Experiment set3S306 for Phocaeicola dorei CL03T12C01

Compare to:

Xylan from Beechwood; autoclaved 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS02975 -9.2 -6.3 argininosuccinate synthase compare
ABI39_RS04695 -8.8 -5.0 shikimate kinase compare
ABI39_RS19930 -8.5 -4.1 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS02980 -8.5 -5.7 N-acetyltransferase compare
ABI39_RS19925 -8.3 -4.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS12675 -7.8 -3.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS02880 -7.8 -10.5 glutamate 5-kinase compare
ABI39_RS12645 -7.7 -13.8 chorismate synthase compare
ABI39_RS02960 -7.7 -10.7 pyrroline-5-carboxylate reductase compare
ABI39_RS21060 -7.7 -8.8 anthranilate phosphoribosyltransferase compare
ABI39_RS06055 -7.6 -5.3 phosphoribosylamine--glycine ligase compare
ABI39_RS02875 -7.6 -10.4 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS07005 -7.5 -5.3 type II 3-dehydroquinate dehydratase compare
ABI39_RS02970 -7.5 -7.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS06010 -7.5 -5.1 polysaccharide deacetylase family protein compare
ABI39_RS10260 -7.4 -10.1 adenylosuccinate synthase compare
ABI39_RS07790 -7.3 -7.4 M20 family metallo-hydrolase compare
ABI39_RS16905 -7.3 -10.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS10205 -7.2 -5.2 3-isopropylmalate dehydratase small subunit compare
ABI39_RS02870 -7.1 -7.4 acetylornithine carbamoyltransferase compare
ABI39_RS12735 -7.1 -4.9 ketol-acid reductoisomerase compare
ABI39_RS10505 -7.0 -11.0 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS21065 -6.8 -6.1 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS07095 -6.8 -20.0 argininosuccinate lyase compare
ABI39_RS20450 -6.8 -8.1 carbohydrate kinase compare
ABI39_RS10495 -6.8 -6.6 prephenate dehydrogenase compare
ABI39_RS12665 -6.7 -4.7 shikimate dehydrogenase compare
ABI39_RS12715 -6.6 -12.7 dihydroxy-acid dehydratase compare
ABI39_RS12415 -6.5 -3.4 biotin/lipoyl-binding protein compare
ABI39_RS10640 -6.4 -11.3 serine dehydratase subunit alpha family protein compare
ABI39_RS20445 -6.4 -7.1 xylose isomerase compare
ABI39_RS10430 -6.3 -14.0 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS05660 -6.2 -8.2 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS10435 -6.1 -10.5 cofactor-independent phosphoglycerate mutase compare
ABI39_RS11830 -6.1 -3.5 ATP phosphoribosyltransferase compare
ABI39_RS10440 -6.1 -6.6 threonine synthase compare
ABI39_RS02315 -6.0 -10.1 IMP dehydrogenase compare
ABI39_RS20100 -6.0 -7.2 electron transport complex subunit RsxC compare
ABI39_RS04245 -6.0 -1.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS10510 -6.0 -9.1 prephenate dehydratase compare
ABI39_RS01650 -6.0 -9.5 methylmalonyl-CoA mutase small subunit compare
ABI39_RS12425 -6.0 -7.1 acyl-CoA carboxylase subunit beta compare
ABI39_RS00195 -6.0 -13.2 MFS transporter compare
ABI39_RS21075 -6.0 -4.4 tryptophan synthase subunit alpha compare
ABI39_RS08195 -5.9 -5.6 hypothetical protein compare
ABI39_RS16910 -5.8 -9.7 3-phosphoglycerate dehydrogenase compare
ABI39_RS21050 -5.8 -7.2 anthranilate synthase component I family protein compare
ABI39_RS11840 -5.8 -3.9 histidinol-phosphate transaminase compare
ABI39_RS00185 -5.8 -8.6 glycoside hydrolase family 43 protein compare
