Experiment set3S301 for Phocaeicola dorei CL03T12C01

Compare to:

Starch soluble; autoclaved 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS10205 -8.8 -4.5 3-isopropylmalate dehydratase small subunit compare
ABI39_RS02875 -8.6 -5.9 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS19925 -8.1 -4.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS02975 -8.0 -9.5 argininosuccinate synthase compare
ABI39_RS02970 -7.7 -7.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS10215 -7.6 -11.3 3-isopropylmalate dehydrogenase compare
ABI39_RS02960 -7.5 -11.4 pyrroline-5-carboxylate reductase compare
ABI39_RS07790 -7.5 -8.5 M20 family metallo-hydrolase compare
ABI39_RS02870 -7.5 -7.2 acetylornithine carbamoyltransferase compare
ABI39_RS10495 -7.4 -6.5 prephenate dehydrogenase compare
ABI39_RS04685 -7.4 -6.1 acetylglutamate kinase compare
ABI39_RS10435 -7.4 -8.8 cofactor-independent phosphoglycerate mutase compare
ABI39_RS10440 -7.1 -7.8 threonine synthase compare
ABI39_RS07095 -7.1 -20.9 argininosuccinate lyase compare
ABI39_RS12645 -7.0 -15.6 chorismate synthase compare
ABI39_RS12715 -6.9 -10.5 dihydroxy-acid dehydratase compare
ABI39_RS21075 -6.9 -4.7 tryptophan synthase subunit alpha compare
ABI39_RS12720 -6.8 -9.4 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS10510 -6.8 -9.7 prephenate dehydratase compare
ABI39_RS02980 -6.8 -9.0 N-acetyltransferase compare
ABI39_RS17420 -6.7 -8.0 serine hydroxymethyltransferase compare
ABI39_RS06675 -6.7 -7.9 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS10210 -6.6 -10.8 2-isopropylmalate synthase compare
ABI39_RS12675 -6.6 -4.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS04460 -6.5 -15.6 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS10200 -6.4 -13.5 3-isopropylmalate dehydratase large subunit compare
ABI39_RS12665 -6.4 -6.2 shikimate dehydrogenase compare
ABI39_RS16910 -6.3 -10.5 3-phosphoglycerate dehydrogenase compare
ABI39_RS02880 -6.3 -8.5 glutamate 5-kinase compare
ABI39_RS05660 -6.3 -8.6 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS00770 -6.3 -14.7 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS04455 -6.2 -19.6 TonB-dependent receptor compare
ABI39_RS04425 -6.2 -15.4 hypothetical protein compare
ABI39_RS11830 -6.1 -3.7 ATP phosphoribosyltransferase compare
ABI39_RS16905 -6.0 -12.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS07005 -6.0 -7.3 type II 3-dehydroquinate dehydratase compare
ABI39_RS21060 -6.0 -8.9 anthranilate phosphoribosyltransferase compare
ABI39_RS19930 -6.0 -5.3 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS10195 -6.0 -10.1 2-isopropylmalate synthase compare
ABI39_RS10640 -5.9 -11.3 serine dehydratase subunit alpha family protein compare
ABI39_RS21045 -5.9 -5.7 tryptophan synthase subunit beta compare
ABI39_RS06670 -5.8 -14.6 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS10430 -5.7 -16.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS12735 -5.7 -7.5 ketol-acid reductoisomerase compare
ABI39_RS21050 -5.6 -6.6 anthranilate synthase component I family protein compare
ABI39_RS10505 -5.6 -13.5 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS02315 -5.6 -11.3 IMP dehydrogenase compare
