Experiment set3S300 for Phocaeicola dorei CL03T12C01

Compare to:

(+)-Arabinogalactan; autoclaved 5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS21075 -6.5 -7.7 tryptophan synthase subunit alpha compare
ABI39_RS07095 -6.2 -19.5 argininosuccinate lyase compare
ABI39_RS10495 -6.0 -9.6 prephenate dehydrogenase compare
ABI39_RS02875 -6.0 -12.8 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS21065 -5.8 -6.6 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS07790 -5.7 -9.0 M20 family metallo-hydrolase compare
ABI39_RS11835 -5.5 -5.3 histidinol dehydrogenase compare
ABI39_RS04695 -5.5 -8.4 shikimate kinase compare
ABI39_RS02975 -5.5 -10.4 argininosuccinate synthase compare
ABI39_RS02980 -5.2 -7.7 N-acetyltransferase compare
ABI39_RS10510 -5.2 -10.8 prephenate dehydratase compare
ABI39_RS02970 -5.1 -10.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS04685 -5.1 -8.7 acetylglutamate kinase compare
ABI39_RS02870 -5.0 -9.2 acetylornithine carbamoyltransferase compare
ABI39_RS11830 -4.9 -4.8 ATP phosphoribosyltransferase compare
ABI39_RS19925 -4.9 -6.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS19930 -4.9 -6.0 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS02315 -4.9 -10.4 IMP dehydrogenase compare
ABI39_RS21060 -4.8 -10.1 anthranilate phosphoribosyltransferase compare
ABI39_RS10500 -4.7 -5.6 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS16910 -4.7 -12.1 3-phosphoglycerate dehydrogenase compare
ABI39_RS20070 -4.7 -8.4 UDP-glucose 4-epimerase GalE compare
ABI39_RS07005 -4.6 -8.6 type II 3-dehydroquinate dehydratase compare
ABI39_RS10440 -4.5 -6.8 threonine synthase compare
ABI39_RS19385 -4.5 -4.4 hypothetical protein compare
ABI39_RS10505 -4.5 -13.2 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS12735 -4.5 -11.1 ketol-acid reductoisomerase compare
ABI39_RS00405 -4.4 -19.6 phosphoribosylformylglycinamidine synthase compare
ABI39_RS00475 -4.4 -5.7 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS11845 -4.3 -9.2 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS11650 -4.3 -10.4 galactokinase compare
ABI39_RS02960 -4.3 -11.1 pyrroline-5-carboxylate reductase compare
ABI39_RS16905 -4.3 -11.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS21045 -4.2 -7.5 tryptophan synthase subunit beta compare
ABI39_RS02140 -4.2 -3.1 TetR/AcrR family transcriptional regulator compare
ABI39_RS10435 -4.2 -11.6 cofactor-independent phosphoglycerate mutase compare
ABI39_RS02880 -4.2 -10.6 glutamate 5-kinase compare
ABI39_RS00770 -4.2 -16.7 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS12720 -4.1 -11.7 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS10200 -4.1 -12.8 3-isopropylmalate dehydratase large subunit compare
ABI39_RS04795 -4.1 -2.5 M28 family peptidase compare
ABI39_RS12645 -4.0 -15.0 chorismate synthase compare
ABI39_RS06055 -4.0 -9.7 phosphoribosylamine--glycine ligase compare
ABI39_RS12715 -4.0 -11.9 dihydroxy-acid dehydratase compare
ABI39_RS12675 -3.9 -7.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS19935 -3.9 -8.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS12770 -3.9 -4.6 hypothetical protein compare
ABI39_RS15380 -3.9 -4.7 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
