Experiment set3S299 for Escherichia coli ECOR27

Compare to:

K25

200 most important genes:

  gene name fitness t score description  
NOLOHH_23510 fur -5.3 -3.7 ferric iron uptake transcriptional regulator compare
NOLOHH_09835 obgE -5.3 -2.2 GTPase ObgE compare
NOLOHH_19100 narI -3.2 -2.3 respiratory nitrate reductase subunit gamma compare
NOLOHH_12800 ratA -3.2 -2.2 type II toxin-antitoxin system toxin RatA compare
NOLOHH_11230 tkt -3.2 -3.7 transketolase compare
NOLOHH_14300 usg -3.1 -5.8 aspartate-semialdehyde dehydrogenase compare
NOLOHH_18060 rsxD -3.0 -5.4 electron transport complex subunit RsxD compare
NOLOHH_20210 yciH -3.0 -1.7 stress response translation initiation inhibitor YciH compare
NOLOHH_04655 epmB -3.0 -2.0 EF-P beta-lysylation protein EpmB compare
NOLOHH_11365 rpiA -2.9 -3.5 ribose-5-phosphate isomerase RpiA compare
NOLOHH_06530 corA -2.9 -5.5 magnesium/cobalt transporter CorA compare
NOLOHH_19620 gp18 -2.9 -1.6 phage minor tail protein L compare
NOLOHH_12165 -2.7 -2.1 LemA family compare
NOLOHH_02580 glnD -2.7 -2.1 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
NOLOHH_07575 rfaF -2.6 -2.5 ADP-heptose--LPS heptosyltransferase RfaF compare
NOLOHH_13055 rseA -2.6 -2.5 anti-sigma-E factor RseA compare
NOLOHH_19420 ydbD -2.4 -2.4 Uncharacterized protein YdbD compare
NOLOHH_16015 pduF -2.3 -1.6 propanediol diffusion facilitator PduF compare
NOLOHH_02390 gmhB -2.3 -2.2 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
NOLOHH_20185 rnb -2.3 -3.8 exoribonuclease II compare
NOLOHH_14340 ubiX -2.2 -3.0 flavin prenyltransferase UbiX compare
NOLOHH_23480 pgm -2.2 -3.9 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
NOLOHH_11425 ubiI -2.2 -2.4 FAD-dependent 2-octaprenylphenol hydroxylase compare
NOLOHH_22695 ybhL -2.1 -3.2 Inhibitor of apoptosis-promoting Bax1 compare
NOLOHH_14460 nuoA -2.1 -3.0 NADH-quinone oxidoreductase subunit NuoA compare
NOLOHH_02690 dksA -2.0 -4.0 RNA polymerase-binding protein DksA compare
NOLOHH_13310 hscA -2.0 -3.3 Fe-S protein assembly chaperone HscA compare
NOLOHH_13300 iscA -2.0 -2.7 iron-sulfur cluster assembly protein IscA compare
NOLOHH_18620 ydfJ -2.0 -2.0 Putative transporter YdfJ compare
NOLOHH_01270 clpP -2.0 -3.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
NOLOHH_24240 -1.9 -1.6 transglycosylase SLT domain-containing protein compare
NOLOHH_19580 sitD -1.9 -1.7 iron/manganese ABC transporter permease subunit SitD compare
NOLOHH_00445 -1.9 -4.3 peptidyl-arginine deiminase compare
NOLOHH_20425 -1.9 -2.3 hypothetical protein compare
NOLOHH_18245 mlc -1.9 -2.1 DNA-binding transcriptional repressor Mlc compare
NOLOHH_14490 nuoH -1.9 -4.1 NADH-quinone oxidoreductase subunit NuoH compare
NOLOHH_00385 -1.8 -2.3 hypothetical protein compare
NOLOHH_05830 metJ -1.8 -1.9 met regulon transcriptional regulator MetJ compare