ABI39_RS19935 -5.5 -8.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS04695 -5.4 -6.1 shikimate kinase compare
ABI39_RS10260 -5.4 -10.5 adenylosuccinate synthase compare
ABI39_RS21065 -5.3 -6.7 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS11840 -5.3 -4.8 histidinol-phosphate transaminase compare
ABI39_RS11845 -5.2 -7.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS10870 -5.2 -10.0 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS12725 -5.2 -5.9 acetolactate synthase small subunit compare
ABI39_RS11835 -5.2 -6.1 histidinol dehydrogenase compare
ABI39_RS06250 -5.1 -13.4 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS02965 -5.1 -11.0 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS11405 -5.0 -12.6 hypothetical protein compare
ABI39_RS10500 -5.0 -4.8 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS00405 -5.0 -20.9 phosphoribosylformylglycinamidine synthase compare
ABI39_RS02500 -5.0 -8.3 pyridoxine 5'-phosphate synthase compare
ABI39_RS19985 -4.9 -1.9 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS09850 -4.9 -3.4 energy transducer TonB compare
ABI39_RS19950 -4.8 -3.3 diaminopimelate decarboxylase compare
ABI39_RS04430 -4.7 -14.5 glycoside hydrolase family 13 protein compare
ABI39_RS10650 -4.7 -13.9 AraC family transcriptional regulator compare
ABI39_RS09685 -4.6 -2.1 hypothetical protein compare
ABI39_RS00205 -4.6 -3.2 phosphoglucosamine mutase compare
ABI39_RS06380 -4.6 -10.6 GH3 auxin-responsive promoter family protein compare
ABI39_RS06055 -4.6 -7.4 phosphoribosylamine--glycine ligase compare
ABI39_RS02290 -4.5 -2.8 hypothetical protein compare
ABI39_RS04860 -4.5 -2.6 HigA family addiction module antidote protein compare
ABI39_RS04280 -4.5 -5.1 DUF4292 domain-containing protein compare
ABI39_RS06010 -4.4 -8.2 polysaccharide deacetylase family protein compare
ABI39_RS12770 -4.4 -3.7 hypothetical protein compare
ABI39_RS19920 -4.4 -7.9 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS15415 -4.3 -5.6 hypothetical protein compare
ABI39_RS02140 -4.3 -2.2 TetR/AcrR family transcriptional regulator compare
ABI39_RS01415 -4.3 -2.9 branched-chain amino acid aminotransferase compare
ABI39_RS19945 -4.3 -11.7 aspartate kinase compare
ABI39_RS06995 -4.2 -8.5 tetratricopeptide repeat protein compare
ABI39_RS09845 -4.2 -2.7 (d)CMP kinase compare
ABI39_RS14560 -4.2 -2.9 aspartate 1-decarboxylase compare
ABI39_RS01300 -4.1 -10.4 NADP-specific glutamate dehydrogenase compare
ABI39_RS00515 -4.1 -3.4 hypothetical protein compare
ABI39_RS04795 -4.1 -1.6 M28 family peptidase compare
ABI39_RS04245 -4.0 -1.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS00475 -4.0 -4.8 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS19385 -4.0 -3.1 hypothetical protein compare
ABI39_RS17950 -3.9 -2.2 Crp/Fnr family transcriptional regulator compare
ABI39_RS05175 -3.9 -6.0 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS01360 -3.8 -7.0 hypothetical protein compare
ABI39_RS05450 -3.8 -4.9 redox-regulated ATPase YchF compare
ABI39_RS20355 -3.8 -13.2 carboxypeptidase-like regulatory domain-containing protein compare
ABI39_RS10110 -3.8 -12.9 S9 family peptidase compare
ABI39_RS12955 -3.7 -8.3 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS17640 -3.7 -5.0 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS18745 -3.7 -4.3 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS17175 -3.6 -4.2 tetratricopeptide repeat protein compare
