Experiment set3S296 for Phocaeicola dorei CL03T12C01

Compare to:

Red Arabinan from sugar-beet; filtered 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS02970 -6.4 -9.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS06055 -6.4 -8.7 phosphoribosylamine--glycine ligase compare
ABI39_RS07005 -6.3 -8.1 type II 3-dehydroquinate dehydratase compare
ABI39_RS07790 -6.3 -8.8 M20 family metallo-hydrolase compare
ABI39_RS00475 -6.2 -4.5 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS05660 -6.2 -9.5 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS10495 -6.2 -9.1 prephenate dehydrogenase compare
ABI39_RS16910 -5.9 -10.9 3-phosphoglycerate dehydrogenase compare
ABI39_RS11840 -5.9 -4.1 histidinol-phosphate transaminase compare
ABI39_RS11405 -5.8 -12.5 hypothetical protein compare
ABI39_RS04685 -5.7 -4.0 acetylglutamate kinase compare
ABI39_RS10435 -5.7 -11.3 cofactor-independent phosphoglycerate mutase compare
ABI39_RS10215 -5.6 -11.1 3-isopropylmalate dehydrogenase compare
ABI39_RS10200 -5.6 -15.7 3-isopropylmalate dehydratase large subunit compare
ABI39_RS12715 -5.6 -11.6 dihydroxy-acid dehydratase compare
ABI39_RS19935 -5.6 -11.2 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS19930 -5.5 -5.7 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS00515 -5.4 -3.7 hypothetical protein compare
ABI39_RS21060 -5.4 -8.9 anthranilate phosphoribosyltransferase compare
ABI39_RS10210 -5.4 -10.5 2-isopropylmalate synthase compare
ABI39_RS10195 -5.4 -8.2 2-isopropylmalate synthase compare
ABI39_RS02875 -5.3 -13.8 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS00405 -5.3 -20.2 phosphoribosylformylglycinamidine synthase compare
ABI39_RS10505 -5.3 -12.8 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS10260 -5.3 -11.5 adenylosuccinate synthase compare
ABI39_RS02960 -5.3 -13.9 pyrroline-5-carboxylate reductase compare
ABI39_RS02975 -5.3 -9.5 argininosuccinate synthase compare
ABI39_RS12720 -5.2 -15.8 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS07095 -5.2 -19.5 argininosuccinate lyase compare
ABI39_RS10430 -5.2 -14.9 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS02315 -5.2 -11.6 IMP dehydrogenase compare
ABI39_RS11845 -5.2 -7.9 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS11630 -5.2 -7.6 L-ribulose-5-phosphate 4-epimerase compare
ABI39_RS12645 -5.1 -16.5 chorismate synthase compare
ABI39_RS20070 -5.1 -7.8 UDP-glucose 4-epimerase GalE compare
ABI39_RS12770 -5.1 -3.5 hypothetical protein compare
ABI39_RS11835 -5.0 -6.9 histidinol dehydrogenase compare
ABI39_RS10640 -5.0 -13.2 serine dehydratase subunit alpha family protein compare
ABI39_RS02880 -5.0 -10.5 glutamate 5-kinase compare
ABI39_RS21045 -5.0 -6.8 tryptophan synthase subunit beta compare
ABI39_RS10440 -5.0 -7.6 threonine synthase compare
ABI39_RS21050 -4.9 -9.3 anthranilate synthase component I family protein compare
ABI39_RS17420 -4.9 -8.2 serine hydroxymethyltransferase compare
ABI39_RS12415 -4.9 -5.7 biotin/lipoyl-binding protein compare
ABI39_RS16905 -4.8 -15.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS12675 -4.8 -6.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS00770 -4.8 -13.3 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS02870 -4.8 -7.0 acetylornithine carbamoyltransferase compare
