Experiment set3S296 for Phocaeicola dorei CL03T12C01
Red Arabinan from sugar-beet; filtered 2.5 mg/ml carbon source
Group: carbon sourceMedia: Varel_Bryant_medium + Red Arabinan from sugar-beet; filtered (2.5 mg/ml)
Culturing: Bdorei_CL03T12C01_ML9, 96 deep-well microplate; 1.2 mL volume, Anaerobic, at 37 (C), shaken=0 rpm
By: Surya Tripathi on 3/20/24
Media components: 15 uM Hemin, 134 uM L-Methionine, 15 uM Iron (II) sulfate heptahydrate, 8.25 mM L-Cysteine, 23.8 mM Sodium bicarbonate, Mineral 3B solution (6.6 mM Potassium phosphate monobasic, 15.4 mM Sodium Chloride, 98 uM Magnesium chloride hexahydrate, 176.5 uM Calcium chloride dihydrate, 4.2 uM Cobalt chloride hexahydrate, 50.5 uM Manganese (II) chloride tetrahydrate, 9.3 mM Ammonium chloride, 1.75 mM Sodium sulfate)
Specific Phenotypes
For 3 genes in this experiment
For carbon source Red Arabinan from sugar-beet; filtered in Phocaeicola dorei CL03T12C01
For carbon source Red Arabinan from sugar-beet; filtered across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| L-Arabinose utilization | 1 |
| Oxidative stress | 1 |
| Rubrerythrin | 1 |
| Xylose utilization | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| (1,4)-β-D-xylan degradation | 2 | 2 | 1 |