ABI39_RS04685 -5.8 -5.6 acetylglutamate kinase compare
ABI39_RS12720 -5.7 -14.6 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS21045 -5.7 -5.7 tryptophan synthase subunit beta compare
ABI39_RS00475 -5.6 -4.7 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS06995 -5.6 -8.5 tetratricopeptide repeat protein compare
ABI39_RS10200 -5.6 -12.3 3-isopropylmalate dehydratase large subunit compare
ABI39_RS17420 -5.6 -8.6 serine hydroxymethyltransferase compare
ABI39_RS10500 -5.6 -3.8 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS00170 -5.6 -8.4 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS08850 -5.5 -3.5 toprim domain-containing protein compare
ABI39_RS11835 -5.5 -5.3 histidinol dehydrogenase compare
ABI39_RS14560 -5.4 -2.6 aspartate 1-decarboxylase compare
ABI39_RS19935 -5.4 -7.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS08305 -5.4 -7.7 DUF4831 family protein compare
ABI39_RS06380 -5.4 -7.3 GH3 auxin-responsive promoter family protein compare
ABI39_RS06670 -5.4 -12.9 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS20080 -5.4 -7.1 electron transport complex subunit RsxA compare
ABI39_RS12420 -5.3 -6.0 OadG family protein compare
ABI39_RS06675 -5.3 -6.0 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS20105 -5.3 -5.7 Fe-S cluster domain-containing protein compare
ABI39_RS18330 -5.3 -11.6 PD40 domain-containing protein compare
ABI39_RS00175 -5.3 -11.8 TonB-dependent receptor compare
ABI39_RS02290 -5.2 -2.5 hypothetical protein compare
ABI39_RS10110 -5.2 -13.9 S9 family peptidase compare
ABI39_RS01655 -5.2 -9.2 methylmalonyl-CoA mutase compare
ABI39_RS00165 -5.2 -16.5 response regulator compare
ABI39_RS01360 -5.1 -7.8 hypothetical protein compare
ABI39_RS11845 -5.0 -8.3 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS12770 -5.0 -2.8 hypothetical protein compare
ABI39_RS11405 -5.0 -10.3 hypothetical protein compare
ABI39_RS19950 -4.9 -3.4 diaminopimelate decarboxylase compare
ABI39_RS14030 -4.8 -4.0 MFS transporter compare
ABI39_RS00405 -4.8 -16.0 phosphoribosylformylglycinamidine synthase compare
ABI39_RS14465 -4.8 -7.4 hypothetical protein compare
ABI39_RS15275 -4.8 -13.6 mannonate dehydratase compare
ABI39_RS08185 -4.8 -5.8 hemolysin III family protein compare
ABI39_RS09830 -4.8 -6.7 methylmalonyl Co-A mutase-associated GTPase MeaB compare
ABI39_RS20355 -4.8 -12.8 carboxypeptidase-like regulatory domain-containing protein compare
ABI39_RS10215 -4.7 -8.0 3-isopropylmalate dehydrogenase compare
ABI39_RS20090 -4.6 -8.3 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS20095 -4.6 -9.4 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS09685 -4.6 -2.0 hypothetical protein compare
ABI39_RS00205 -4.6 -3.2 phosphoglucosamine mutase compare
ABI39_RS19385 -4.5 -2.7 hypothetical protein compare
ABI39_RS00190 -4.5 -7.8 endo-1,4-beta-xylanase compare
ABI39_RS18740 -4.4 -4.3 ATP-binding protein compare
ABI39_RS09515 -4.4 -4.0 nucleoside deaminase compare
ABI39_RS20070 -4.4 -8.8 UDP-glucose 4-epimerase GalE compare
ABI39_RS15320 -4.3 -12.2 PorT family protein compare
ABI39_RS10195 -4.3 -8.6 2-isopropylmalate synthase compare
ABI39_RS01415 -4.3 -2.7 branched-chain amino acid aminotransferase compare