ABI39_RS04695 -4.8 -7.3 shikimate kinase compare
ABI39_RS09685 -4.7 -3.2 hypothetical protein compare
ABI39_RS06670 -4.7 -16.2 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS11830 -4.7 -5.5 ATP phosphoribosyltransferase compare
ABI39_RS21075 -4.6 -7.0 tryptophan synthase subunit alpha compare
ABI39_RS02980 -4.5 -11.7 N-acetyltransferase compare
ABI39_RS10205 -4.5 -5.8 3-isopropylmalate dehydratase small subunit compare
ABI39_RS19920 -4.5 -7.6 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS14465 -4.5 -9.6 hypothetical protein compare
ABI39_RS19925 -4.5 -8.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS11620 -4.5 -16.9 FGGY-family carbohydrate kinase compare
ABI39_RS12735 -4.4 -9.2 ketol-acid reductoisomerase compare
ABI39_RS12665 -4.4 -9.3 shikimate dehydrogenase compare
ABI39_RS11625 -4.4 -11.7 L-arabinose isomerase compare
ABI39_RS10870 -4.4 -13.6 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS01360 -4.3 -8.7 hypothetical protein compare
ABI39_RS14560 -4.3 -4.2 aspartate 1-decarboxylase compare
ABI39_RS10510 -4.3 -8.6 prephenate dehydratase compare
ABI39_RS02965 -4.2 -14.3 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS15415 -4.1 -6.6 hypothetical protein compare
ABI39_RS04795 -4.1 -2.6 M28 family peptidase compare
ABI39_RS06675 -4.1 -9.3 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS18330 -4.1 -13.2 PD40 domain-containing protein compare
ABI39_RS11640 -4.1 -12.8 sodium:solute symporter compare
ABI39_RS21065 -4.0 -6.4 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS10110 -4.0 -14.4 S9 family peptidase compare
ABI39_RS00205 -4.0 -3.9 phosphoglucosamine mutase compare
ABI39_RS19950 -4.0 -5.5 diaminopimelate decarboxylase compare
ABI39_RS19945 -3.9 -12.7 aspartate kinase compare
ABI39_RS04245 -3.9 -2.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS03005 -3.9 -13.6 rhamnulose-1-phosphate aldolase compare
ABI39_RS04505 -3.9 -6.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS11645 -3.9 -9.9 galactose mutarotase compare
ABI39_RS09845 -3.8 -3.7 (d)CMP kinase compare
ABI39_RS01415 -3.8 -3.6 branched-chain amino acid aminotransferase compare
ABI39_RS17175 -3.7 -4.4 tetratricopeptide repeat protein compare
ABI39_RS12425 -3.7 -9.8 acyl-CoA carboxylase subunit beta compare
ABI39_RS06010 -3.7 -9.2 polysaccharide deacetylase family protein compare
ABI39_RS18745 -3.7 -5.0 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS14030 -3.7 -4.4 MFS transporter compare
ABI39_RS02500 -3.6 -9.0 pyridoxine 5'-phosphate synthase compare
ABI39_RS01655 -3.6 -12.6 methylmalonyl-CoA mutase compare
ABI39_RS08195 -3.6 -6.8 hypothetical protein compare
ABI39_RS06250 -3.5 -12.7 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS17195 -3.5 -13.5 hypothetical protein compare
ABI39_RS17140 -3.4 -2.3 AAA family ATPase compare
ABI39_RS10500 -3.4 -5.8 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS19985 -3.4 -2.8 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS12420 -3.3 -6.9 OadG family protein compare
ABI39_RS04885 -3.2 -2.2 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS06995 -3.2 -7.8 tetratricopeptide repeat protein compare
ABI39_RS15410 -3.2 -5.6 DUF4296 domain-containing protein compare