ABI39_RS21350 -3.6 -2.3 aspartate--ammonia ligase compare
ABI39_RS15410 -3.5 -6.4 DUF4296 domain-containing protein compare
ABI39_RS04505 -3.5 -6.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS07090 -3.5 -2.6 hypothetical protein compare
ABI39_RS08195 -3.4 -5.0 hypothetical protein compare
ABI39_RS08305 -3.4 -8.7 DUF4831 family protein compare
ABI39_RS17195 -3.3 -12.9 hypothetical protein compare
ABI39_RS04700 -3.3 -3.2 type I DNA topoisomerase compare
ABI39_RS17945 -3.3 -14.3 glutamine synthetase III compare
ABI39_RS06920 -3.3 -4.7 glycosyltransferase compare
ABI39_RS15320 -3.3 -9.0 PorT family protein compare
ABI39_RS09575 -3.3 -2.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS16315 -3.3 -1.0 conjugative transposon protein TraK compare
ABI39_RS17140 -3.2 -1.9 AAA family ATPase compare
ABI39_RS04885 -3.1 -2.1 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS09245 -3.1 -13.0 cardiolipin synthase compare
ABI39_RS13185 -3.1 -1.6 manganese efflux pump compare
ABI39_RS20930 -3.1 -17.8 tetratricopeptide repeat protein compare
ABI39_RS18330 -3.1 -11.0 PD40 domain-containing protein compare
ABI39_RS04930 -3.0 -4.7 helix-turn-helix transcriptional regulator compare
ABI39_RS17150 -3.0 -2.9 hypothetical protein compare
ABI39_RS12970 -3.0 -9.2 CDP-alcohol phosphatidyltransferase family protein compare
ABI39_RS16885 -3.0 -2.5 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS09515 -2.8 -4.3 nucleoside deaminase compare
ABI39_RS20395 -2.8 -2.8 DedA family protein compare
ABI39_RS16305 -2.8 -0.9 DUF4141 domain-containing protein compare
ABI39_RS20220 -2.7 -2.6 DNA-binding protein compare
ABI39_RS20965 -2.7 -2.1 SPOR domain-containing protein compare
ABI39_RS00090 -2.7 -5.4 HAMP domain-containing histidine kinase compare
ABI39_RS20070 -2.7 -8.6 UDP-glucose 4-epimerase GalE compare
ABI39_RS02755 -2.6 -1.8 glycosyltransferase compare
ABI39_RS14250 -2.6 -9.3 8-amino-7-oxononanoate synthase compare
ABI39_RS04970 -2.6 -5.2 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS14235 -2.6 -2.6 hypothetical protein compare
ABI39_RS11545 -2.6 -9.4 hypothetical protein compare
ABI39_RS04690 -2.6 -6.8 biosynthetic arginine decarboxylase compare
ABI39_RS17320 -2.5 -2.4 YhcH/YjgK/YiaL family protein compare
ABI39_RS12965 -2.5 -8.4 hypothetical protein compare
ABI39_RS17170 -2.5 -1.7 protein BatD compare
ABI39_RS17750 -2.5 -3.8 thiamine phosphate synthase compare
ABI39_RS14265 -2.5 -7.8 ATP-dependent dethiobiotin synthetase BioD compare
ABI39_RS16880 -2.5 -3.3 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS16870 -2.4 -3.3 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS04475 -2.4 -16.4 alpha-amylase compare
ABI39_RS01650 -2.4 -8.6 methylmalonyl-CoA mutase small subunit compare
ABI39_RS06220 -2.4 -11.1 glycosyltransferase family 2 protein compare
ABI39_RS00210 -2.4 -3.9 DUF4827 domain-containing protein compare
ABI39_RS05280 -2.4 -13.8 S41 family peptidase compare
ABI39_RS12960 -2.4 -8.4 NDP-sugar synthase compare
ABI39_RS11140 -2.3 -1.0 undecaprenyl-phosphate glucose phosphotransferase compare
ABI39_RS14260 -2.3 -10.5 malonyl-ACP O-methyltransferase BioC compare