NOLOHH_20015 ycjW -1.8 -1.9 Uncharacterized HTH-type transcriptional regulator YcjW compare
NOLOHH_20200 yciT -1.8 -1.6 DNA-binding transcriptional regulator YciT compare
NOLOHH_18975 dppD -1.8 -3.2 ABC transporter ATP-binding protein compare
NOLOHH_05490 hupA -1.8 -1.8 DNA-binding protein HU-alpha compare
NOLOHH_20670 dhaL -1.8 -1.3 dihydroxyacetone kinase subunit DhaL compare
NOLOHH_20895 nudJ -1.8 -1.4 phosphatase NudJ compare
NOLOHH_03190 apaH -1.7 -7.0 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
NOLOHH_23255 tolQ -1.7 -1.9 Tol-Pal system protein TolQ compare
NOLOHH_07545 waaO -1.6 -4.1 lipopolysaccharide 3-alpha-galactosyltransferase compare
NOLOHH_15975 pduJ -1.6 -1.8 propanediol utilization microcompartment protein PduJ compare
NOLOHH_15920 eutP -1.6 -2.3 propanediol utilization protein compare
NOLOHH_18050 rsxE -1.6 -2.0 electron transport complex subunit RsxE compare
NOLOHH_19215 ydcY -1.6 -1.5 Uncharacterized protein YdcY compare
NOLOHH_09695 arcB -1.6 -4.8 aerobic respiration two-component sensor histidine kinase ArcB compare
NOLOHH_02185 ydcD -1.6 -1.1 Uncharacterized protein YdcD compare
NOLOHH_02845 aceE -1.6 -2.3 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
NOLOHH_21130 yceD -1.6 -2.6 23S rRNA accumulation protein YceD compare
NOLOHH_23865 -1.5 -1.6 hypothetical protein compare
NOLOHH_14470 nuoC -1.5 -5.4 NADH-quinone oxidoreductase subunit C/D compare
NOLOHH_14780 apbE -1.5 -3.5 FAD:protein FMN transferase ApbE compare
NOLOHH_13075 lepA -1.5 -4.0 translation elongation factor 4 compare
NOLOHH_23145 galE -1.5 -4.7 UDP-glucose 4-epimerase GalE compare
NOLOHH_20735 fadR -1.5 -1.2 fatty acid metabolism transcriptional regulator FadR compare
NOLOHH_17140 yeaV -1.5 -1.4 BCCT family transporter YeaV compare
NOLOHH_11515 lysS -1.5 -2.4 lysine--tRNA ligase compare
NOLOHH_14520 nuoN -1.5 -3.9 NADH-quinone oxidoreductase subunit NuoN compare
NOLOHH_11495 xerD -1.5 -2.5 site-specific tyrosine recombinase XerD compare
NOLOHH_17270 yeaC -1.5 -2.7 Uncharacterized protein YeaC compare
NOLOHH_05230 plsB -1.4 -1.6 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
NOLOHH_12545 recA -1.4 -2.1 recombinase RecA compare
NOLOHH_06520 -1.4 -1.2 DUF3289 domain-containing protein compare
NOLOHH_07555 rfaJ -1.4 -3.1 glucosyltransferase compare
NOLOHH_20865 bluF -1.4 -1.3 blue light-responsive regulator BluF compare
NOLOHH_22075 pflA -1.4 -1.5 pyruvate formate lyase 1-activating protein compare
NOLOHH_06300 dsbA -1.4 -4.0 thiol:disulfide interchange protein DsbA compare
NOLOHH_05965 pfkA -1.4 -3.7 6-phosphofructokinase compare
NOLOHH_11490 fldB -1.3 -5.2 flavodoxin FldB compare
NOLOHH_19520 -1.3 -1.2 YnbE family lipoprotein compare
NOLOHH_11770 yqeL -1.3 -1.7 Uncharacterized protein YqeL compare
NOLOHH_04525 miaA -1.3 -1.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