ABI39_RS10260 -3.9 -8.6 adenylosuccinate synthase compare
ABI39_RS01415 -3.9 -3.7 branched-chain amino acid aminotransferase compare
ABI39_RS10430 -3.8 -14.6 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS12665 -3.8 -9.1 shikimate dehydrogenase compare
ABI39_RS21050 -3.8 -6.9 anthranilate synthase component I family protein compare
ABI39_RS10205 -3.7 -8.2 3-isopropylmalate dehydratase small subunit compare
ABI39_RS09685 -3.6 -3.4 hypothetical protein compare
ABI39_RS06670 -3.6 -12.5 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS18745 -3.6 -4.9 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS05660 -3.5 -9.9 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS10215 -3.5 -9.9 3-isopropylmalate dehydrogenase compare
ABI39_RS06675 -3.5 -10.6 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS10640 -3.5 -12.1 serine dehydratase subunit alpha family protein compare
ABI39_RS10110 -3.5 -13.1 S9 family peptidase compare
ABI39_RS00205 -3.4 -4.1 phosphoglucosamine mutase compare
ABI39_RS11840 -3.3 -5.5 histidinol-phosphate transaminase compare
ABI39_RS04245 -3.3 -2.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS17140 -3.3 -2.2 AAA family ATPase compare
ABI39_RS19985 -3.2 -2.6 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS17950 -3.2 -3.1 Crp/Fnr family transcriptional regulator compare
ABI39_RS06995 -3.2 -9.6 tetratricopeptide repeat protein compare
ABI39_RS19950 -3.2 -5.7 diaminopimelate decarboxylase compare
ABI39_RS08195 -3.2 -4.7 hypothetical protein compare
ABI39_RS08305 -3.1 -8.0 DUF4831 family protein compare
ABI39_RS01360 -3.1 -6.9 hypothetical protein compare
ABI39_RS10195 -3.1 -7.4 2-isopropylmalate synthase compare
ABI39_RS13185 -3.1 -2.3 manganese efflux pump compare
ABI39_RS17420 -3.0 -10.5 serine hydroxymethyltransferase compare
ABI39_RS21350 -3.0 -2.8 aspartate--ammonia ligase compare
ABI39_RS18330 -2.9 -9.3 PD40 domain-containing protein compare
ABI39_RS02290 -2.9 -4.8 hypothetical protein compare
ABI39_RS04700 -2.9 -4.4 type I DNA topoisomerase compare
ABI39_RS02965 -2.9 -13.0 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS09850 -2.8 -5.0 energy transducer TonB compare
ABI39_RS17195 -2.8 -10.5 hypothetical protein compare
ABI39_RS11405 -2.7 -10.7 hypothetical protein compare
ABI39_RS09575 -2.7 -3.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS08185 -2.7 -6.8 hemolysin III family protein compare
ABI39_RS17175 -2.7 -5.6 tetratricopeptide repeat protein compare
ABI39_RS06010 -2.7 -7.9 polysaccharide deacetylase family protein compare
ABI39_RS17170 -2.7 -1.8 protein BatD compare
ABI39_RS09855 -2.6 -2.5 polyprenyl synthetase family protein compare
ABI39_RS19920 -2.6 -4.7 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS04885 -2.4 -3.5 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS10870 -2.4 -10.6 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS04280 -2.3 -4.8 DUF4292 domain-containing protein compare
ABI39_RS07090 -2.3 -1.5 hypothetical protein compare
ABI39_RS01300 -2.3 -11.0 NADP-specific glutamate dehydrogenase compare
ABI39_RS19945 -2.3 -9.0 aspartate kinase compare
ABI39_RS14465 -2.3 -9.5 hypothetical protein compare
ABI39_RS00515 -2.3 -3.0 hypothetical protein compare