ABI39_RS09245 -4.2 -12.1 cardiolipin synthase compare
ABI39_RS09845 -4.2 -2.6 (d)CMP kinase compare
ABI39_RS13185 -4.1 -1.5 manganese efflux pump compare
ABI39_RS12430 -4.1 -0.9 methylmalonyl-CoA epimerase compare
ABI39_RS04795 -4.1 -1.5 M28 family peptidase compare
ABI39_RS09850 -4.1 -4.9 energy transducer TonB compare
ABI39_RS20085 -4.0 -5.2 electron transport complex subunit E compare
ABI39_RS14715 -4.0 -5.3 RidA family protein compare
ABI39_RS16875 -4.0 -2.7 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS17950 -4.0 -2.1 Crp/Fnr family transcriptional regulator compare
ABI39_RS15410 -3.9 -5.5 DUF4296 domain-containing protein compare
ABI39_RS18745 -3.9 -2.7 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS15375 -3.9 -10.4 sugar kinase compare
ABI39_RS15670 -3.8 -9.6 cobalamin biosynthesis protein CobD compare
ABI39_RS11485 -3.7 -4.0 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS15415 -3.7 -4.7 hypothetical protein compare
ABI39_RS15665 -3.7 -5.6 pyridoxal phosphate-dependent class II aminotransferase compare
ABI39_RS11545 -3.7 -10.5 hypothetical protein compare
ABI39_RS21350 -3.6 -2.2 aspartate--ammonia ligase compare
ABI39_RS17175 -3.6 -4.9 tetratricopeptide repeat protein compare
ABI39_RS03320 -3.6 -7.2 FecR domain-containing protein compare
ABI39_RS00090 -3.5 -5.3 HAMP domain-containing histidine kinase compare
ABI39_RS15380 -3.5 -2.4 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
ABI39_RS16885 -3.5 -2.5 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS17130 -3.4 -1.0 HU family DNA-binding protein compare
ABI39_RS00770 -3.4 -11.9 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS04700 -3.4 -3.3 type I DNA topoisomerase compare
ABI39_RS09770 -3.4 -5.0 DUF349 domain-containing protein compare
ABI39_RS10650 -3.3 -12.6 AraC family transcriptional regulator compare
ABI39_RS02470 -3.3 -5.7 ATP-dependent DNA helicase RecG compare
ABI39_RS02285 -3.3 -3.2 DNA mismatch repair endonuclease MutL compare
ABI39_RS17140 -3.3 -1.9 AAA family ATPase compare
ABI39_RS13180 -3.3 -2.2 FAD:protein FMN transferase compare
ABI39_RS16870 -3.3 -3.6 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS09575 -3.2 -2.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS08135 -3.2 -2.2 YicC family protein compare
ABI39_RS13835 -3.2 -3.0 DUF3037 domain-containing protein compare
ABI39_RS16895 -3.2 -3.6 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS04280 -3.2 -5.0 DUF4292 domain-containing protein compare
ABI39_RS12955 -3.2 -6.3 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS00515 -3.1 -2.8 hypothetical protein compare
ABI39_RS15495 -3.1 -8.9 ABC transporter substrate-binding protein compare
ABI39_RS16880 -3.1 -2.9 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS17335 -3.1 -11.6 phosphatidylinositol-4-phosphate 5-kinase compare
ABI39_RS06220 -3.1 -10.4 glycosyltransferase family 2 protein compare
ABI39_RS02965 -3.0 -12.7 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS20930 -3.0 -12.6 tetratricopeptide repeat protein compare
ABI39_RS17195 -3.0 -9.2 hypothetical protein compare
ABI39_RS15650 -3.0 -7.6 cobyrinate a,c-diamide synthase compare
ABI39_RS16460 -3.0 -7.8 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
ABI39_RS06115 -3.0 -8.0 phosphatase PAP2 family protein compare
