Experiment set3S302 for Phocaeicola dorei CL03T12C01

Compare to:

Starch soluble; autoclaved 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS07005 -9.3 -4.7 type II 3-dehydroquinate dehydratase compare
ABI39_RS04685 -7.9 -6.6 acetylglutamate kinase compare
ABI39_RS10205 -7.8 -5.6 3-isopropylmalate dehydratase small subunit compare
ABI39_RS02975 -7.6 -9.1 argininosuccinate synthase compare
ABI39_RS02875 -7.5 -10.3 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS02960 -7.5 -11.5 pyrroline-5-carboxylate reductase compare
ABI39_RS10440 -7.4 -8.0 threonine synthase compare
ABI39_RS19930 -7.3 -4.8 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS02970 -7.3 -8.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS10640 -7.3 -8.7 serine dehydratase subunit alpha family protein compare
ABI39_RS05660 -7.2 -7.0 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS10215 -7.2 -11.8 3-isopropylmalate dehydrogenase compare
ABI39_RS21075 -7.0 -5.3 tryptophan synthase subunit alpha compare
ABI39_RS02980 -7.0 -8.4 N-acetyltransferase compare
ABI39_RS16910 -7.0 -9.6 3-phosphoglycerate dehydrogenase compare
ABI39_RS04425 -7.0 -16.3 hypothetical protein compare
ABI39_RS07790 -7.0 -7.9 M20 family metallo-hydrolase compare
ABI39_RS07095 -6.8 -21.5 argininosuccinate lyase compare
ABI39_RS19920 -6.6 -8.3 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS02870 -6.6 -7.6 acetylornithine carbamoyltransferase compare
ABI39_RS12645 -6.5 -16.4 chorismate synthase compare
ABI39_RS04460 -6.5 -17.2 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS12720 -6.5 -11.6 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS10505 -6.4 -11.5 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS10200 -6.4 -16.6 3-isopropylmalate dehydratase large subunit compare
ABI39_RS12715 -6.2 -11.8 dihydroxy-acid dehydratase compare
ABI39_RS10435 -6.1 -9.8 cofactor-independent phosphoglycerate mutase compare
ABI39_RS19925 -6.1 -7.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS11830 -6.1 -3.8 ATP phosphoribosyltransferase compare
ABI39_RS06670 -6.1 -13.6 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS12735 -6.1 -9.3 ketol-acid reductoisomerase compare
ABI39_RS04455 -6.0 -19.1 TonB-dependent receptor compare
ABI39_RS02880 -6.0 -10.0 glutamate 5-kinase compare
ABI39_RS10495 -5.9 -8.1 prephenate dehydrogenase compare
ABI39_RS16905 -5.8 -13.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS11840 -5.8 -4.0 histidinol-phosphate transaminase compare
ABI39_RS19935 -5.7 -8.7 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS21065 -5.6 -7.3 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS05175 -5.6 -5.6 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS21045 -5.5 -6.6 tryptophan synthase subunit beta compare
ABI39_RS21050 -5.5 -7.3 anthranilate synthase component I family protein compare
ABI39_RS11845 -5.5 -6.5 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS04695 -5.5 -6.6 shikimate kinase compare
ABI39_RS10510 -5.4 -8.3 prephenate dehydratase compare
ABI39_RS10430 -5.4 -16.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS10195 -5.4 -7.7 2-isopropylmalate synthase compare
ABI39_RS06675 -5.3 -7.0 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS02965 -5.3 -10.6 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS21060 -5.3 -10.1 anthranilate phosphoribosyltransferase compare
ABI39_RS06380 -5.2 -9.4 GH3 auxin-responsive promoter family protein compare
ABI39_RS11835 -5.1 -6.1 histidinol dehydrogenase compare
ABI39_RS19385 -5.1 -2.7 hypothetical protein compare
ABI39_RS17420 -5.1 -9.0 serine hydroxymethyltransferase compare
ABI39_RS12665 -5.1 -8.2 shikimate dehydrogenase compare
ABI39_RS00770 -5.0 -14.1 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS10210 -5.0 -11.7 2-isopropylmalate synthase compare
ABI39_RS12770 -4.8 -3.0 hypothetical protein compare
ABI39_RS19950 -4.8 -3.3 diaminopimelate decarboxylase compare
ABI39_RS09685 -4.7 -2.2 hypothetical protein compare
ABI39_RS02290 -4.7 -3.3 hypothetical protein compare
ABI39_RS00475 -4.6 -4.6 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS06055 -4.6 -10.1 phosphoribosylamine--glycine ligase compare
ABI39_RS10260 -4.6 -9.7 adenylosuccinate synthase compare
ABI39_RS06250 -4.5 -11.0 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS02315 -4.5 -11.2 IMP dehydrogenase compare