ABI39_RS04690 -2.3 -7.1 biosynthetic arginine decarboxylase compare
ABI39_RS02755 -2.2 -2.6 glycosyltransferase compare
ABI39_RS10210 -2.2 -7.7 2-isopropylmalate synthase compare
ABI39_RS05175 -2.1 -5.6 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS17160 -2.1 -2.0 VWA domain-containing protein compare
ABI39_RS02500 -2.1 -8.5 pyridoxine 5'-phosphate synthase compare
ABI39_RS09845 -2.1 -2.8 (d)CMP kinase compare
ABI39_RS12425 -2.1 -8.4 acyl-CoA carboxylase subunit beta compare
ABI39_RS08035 -2.1 -3.1 adenylosuccinate lyase compare
ABI39_RS09195 -2.0 -2.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS22820 -2.0 -1.2 hypothetical protein compare
ABI39_RS09245 -2.0 -12.0 cardiolipin synthase compare
ABI39_RS17150 -1.9 -4.1 hypothetical protein compare
ABI39_RS06380 -1.9 -8.3 GH3 auxin-responsive promoter family protein compare
ABI39_RS14030 -1.9 -3.8 MFS transporter compare
ABI39_RS15415 -1.8 -6.2 hypothetical protein compare
ABI39_RS12955 -1.8 -6.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS19615 -1.8 -2.0 hypothetical protein compare
ABI39_RS11630 -1.8 -3.3 L-ribulose-5-phosphate 4-epimerase compare
ABI39_RS04860 -1.8 -2.7 HigA family addiction module antidote protein compare
ABI39_RS11505 -1.7 -1.3 YccF domain-containing protein compare
ABI39_RS02655 -1.7 -10.3 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS06250 -1.7 -11.6 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS02355 -1.7 -6.7 ABC transporter ATP-binding protein compare
ABI39_RS02350 -1.7 -6.0 ABC transporter permease compare
ABI39_RS06115 -1.7 -7.4 phosphatase PAP2 family protein compare
ABI39_RS15410 -1.6 -7.1 DUF4296 domain-containing protein compare
ABI39_RS12755 -1.6 -2.8 SurA N-terminal domain-containing protein compare
ABI39_RS21055 -1.6 -3.5 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS12420 -1.6 -5.8 OadG family protein compare
ABI39_RS13910 -1.6 -1.3 chaperone modulator CbpM compare
ABI39_RS20080 -1.6 -4.8 electron transport complex subunit RsxA compare
ABI39_RS15375 -1.6 -8.5 sugar kinase compare
ABI39_RS12415 -1.6 -4.2 biotin/lipoyl-binding protein compare
ABI39_RS18740 -1.5 -5.2 ATP-binding protein compare
ABI39_RS12150 -1.5 -5.3 hotdog fold thioesterase compare
ABI39_RS08135 -1.5 -1.7 YicC family protein compare
ABI39_RS14560 -1.5 -2.7 aspartate 1-decarboxylase compare
ABI39_RS11660 -1.4 -5.2 galactose mutarotase compare
ABI39_RS20965 -1.4 -2.3 SPOR domain-containing protein compare
ABI39_RS08900 -1.4 -1.4 hypothetical protein compare
ABI39_RS15320 -1.4 -8.0 PorT family protein compare
ABI39_RS03625 -1.4 -5.1 type I methionyl aminopeptidase compare
ABI39_RS01655 -1.4 -6.7 methylmalonyl-CoA mutase compare
ABI39_RS13180 -1.4 -3.1 FAD:protein FMN transferase compare
ABI39_RS15425 -1.3 -9.4 BamA/TamA family outer membrane protein compare
ABI39_RS17945 -1.3 -8.1 glutamine synthetase III compare
ABI39_RS04930 -1.3 -4.6 helix-turn-helix transcriptional regulator compare
ABI39_RS11655 -1.3 -1.2 MFS transporter compare
ABI39_RS16705 -1.3 -10.2 translocation/assembly module TamB compare
ABI39_RS01650 -1.3 -6.0 methylmalonyl-CoA mutase small subunit compare
ABI39_RS19075 -1.3 -3.1 hypothetical protein compare