ABI39_RS00520 -2.3 -8.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABI39_RS14245 -2.3 -12.1 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS06235 -2.3 -6.6 UDP-galactopyranose mutase compare
ABI39_RS21055 -2.3 -3.1 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS12755 -2.3 -2.2 SurA N-terminal domain-containing protein compare
ABI39_RS12980 -2.3 -4.0 HAD family hydrolase compare
ABI39_RS06925 -2.3 -9.1 glycosyltransferase compare
ABI39_RS14030 -2.3 -3.2 MFS transporter compare
ABI39_RS12150 -2.3 -3.7 hotdog fold thioesterase compare
ABI39_RS13180 -2.2 -3.6 FAD:protein FMN transferase compare
ABI39_RS06115 -2.2 -9.1 phosphatase PAP2 family protein compare
ABI39_RS04145 -2.2 -1.5 transcription elongation factor GreA compare
ABI39_RS20405 -2.2 -4.7 GDP-L-fucose synthase compare
ABI39_RS12995 -2.2 -9.4 inositol-3-phosphate synthase compare
ABI39_RS16385 -2.2 -2.0 hypothetical protein compare
ABI39_RS20615 -2.2 -8.9 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
ABI39_RS07560 -2.1 -1.2 hypothetical protein compare
ABI39_RS08035 -2.1 -2.8 adenylosuccinate lyase compare
ABI39_RS17745 -2.1 -1.5 sulfur carrier protein ThiS compare
ABI39_RS17755 -2.1 -3.3 thiazole synthase compare
ABI39_RS03320 -2.1 -7.5 FecR domain-containing protein compare
ABI39_RS16515 -2.1 -2.6 tRNA guanosine(34) transglycosylase Tgt compare
ABI39_RS15400 -2.1 -8.5 TraR/DksA C4-type zinc finger protein compare
ABI39_RS03880 -2.1 -12.5 PDZ domain-containing protein compare
ABI39_RS13000 -2.1 -6.3 sigma-54-dependent Fis family transcriptional regulator compare
ABI39_RS11485 -2.1 -3.2 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS17780 -2.1 -8.7 HesA/MoeB/ThiF family protein compare
ABI39_RS17775 -2.1 -10.0 2-iminoacetate synthase ThiH compare
ABI39_RS01655 -2.1 -8.9 methylmalonyl-CoA mutase compare
ABI39_RS13170 -2.1 -8.7 Crp/Fnr family transcriptional regulator compare
ABI39_RS17160 -2.0 -1.9 VWA domain-containing protein compare
ABI39_RS13990 -2.0 -4.9 hypothetical protein compare
ABI39_RS06990 -2.0 -11.0 DUF4369 domain-containing protein compare
ABI39_RS20410 -2.0 -3.8 GDP-mannose 4,6-dehydratase compare
ABI39_RS04285 -2.0 -9.2 tetratricopeptide repeat protein compare
ABI39_RS15425 -2.0 -11.5 BamA/TamA family outer membrane protein compare
ABI39_RS15265 -2.0 -2.4 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS16320 -2.0 -1.2 DUF3989 domain-containing protein compare
ABI39_RS14240 -2.0 -3.2 biotin synthase BioB compare
ABI39_RS16895 -1.9 -2.8 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS14255 -1.9 -3.1 DUF452 family protein compare
ABI39_RS12560 -1.9 -9.1 GGGtGRT protein compare
ABI39_RS14465 -1.9 -6.4 hypothetical protein compare
ABI39_RS16705 -1.9 -12.0 translocation/assembly module TamB compare
ABI39_RS06935 -1.8 -6.3 hemolysin activation protein compare
ABI39_RS07815 -1.8 -2.8 RNA polymerase sigma factor compare
ABI39_RS17180 -1.8 -5.3 phosphatase PAP2 family protein compare
ABI39_RS12945 -1.8 -4.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABI39_RS17310 -1.8 -7.6 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Starch soluble; autoclaved in Phocaeicola dorei CL03T12C01

For carbon source Starch soluble; autoclaved across organisms