ABI39_RS12725 -3.1 -5.2 acetolactate synthase small subunit compare
ABI39_RS16870 -3.1 -4.1 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS09575 -3.1 -2.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS10650 -3.1 -17.0 AraC family transcriptional regulator compare
ABI39_RS16885 -3.0 -3.5 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS04690 -3.0 -9.3 biosynthetic arginine decarboxylase compare
ABI39_RS17945 -3.0 -16.0 glutamine synthetase III compare
ABI39_RS16880 -3.0 -3.5 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS19385 -3.0 -4.2 hypothetical protein compare
ABI39_RS01650 -2.9 -8.4 methylmalonyl-CoA mutase small subunit compare
ABI39_RS05175 -2.9 -7.8 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS15375 -2.9 -13.9 sugar kinase compare
ABI39_RS21350 -2.9 -3.4 aspartate--ammonia ligase compare
ABI39_RS06380 -2.9 -7.4 GH3 auxin-responsive promoter family protein compare
ABI39_RS17950 -2.9 -3.4 Crp/Fnr family transcriptional regulator compare
ABI39_RS09855 -2.9 -2.0 polyprenyl synthetase family protein compare
ABI39_RS08305 -2.9 -8.5 DUF4831 family protein compare
ABI39_RS01300 -2.9 -13.7 NADP-specific glutamate dehydrogenase compare
ABI39_RS15380 -2.9 -1.7 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
ABI39_RS09850 -2.8 -5.6 energy transducer TonB compare
ABI39_RS20965 -2.8 -2.6 SPOR domain-containing protein compare
ABI39_RS15320 -2.7 -10.6 PorT family protein compare
ABI39_RS04280 -2.7 -6.2 DUF4292 domain-containing protein compare
ABI39_RS04700 -2.7 -4.4 type I DNA topoisomerase compare
ABI39_RS04230 -2.7 -7.2 RNA polymerase factor sigma-54 compare
ABI39_RS08035 -2.6 -3.1 adenylosuccinate lyase compare
ABI39_RS06920 -2.6 -6.5 glycosyltransferase compare
ABI39_RS12955 -2.6 -7.0 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS06115 -2.6 -9.3 phosphatase PAP2 family protein compare
ABI39_RS21055 -2.5 -3.7 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS16895 -2.5 -3.2 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS02755 -2.5 -2.4 glycosyltransferase compare
ABI39_RS12565 -2.5 -7.3 hypothetical protein compare
ABI39_RS08185 -2.5 -7.6 hemolysin III family protein compare
ABI39_RS16875 -2.5 -4.0 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS04145 -2.5 -2.3 transcription elongation factor GreA compare
ABI39_RS14230 -2.5 -12.4 alpha-amylase compare
ABI39_RS02290 -2.4 -4.6 hypothetical protein compare
ABI39_RS06925 -2.4 -10.1 glycosyltransferase compare
ABI39_RS17150 -2.4 -4.2 hypothetical protein compare
ABI39_RS09245 -2.4 -14.4 cardiolipin synthase compare
ABI39_RS14225 -2.3 -11.2 glycosyltransferase compare
ABI39_RS12560 -2.3 -11.3 GGGtGRT protein compare
ABI39_RS02140 -2.3 -3.0 TetR/AcrR family transcriptional regulator compare
ABI39_RS09195 -2.3 -2.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS13180 -2.3 -3.4 FAD:protein FMN transferase compare
ABI39_RS11545 -2.3 -8.6 hypothetical protein compare
ABI39_RS17170 -2.3 -2.1 protein BatD compare
ABI39_RS20355 -2.2 -13.3 carboxypeptidase-like regulatory domain-containing protein compare
ABI39_RS07090 -2.2 -1.2 hypothetical protein compare
ABI39_RS08850 -2.2 -4.3 toprim domain-containing protein compare
ABI39_RS12755 -2.1 -3.1 SurA N-terminal domain-containing protein compare