ABI39_RS20090 -1.3 -5.7 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS16320 -1.3 -1.5 DUF3989 domain-containing protein compare
ABI39_RS20085 -1.3 -3.9 electron transport complex subunit E compare
ABI39_RS07420 -1.2 -3.7 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS22955 -1.2 -2.8 hypothetical protein compare
ABI39_RS09230 -1.2 -2.0 hypothetical protein compare
ABI39_RS20095 -1.2 -5.5 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS11485 -1.2 -3.0 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS06925 -1.2 -6.5 glycosyltransferase compare
ABI39_RS15770 -1.2 -1.8 hypothetical protein compare
ABI39_RS06060 -1.2 -3.9 S9 family peptidase compare
ABI39_RS02660 -1.2 -7.8 TonB-dependent receptor compare
ABI39_RS05280 -1.2 -5.7 S41 family peptidase compare
ABI39_RS18660 -1.2 -1.3 Hsp20/alpha crystallin family protein compare
ABI39_RS18385 -1.2 -1.3 helix-turn-helix domain-containing protein compare
ABI39_RS06920 -1.2 -3.8 glycosyltransferase compare
ABI39_RS12805 -1.2 -2.8 hypothetical protein compare
ABI39_RS10650 -1.1 -6.6 AraC family transcriptional regulator compare
ABI39_RS14715 -1.1 -4.0 RidA family protein compare
ABI39_RS06580 -1.1 -8.6 glycoside hydrolase family 97 protein compare
ABI39_RS20355 -1.1 -8.1 carboxypeptidase-like regulatory domain-containing protein compare
ABI39_RS04145 -1.1 -1.3 transcription elongation factor GreA compare
ABI39_RS04505 -1.1 -3.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS00760 -1.1 -1.6 YjgP/YjgQ family permease compare
ABI39_RS21620 -1.1 -7.2 triose-phosphate isomerase compare
ABI39_RS17465 -1.1 -6.6 DUF3078 domain-containing protein compare
ABI39_RS00520 -1.1 -5.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABI39_RS16870 -1.1 -2.3 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS12725 -1.1 -3.7 acetolactate synthase small subunit compare
ABI39_RS17755 -1.0 -2.9 thiazole synthase compare
ABI39_RS16695 -1.0 -7.4 carbon-nitrogen hydrolase compare
ABI39_RS09795 -1.0 -2.4 nucleoside deaminase compare
ABI39_RS09515 -1.0 -2.0 nucleoside deaminase compare
ABI39_RS16040 -1.0 -0.8 hypothetical protein compare
ABI39_RS16895 -1.0 -2.4 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS20100 -1.0 -4.9 electron transport complex subunit RsxC compare
ABI39_RS06235 -1.0 -4.8 UDP-galactopyranose mutase compare
ABI39_RS08055 -1.0 -4.0 zeta toxin family protein compare
ABI39_RS16520 -1.0 -5.4 endopeptidase La compare
ABI39_RS20930 -1.0 -6.8 tetratricopeptide repeat protein compare
ABI39_RS11625 -1.0 -5.6 L-arabinose isomerase compare
ABI39_RS16130 -1.0 -1.8 DUF3945 domain-containing protein compare
ABI39_RS06220 -1.0 -6.1 glycosyltransferase family 2 protein compare
ABI39_RS20110 -0.9 -2.9 SoxR reducing system RseC family protein compare
ABI39_RS20105 -0.9 -4.1 Fe-S cluster domain-containing protein compare
ABI39_RS13795 -0.9 -3.0 hypothetical protein compare
ABI39_RS14085 -0.9 -1.0 hypothetical protein compare
ABI39_RS11645 -0.9 -4.1 galactose mutarotase compare
ABI39_RS14245 -0.9 -5.9 adenosylmethionine--8-amino-7-oxononanoate transaminase compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source (+)-Arabinogalactan; autoclaved in Phocaeicola dorei CL03T12C01

For carbon source (+)-Arabinogalactan; autoclaved across organisms