NOLOHH_19750 -1.3 -2.9 antiterminator compare
NOLOHH_16290 fliQ -1.3 -1.4 flagellar biosynthesis protein FliQ compare
NOLOHH_21095 fabF -1.2 -2.1 beta-ketoacyl-ACP synthase II compare
NOLOHH_03170 surA -1.2 -2.5 peptidylprolyl isomerase SurA compare
NOLOHH_21890 ssuE -1.2 -1.2 NADPH-dependent FMN reductase compare
NOLOHH_20355 ompW -1.2 -1.9 outer membrane protein OmpW compare
NOLOHH_18065 rsxC -1.2 -3.5 electron transport complex subunit RsxC compare
NOLOHH_10640 ygiN -1.2 -2.0 putative quinol monooxygenase YgiN compare
NOLOHH_09845 greA -1.2 -1.5 transcription elongation factor GreA compare
NOLOHH_18115 hdhA -1.2 -1.4 7-alpha-hydroxysteroid dehydrogenase compare
NOLOHH_19995 tpx -1.2 -1.2 thiol peroxidase compare
NOLOHH_09730 ptsN -1.2 -2.1 PTS IIA-like nitrogen regulatory protein PtsN compare
NOLOHH_14495 nuoI -1.2 -2.3 NADH-quinone oxidoreductase subunit NuoI compare
NOLOHH_08900 aroK -1.2 -1.6 shikimate kinase AroK compare
NOLOHH_19320 ydcH -1.2 -1.3 Uncharacterized protein YdcH compare
NOLOHH_07015 pstC -1.2 -2.5 phosphate ABC transporter permease PstC compare
NOLOHH_02485 rnhB -1.2 -2.0 ribonuclease HII compare
NOLOHH_18375 -1.1 -1.7 Ybl78 compare
NOLOHH_20710 nhaP2 -1.1 -2.7 potassium/proton antiporter compare
NOLOHH_14305 truA -1.1 -3.1 tRNA pseudouridine(38-40) synthase TruA compare
NOLOHH_16275 dsrB -1.1 -1.7 protein DsrB compare
NOLOHH_16870 yebF -1.1 -1.5 Protein YebF compare
NOLOHH_21205 flgB -1.1 -1.0 flagellar basal body rod protein FlgB compare
NOLOHH_19875 dbpA -1.1 -1.9 ATP-dependent RNA helicase DbpA compare
NOLOHH_21450 pgaB -1.1 -1.3 poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB compare
NOLOHH_21380 cgsE -1.1 -0.9 curli production assembly/transport protein CsgE compare
NOLOHH_22195 cspD -1.1 -1.1 cold shock-like protein CspD compare
NOLOHH_08605 yrhA -1.1 -0.9 protein YrhA compare
NOLOHH_16010 pduA -1.1 -2.5 propanediol utilization microcompartment protein PduA compare
NOLOHH_23245 tolA -1.1 -3.2 cell envelope integrity protein TolA compare
NOLOHH_06385 fre -1.0 -5.9 NAD(P)H-flavin reductase compare
NOLOHH_21200 flgC -1.0 -1.5 flagellar basal body rod protein FlgC compare
NOLOHH_19455 paaC -1.0 -1.5 3-hydroxyacyl-CoA dehydrogenase PaaC compare
NOLOHH_23335 sdhC -1.0 -1.7 succinate dehydrogenase cytochrome b556 subunit compare
NOLOHH_09355 aroE -1.0 -3.8 shikimate dehydrogenase compare
NOLOHH_23240 tolB -1.0 -4.3 Tol-Pal system protein TolB compare
NOLOHH_16170 yodB -1.0 -2.5 Cytochrome b561-like protein compare
NOLOHH_20745 dsbB -1.0 -1.8 disulfide bond formation protein DsbB compare
NOLOHH_00545 -1.0 -2.5 Major capsid protein compare
NOLOHH_09610 zapG -1.0 -4.3 Z-ring associated protein ZapG compare
NOLOHH_14160 Arg_trna -1.0 -2.5 tRNA-Arg(cct) compare
NOLOHH_14505 nuoK -1.0 -1.6 NADH-quinone oxidoreductase subunit NuoK compare