ABI39_RS00405 -4.4 -22.9 phosphoribosylformylglycinamidine synthase compare
ABI39_RS12675 -4.3 -5.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS01415 -4.3 -2.9 branched-chain amino acid aminotransferase compare
ABI39_RS10500 -4.2 -5.2 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS12955 -4.1 -7.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS04795 -4.1 -1.7 M28 family peptidase compare
ABI39_RS04245 -4.1 -1.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS15410 -4.1 -7.5 DUF4296 domain-containing protein compare
ABI39_RS04860 -4.1 -3.2 HigA family addiction module antidote protein compare
ABI39_RS10650 -4.0 -15.3 AraC family transcriptional regulator compare
ABI39_RS04430 -4.0 -12.6 glycoside hydrolase family 13 protein compare
ABI39_RS04280 -3.9 -5.3 DUF4292 domain-containing protein compare
ABI39_RS02500 -3.9 -10.0 pyridoxine 5'-phosphate synthase compare
ABI39_RS17950 -3.9 -2.2 Crp/Fnr family transcriptional regulator compare
ABI39_RS14560 -3.8 -3.0 aspartate 1-decarboxylase compare
ABI39_RS09845 -3.8 -3.5 (d)CMP kinase compare
ABI39_RS00515 -3.7 -3.6 hypothetical protein compare
ABI39_RS11405 -3.7 -11.9 hypothetical protein compare
ABI39_RS18745 -3.7 -4.3 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS07090 -3.6 -2.8 hypothetical protein compare
ABI39_RS10870 -3.6 -11.8 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS12725 -3.6 -5.8 acetolactate synthase small subunit compare
ABI39_RS05450 -3.6 -4.9 redox-regulated ATPase YchF compare
ABI39_RS00205 -3.5 -4.8 phosphoglucosamine mutase compare
ABI39_RS21350 -3.5 -2.3 aspartate--ammonia ligase compare
ABI39_RS16895 -3.5 -3.4 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS19945 -3.4 -11.0 aspartate kinase compare
ABI39_RS09850 -3.4 -5.2 energy transducer TonB compare
ABI39_RS09575 -3.3 -2.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS09515 -3.3 -4.4 nucleoside deaminase compare
ABI39_RS17175 -3.3 -4.4 tetratricopeptide repeat protein compare
ABI39_RS19985 -3.3 -2.0 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS01360 -3.2 -9.4 hypothetical protein compare
ABI39_RS16315 -3.2 -1.1 conjugative transposon protein TraK compare
ABI39_RS06010 -3.2 -7.7 polysaccharide deacetylase family protein compare
ABI39_RS04505 -3.2 -5.0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS10110 -3.2 -14.4 S9 family peptidase compare
ABI39_RS08305 -3.1 -8.1 DUF4831 family protein compare
ABI39_RS20355 -3.0 -12.8 carboxypeptidase-like regulatory domain-containing protein compare
ABI39_RS04885 -3.0 -2.9 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS04145 -3.0 -1.6 transcription elongation factor GreA compare
ABI39_RS04700 -3.0 -4.8 type I DNA topoisomerase compare
ABI39_RS18330 -3.0 -10.8 PD40 domain-containing protein compare
ABI39_RS13185 -2.9 -1.6 manganese efflux pump compare
ABI39_RS21055 -2.9 -3.0 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS06920 -2.9 -5.3 glycosyltransferase compare
ABI39_RS06995 -2.9 -7.1 tetratricopeptide repeat protein compare
ABI39_RS00210 -2.9 -3.8 DUF4827 domain-containing protein compare
ABI39_RS16885 -2.8 -2.7 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS17195 -2.7 -10.7 hypothetical protein compare
ABI39_RS17640 -2.7 -6.1 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS02755 -2.6 -1.8 glycosyltransferase compare
ABI39_RS20930 -2.6 -15.3 tetratricopeptide repeat protein compare
ABI39_RS12970 -2.6 -7.0 CDP-alcohol phosphatidyltransferase family protein compare
ABI39_RS09855 -2.6 -2.5 polyprenyl synthetase family protein compare
ABI39_RS08035 -2.6 -2.5 adenylosuccinate lyase compare
ABI39_RS15320 -2.5 -14.3 PorT family protein compare
ABI39_RS17170 -2.5 -1.7 protein BatD compare
ABI39_RS13410 -2.5 -2.8 HU family DNA-binding protein compare
ABI39_RS15265 -2.5 -2.8 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS04930 -2.4 -3.9 helix-turn-helix transcriptional regulator compare
ABI39_RS17945 -2.4 -12.1 glutamine synthetase III compare
ABI39_RS08195 -2.4 -6.4 hypothetical protein compare
ABI39_RS17140 -2.4 -2.3 AAA family ATPase compare
ABI39_RS17160 -2.4 -1.6 VWA domain-containing protein compare
ABI39_RS12670 -2.3 -4.3 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
ABI39_RS09245 -2.3 -11.1 cardiolipin synthase compare