ABI39_RS00180 -2.8 -4.4 glycoside hydrolase family 43 protein compare
ABI39_RS15505 -2.8 -5.1 ABC transporter ATP-binding protein compare
ABI39_RS05280 -2.8 -8.3 S41 family peptidase compare
ABI39_RS20455 -2.8 -4.0 NUDIX hydrolase compare
ABI39_RS06235 -2.8 -5.2 UDP-galactopyranose mutase compare
ABI39_RS16695 -2.7 -8.9 carbon-nitrogen hydrolase compare
ABI39_RS12755 -2.7 -1.9 SurA N-terminal domain-containing protein compare
ABI39_RS11505 -2.7 -1.0 YccF domain-containing protein compare
ABI39_RS10870 -2.7 -9.6 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS20965 -2.7 -1.5 SPOR domain-containing protein compare
ABI39_RS15500 -2.7 -5.6 iron ABC transporter permease compare
ABI39_RS06250 -2.7 -12.6 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS22955 -2.7 -2.5 hypothetical protein compare
ABI39_RS04690 -2.7 -7.1 biosynthetic arginine decarboxylase compare
ABI39_RS15515 -2.7 -8.2 precorrin-4 C(11)-methyltransferase compare
ABI39_RS13170 -2.7 -11.4 Crp/Fnr family transcriptional regulator compare
ABI39_RS15490 -2.7 -7.9 precorrin-2 C(20)-methyltransferase compare
ABI39_RS17180 -2.7 -6.5 phosphatase PAP2 family protein compare
ABI39_RS07090 -2.6 -1.3 hypothetical protein compare
ABI39_RS17170 -2.6 -1.7 protein BatD compare
ABI39_RS02755 -2.6 -1.7 glycosyltransferase compare
ABI39_RS02500 -2.6 -8.2 pyridoxine 5'-phosphate synthase compare
ABI39_RS06440 -2.6 -0.9 hypothetical protein compare
ABI39_RS21185 -2.6 -9.1 ROK family transcriptional regulator compare
ABI39_RS11650 -2.5 -7.0 galactokinase compare
ABI39_RS16455 -2.5 -8.9 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
ABI39_RS04930 -2.5 -4.0 helix-turn-helix transcriptional regulator compare
ABI39_RS17160 -2.5 -1.7 VWA domain-containing protein compare
ABI39_RS10085 -2.5 -3.7 enoyl-ACP reductase compare
ABI39_RS02125 -2.5 -1.2 hypothetical protein compare
ABI39_RS08035 -2.5 -3.2 adenylosuccinate lyase compare
ABI39_RS20395 -2.5 -2.6 DedA family protein compare
ABI39_RS17150 -2.4 -4.2 hypothetical protein compare
ABI39_RS19985 -2.4 -1.4 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS15660 -2.4 -7.2 cobyric acid synthase compare
ABI39_RS17745 -2.4 -1.4 sulfur carrier protein ThiS compare
ABI39_RS10090 -2.4 -9.9 hypothetical protein compare
ABI39_RS15510 -2.4 -4.0 cobalt-precorrin-5B (C(1))-methyltransferase compare
ABI39_RS16450 -2.3 -4.7 adenosylcobinamide-GDP ribazoletransferase compare
ABI39_RS10160 -2.3 -6.5 FecR domain-containing protein compare
ABI39_RS19945 -2.3 -6.1 aspartate kinase compare
ABI39_RS15525 -2.3 -4.9 precorrin-3B C(17)-methyltransferase compare
ABI39_RS18300 -2.3 -6.1 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
ABI39_RS04675 -2.3 -1.2 hypothetical protein compare
ABI39_RS18910 -2.3 -2.0 preprotein translocase subunit YajC compare
ABI39_RS19075 -2.2 -2.4 hypothetical protein compare
ABI39_RS00410 -2.2 -3.9 response regulator compare
ABI39_RS09855 -2.2 -2.9 polyprenyl synthetase family protein compare
ABI39_RS14245 -2.2 -10.7 adenosylmethionine--8-amino-7-oxononanoate transaminase compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source Xylan from Beechwood; autoclaved in Phocaeicola dorei CL03T12C01

For carbon source Xylan from Beechwood; autoclaved across organisms