NOLOHH_18070 rsxB -1.0 -0.7 electron transport complex subunit RsxB compare
NOLOHH_20555 chaB -1.0 -1.0 putative cation transport regulator ChaB compare
NOLOHH_21940 aspC -1.0 -0.9 aspartate transaminase compare
NOLOHH_19635 -1.0 -1.1 hypothetical protein compare
NOLOHH_12315 hosA -1.0 -2.8 Transcriptional regulator HosA compare
NOLOHH_18755 yneJ -1.0 -1.0 Uncharacterized HTH-type transcriptional regulator YneJ compare
NOLOHH_13320 iscX -1.0 -1.1 Fe-S cluster assembly protein IscX compare
NOLOHH_04490 nsrR -1.0 -4.4 nitric oxide-sensing transcriptional repressor NsrR compare
NOLOHH_17655 aroH -1.0 -1.9 3-deoxy-7-phosphoheptulonate synthase AroH compare
NOLOHH_08510 ftsE -0.9 -1.8 cell division ATP-binding protein FtsE compare
NOLOHH_04165 treC -0.9 -3.2 alpha,alpha-phosphotrehalase compare
NOLOHH_07535 rfaG -0.9 -2.5 Lipopolysaccharide core biosynthesis protein RfaG compare
NOLOHH_22965 -0.9 -2.5 XRE family transcriptional regulator compare
NOLOHH_13070 rseC -0.9 -2.3 SoxR-reducing system protein RseC compare
NOLOHH_08775 -0.9 -3.2 NfuA family Fe-S biogenesis protein compare
NOLOHH_06585 cyaY -0.9 -3.6 iron donor protein CyaY compare
NOLOHH_07565 rfaL -0.9 -3.2 O-antigen ligase RfaL compare
NOLOHH_19435 paaX -0.9 -1.3 phenylacetic acid degradation operon negative regulatory protein PaaX compare
NOLOHH_00240 -0.9 -2.0 Entry exclusion protein compare
NOLOHH_05335 pgi -0.9 -5.4 glucose-6-phosphate isomerase compare
NOLOHH_18325 -0.9 -1.2 DNA-binding protein compare
NOLOHH_10405 ebgR -0.9 -4.1 transcriptional regulator EbgR compare
NOLOHH_07540 rfaP -0.9 -3.3 lipopolysaccharide core heptose(I) kinase RfaP compare
NOLOHH_09905 nusA -0.9 -2.5 Transcription termination/antitermination protein NusA compare
NOLOHH_20285 yciK -0.9 -1.9 YciK family oxidoreductase compare
NOLOHH_00405 hipB -0.9 -0.9 XRE family transcriptional regulator compare
NOLOHH_17515 cedA -0.9 -0.7 cell division activator CedA compare
NOLOHH_07530 rfaQ -0.9 -4.9 lipopolysaccharide core heptosyltransferase RfaQ compare
NOLOHH_03030 cra -0.9 -3.6 catabolite repressor/activator compare
NOLOHH_12680 nrdH -0.9 -1.8 glutaredoxin-like protein NrdH compare
NOLOHH_24115 -0.9 -0.7 hypothetical protein compare
NOLOHH_00090 -0.9 -2.3 hypothetical protein compare
NOLOHH_17055 -0.8 -0.7 Cytoplasmic protein compare
NOLOHH_17075 nudL -0.8 -1.7 CoA pyrophosphatase compare
NOLOHH_00565 -0.8 -1.0 Lambda prophage-derived head-to-tail joining protein W compare
NOLOHH_00175 -0.8 -3.9 StdB protein compare
NOLOHH_09940 pnp -0.8 -4.9 polyribonucleotide nucleotidyltransferase compare
NOLOHH_08905 aroB -0.8 -2.7 3-dehydroquinate synthase compare
NOLOHH_07010 pstS -0.8 -4.3 phosphate ABC transporter substrate-binding protein PstS compare
NOLOHH_06665 wzyE -0.8 -2.4 ECA oligosaccharide polymerase compare