ABI39_RS11485 -2.2 -4.0 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS17745 -2.2 -1.8 sulfur carrier protein ThiS compare
ABI39_RS20395 -2.2 -2.9 DedA family protein compare
ABI39_RS16705 -2.1 -14.7 translocation/assembly module TamB compare
ABI39_RS01300 -2.1 -7.4 NADP-specific glutamate dehydrogenase compare
ABI39_RS02470 -2.1 -5.4 ATP-dependent DNA helicase RecG compare
ABI39_RS10085 -2.1 -3.9 enoyl-ACP reductase compare
ABI39_RS01650 -2.1 -7.0 methylmalonyl-CoA mutase small subunit compare
ABI39_RS15425 -2.0 -12.8 BamA/TamA family outer membrane protein compare
ABI39_RS04690 -2.0 -4.4 biosynthetic arginine decarboxylase compare
ABI39_RS02480 -2.0 -3.5 DJ-1/PfpI family protein compare
ABI39_RS16130 -2.0 -1.8 DUF3945 domain-containing protein compare
ABI39_RS17180 -2.0 -8.6 phosphatase PAP2 family protein compare
ABI39_RS04970 -2.0 -5.0 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS06115 -2.0 -8.4 phosphatase PAP2 family protein compare
ABI39_RS05280 -2.0 -11.2 S41 family peptidase compare
ABI39_RS22955 -2.0 -2.6 hypothetical protein compare
ABI39_RS12755 -1.9 -2.8 SurA N-terminal domain-containing protein compare
ABI39_RS15400 -1.9 -6.4 TraR/DksA C4-type zinc finger protein compare
ABI39_RS20405 -1.9 -4.0 GDP-L-fucose synthase compare
ABI39_RS04475 -1.9 -12.3 alpha-amylase compare
ABI39_RS13180 -1.9 -3.3 FAD:protein FMN transferase compare
ABI39_RS16875 -1.9 -2.8 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS16870 -1.9 -2.8 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS06235 -1.8 -6.6 UDP-galactopyranose mutase compare
ABI39_RS15415 -1.8 -4.1 hypothetical protein compare
ABI39_RS20070 -1.8 -6.6 UDP-glucose 4-epimerase GalE compare
ABI39_RS13000 -1.8 -5.5 sigma-54-dependent Fis family transcriptional regulator compare
ABI39_RS17150 -1.8 -3.5 hypothetical protein compare
ABI39_RS13845 -1.8 -0.8 histone H1 compare
ABI39_RS14255 -1.8 -3.3 DUF452 family protein compare
ABI39_RS17750 -1.8 -4.3 thiamine phosphate synthase compare
ABI39_RS04230 -1.8 -6.0 RNA polymerase factor sigma-54 compare
ABI39_RS17755 -1.8 -3.2 thiazole synthase compare
ABI39_RS15610 -1.8 -1.0 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS16880 -1.8 -3.1 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS12965 -1.8 -6.2 hypothetical protein compare
ABI39_RS03880 -1.8 -10.5 PDZ domain-containing protein compare
ABI39_RS12945 -1.8 -5.0 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABI39_RS17205 -1.8 -2.5 ATP-dependent Clp protease ATP-binding subunit compare
ABI39_RS06925 -1.7 -7.5 glycosyltransferase compare
ABI39_RS07815 -1.7 -3.9 RNA polymerase sigma factor compare
ABI39_RS14250 -1.7 -7.2 8-amino-7-oxononanoate synthase compare
ABI39_RS01655 -1.7 -10.1 methylmalonyl-CoA mutase compare
ABI39_RS04285 -1.7 -9.3 tetratricopeptide repeat protein compare
ABI39_RS17310 -1.7 -8.5 hypothetical protein compare
ABI39_RS12565 -1.7 -4.9 hypothetical protein compare
ABI39_RS17770 -1.7 -4.5 flavodoxin family protein compare
ABI39_RS14240 -1.7 -4.0 biotin synthase BioB compare
ABI39_RS22225 -1.7 -1.1 hypothetical protein compare
ABI39_RS16515 -1.7 -1.7 tRNA guanosine(34) transglycosylase Tgt compare
ABI39_RS00410 -1.6 -3.8 response regulator compare
ABI39_RS14235 -1.6 -2.3 hypothetical protein compare
ABI39_RS00760 -1.6 -1.4 YjgP/YjgQ family permease compare
ABI39_RS14245 -1.6 -9.8 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS20085 -1.6 -3.8 electron transport complex subunit E compare
ABI39_RS13170 -1.6 -9.3 Crp/Fnr family transcriptional regulator compare
ABI39_RS12560 -1.6 -8.6 GGGtGRT protein compare
ABI39_RS20410 -1.6 -3.3 GDP-mannose 4,6-dehydratase compare
ABI39_RS12415 -1.6 -3.5 biotin/lipoyl-binding protein compare
ABI39_RS12960 -1.6 -7.3 NDP-sugar synthase compare
ABI39_RS14000 -1.6 -4.4 hypothetical protein compare
ABI39_RS13990 -1.6 -5.6 hypothetical protein compare
ABI39_RS03320 -1.6 -6.9 FecR domain-containing protein compare
ABI39_RS05405 -1.6 -8.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABI39_RS16385 -1.6 -1.8 hypothetical protein compare
ABI39_RS14030 -1.6 -3.9 MFS transporter compare
ABI39_RS06990 -1.5 -7.7 DUF4369 domain-containing protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Starch soluble; autoclaved in Phocaeicola dorei CL03T12C01

For carbon source Starch soluble; autoclaved across organisms