ABI39_RS13185 -2.1 -2.0 manganese efflux pump compare
ABI39_RS17315 -2.1 -10.6 alpha amylase C-terminal domain-containing protein compare
ABI39_RS17160 -2.1 -2.4 VWA domain-containing protein compare
ABI39_RS08135 -2.0 -2.3 YicC family protein compare
ABI39_RS20105 -2.0 -7.0 Fe-S cluster domain-containing protein compare
ABI39_RS17745 -2.0 -2.4 sulfur carrier protein ThiS compare
ABI39_RS04860 -2.0 -2.0 HigA family addiction module antidote protein compare
ABI39_RS00520 -2.0 -9.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABI39_RS18740 -2.0 -5.6 ATP-binding protein compare
ABI39_RS13000 -1.9 -5.2 sigma-54-dependent Fis family transcriptional regulator compare
ABI39_RS11940 -1.9 -11.7 saccharopine dehydrogenase family protein compare
ABI39_RS10085 -1.9 -3.9 enoyl-ACP reductase compare
ABI39_RS09515 -1.9 -3.9 nucleoside deaminase compare
ABI39_RS06220 -1.9 -9.4 glycosyltransferase family 2 protein compare
ABI39_RS02470 -1.8 -4.8 ATP-dependent DNA helicase RecG compare
ABI39_RS04930 -1.8 -5.2 helix-turn-helix transcriptional regulator compare
ABI39_RS06235 -1.8 -5.3 UDP-galactopyranose mutase compare
ABI39_RS11485 -1.8 -3.3 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS12150 -1.8 -2.7 hotdog fold thioesterase compare
ABI39_RS09830 -1.8 -7.8 methylmalonyl Co-A mutase-associated GTPase MeaB compare
ABI39_RS12670 -1.7 -4.0 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
ABI39_RS20410 -1.7 -3.8 GDP-mannose 4,6-dehydratase compare
ABI39_RS12970 -1.7 -7.0 CDP-alcohol phosphatidyltransferase family protein compare
ABI39_RS15760 -1.7 -1.8 hypothetical protein compare
ABI39_RS17750 -1.7 -4.7 thiamine phosphate synthase compare
ABI39_RS12945 -1.7 -5.4 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABI39_RS06940 -1.6 -3.9 LicD family protein compare
ABI39_RS19915 -1.6 -8.0 formyltetrahydrofolate deformylase compare
ABI39_RS20085 -1.6 -4.5 electron transport complex subunit E compare
ABI39_RS12430 -1.6 -1.1 methylmalonyl-CoA epimerase compare
ABI39_RS14715 -1.6 -5.5 RidA family protein compare
ABI39_RS11650 -1.6 -6.1 galactokinase compare
ABI39_RS05280 -1.6 -9.1 S41 family peptidase compare
ABI39_RS06585 -1.5 -10.5 response regulator compare
ABI39_RS17775 -1.5 -9.4 2-iminoacetate synthase ThiH compare
ABI39_RS16385 -1.5 -2.4 hypothetical protein compare
ABI39_RS00760 -1.5 -2.1 YjgP/YjgQ family permease compare
ABI39_RS20895 -1.5 -9.0 alpha-N-arabinofuranosidase compare
ABI39_RS14245 -1.5 -7.3 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS17205 -1.5 -3.0 ATP-dependent Clp protease ATP-binding subunit compare
ABI39_RS15365 -1.5 -2.7 altronate dehydratase compare
ABI39_RS11635 -1.4 -1.6 NUDIX hydrolase compare
ABI39_RS13845 -1.4 -1.1 histone H1 compare
ABI39_RS12965 -1.4 -7.3 hypothetical protein compare
ABI39_RS06935 -1.4 -5.8 hemolysin activation protein compare
ABI39_RS14265 -1.4 -5.0 ATP-dependent dethiobiotin synthetase BioD compare
ABI39_RS06595 -1.4 -8.1 carbohydrate binding domain-containing protein compare
ABI39_RS02350 -1.4 -4.5 ABC transporter permease compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Red Arabinan from sugar-beet; filtered in Phocaeicola dorei CL03T12C01

For carbon source Red Arabinan from sugar-beet; filtered across organisms