NOLOHH_18280 ynfE -0.8 -2.3 Putative dimethyl sulfoxide reductase chain YnfE compare
NOLOHH_20940 potB -0.8 -1.4 spermidine/putrescine ABC transporter permease PotB compare
NOLOHH_15960 pduM -0.8 -1.2 microcompartment protein PduM compare
NOLOHH_13410 guaB -0.8 -4.7 IMP dehydrogenase compare
NOLOHH_14465 nuoB -0.8 -2.7 NADH-quinone oxidoreductase subunit NuoB compare
NOLOHH_16385 fliS -0.8 -2.2 flagellar export chaperone FliS compare
NOLOHH_21880 elfD -0.8 -1.1 putative fimbrial chaperone protein ElfD compare
NOLOHH_20380 yciI -0.8 -0.6 YciI family protein compare
NOLOHH_24475 -0.8 -1.1 pilus assembly protein compare
NOLOHH_16335 fliH -0.8 -1.0 flagellar assembly protein FliH compare
NOLOHH_20460 galU -0.8 -1.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
NOLOHH_08720 glpD -0.8 -3.2 glycerol-3-phosphate dehydrogenase compare
NOLOHH_01255 lon_P403L -0.8 -3.5 Lon protease compare
NOLOHH_23495 ybfE -0.8 -2.4 LexA regulated protein compare
NOLOHH_13435 -0.8 -0.7 hypothetical protein compare
NOLOHH_07550 rfaY -0.8 -2.0 lipopolysaccharide core heptose(II) kinase RfaY compare
NOLOHH_01215 decR -0.8 -1.3 DNA-binding transcriptional regulator DecR compare
NOLOHH_18155 fumC -0.8 -0.7 class II fumarate hydratase compare
NOLOHH_16640 cutC -0.8 -2.4 copper homeostasis protein CutC compare
NOLOHH_06715 wecA -0.8 -6.5 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
NOLOHH_06590 cyaA -0.8 -4.3 class I adenylate cyclase compare
NOLOHH_19035 maeA -0.8 -2.0 malate dehydrogenase compare
NOLOHH_18275 bisC -0.8 -2.1 Anaerobic selenocysteine-containing dehydrogenase compare
NOLOHH_02175 yncI -0.8 -1.4 ISAs1 family transposase compare
NOLOHH_19535 hslJ -0.8 -1.1 heat shock protein HslJ compare
NOLOHH_07560 rfaB -0.8 -2.7 UDP-glucose--(glucosyl)LPS alpha-1,2-glucosyltransferase compare
NOLOHH_05695 sthA -0.8 -3.7 Si-specific NAD(P)(+) transhydrogenase compare
NOLOHH_13790 yfeZ -0.8 -2.7 Inner membrane protein YfeZ compare
NOLOHH_21795 matP -0.8 -1.5 macrodomain Ter protein MatP compare
NOLOHH_16355 yedK -0.8 -0.9 Abasic site processing protein YedK compare
NOLOHH_17175 yeaQ -0.8 -1.9 UPF0410 protein YeaQ compare
NOLOHH_16955 yebT -0.8 -2.6 lipid-binding membrane homeostasis protein YebT compare
NOLOHH_04505 hflC -0.8 -1.3 protease modulator HflC compare
NOLOHH_24835 traK -0.8 -3.0 type-F conjugative transfer system secretin TraK compare
NOLOHH_17370 ynjF -0.8 -2.1 Inner membrane protein YnjF compare
NOLOHH_18130 uidB -0.7 -1.7 glucuronide transporter compare
NOLOHH_16575 tar -0.7 -1.4 methyl-accepting chemotaxis protein II compare
NOLOHH_05225 dgkA -0.7 -1.6 diacylglycerol kinase compare
NOLOHH_10290 exuR -0.7 -2.8 transcriptional regulator ExuR compare
NOLOHH_03525 serB -0.7 -4.3 phosphoserine phosphatase compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECOR27 in phage experiments

For phage Phage across organisms