UDP-galactopyranose mutase compare
ABI39_RS06250 -2.3 -10.0 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS04425 -2.3 -8.1 hypothetical protein compare
ABI39_RS04455 -2.3 -9.9 TonB-dependent receptor compare
ABI39_RS16880 -2.3 -2.7 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS11880 -2.3 -1.0 hypothetical protein compare
ABI39_RS17150 -2.3 -2.6 hypothetical protein compare
ABI39_RS10085 -2.3 -3.0 enoyl-ACP reductase compare
ABI39_RS11545 -2.2 -7.4 hypothetical protein compare
ABI39_RS14480 -2.2 -6.3 ferrous iron transport protein B compare
ABI39_RS13180 -2.2 -2.2 FAD:protein FMN transferase compare
ABI39_RS02755 -2.2 -1.5 glycosyltransferase compare
ABI39_RS12755 -2.2 -1.5 SurA N-terminal domain-containing protein compare
ABI39_RS09040 -2.2 -10.9 MFS transporter compare
ABI39_RS16885 -2.2 -2.4 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS17335 -2.1 -8.6 phosphatidylinositol-4-phosphate 5-kinase compare
ABI39_RS10870 -2.1 -7.9 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS03320 -2.1 -6.5 FecR domain-containing protein compare
ABI39_RS17170 -2.1 -1.4 protein BatD compare
ABI39_RS07090 -2.1 -1.2 hypothetical protein compare
ABI39_RS09515 -2.1 -2.5 nucleoside deaminase compare
ABI39_RS12725 -2.1 -3.7 acetolactate synthase small subunit compare
ABI39_RS18740 -2.1 -4.7 ATP-binding protein compare
ABI39_RS11485 -2.0 -3.7 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS09855 -2.0 -1.9 polyprenyl synthetase family protein compare
ABI39_RS08035 -2.0 -1.9 adenylosuccinate lyase compare
ABI39_RS20930 -2.0 -8.1 tetratricopeptide repeat protein compare
ABI39_RS17160 -2.0 -1.3 VWA domain-containing protein compare
ABI39_RS06220 -2.0 -7.9 glycosyltransferase family 2 protein compare
ABI39_RS17755 -2.0 -2.9 thiazole synthase compare
ABI39_RS12430 -1.9 -0.9 methylmalonyl-CoA epimerase compare
ABI39_RS18660 -1.9 -1.2 Hsp20/alpha crystallin family protein compare
ABI39_RS16895 -1.9 -2.8 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS03170 -1.9 -1.3 plasmid mobilization relaxosome protein MobC compare
ABI39_RS04505 -1.9 -5.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS02355 -1.9 -3.9 ABC transporter ATP-binding protein compare
ABI39_RS02480 -1.9 -2.0 DJ-1/PfpI family protein compare
ABI39_RS05280 -1.8 -6.8 S41 family peptidase compare
ABI39_RS18025 -1.8 -1.3 LytTR family transcriptional regulator compare
ABI39_RS11620 -1.8 -7.5 FGGY-family carbohydrate kinase compare
ABI39_RS16445 -1.8 -2.3 alpha-ribazole phosphatase compare
ABI39_RS07795 -1.8 -6.8 long-chain fatty acid--CoA ligase compare
ABI39_RS08135 -1.8 -1.8 YicC family protein compare
ABI39_RS23150 -1.7 -1.0 S26 family signal peptidase compare
ABI39_RS16695 -1.7 -8.3 carbon-nitrogen hydrolase compare
ABI39_RS13465 -1.7 -2.0 DUF3575 domain-containing protein compare
ABI39_RS17180 -1.7 -3.9 phosphatase PAP2 family protein compare
ABI39_RS11625 -1.7 -9.7 L-arabinose isomerase compare
ABI39_RS15505 -1.7 -4.5 ABC transporter ATP-binding protein compare
ABI39_RS16450 -1.7 -4.0 adenosylcobinamide-GDP ribazoletransferase compare
ABI39_RS11640 -1.7 -7.1 sodium:solute symporter compare
ABI39_RS02460 -1.7 -2.2 peptidoglycan DD-metalloendopeptidase family protein compare
ABI39_RS00095 -1.7 -7.1 elongation factor G compare
ABI39_RS18170 -1.7 -1.3 hypothetical protein compare
ABI39_RS15650 -1.7 -5.4 cobyrinate a,c-diamide synthase compare
ABI39_RS17310 -1.7 -6.7 hypothetical protein compare
ABI39_RS04860 -1.7 -1.6 HigA family addiction module antidote protein compare
ABI39_RS17465 -1.7 -6.5 DUF3078 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola dorei CL03T12C01 in carbon source experiments

For carbon source Pectic galactan from potato; autoclaved across organisms