Experiment set3S291 for Phocaeicola dorei CL03T12C01

Compare to:

Red Arabinan from sugar-beet; filtered 5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS04685 -9.6 -6.7 acetylglutamate kinase compare
ABI39_RS07005 -7.8 -6.5 type II 3-dehydroquinate dehydratase compare
ABI39_RS02315 -7.2 -7.0 IMP dehydrogenase compare
ABI39_RS05660 -6.8 -9.3 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS17420 -6.5 -9.0 serine hydroxymethyltransferase compare
ABI39_RS12720 -6.3 -13.4 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS02975 -6.2 -14.5 argininosuccinate synthase compare
ABI39_RS19935 -6.2 -11.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS00475 -6.2 -8.4 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS00405 -6.2 -21.4 phosphoribosylformylglycinamidine synthase compare
ABI39_RS07095 -6.2 -21.6 argininosuccinate lyase compare
ABI39_RS06055 -6.1 -10.9 phosphoribosylamine--glycine ligase compare
ABI39_RS10495 -6.1 -10.1 prephenate dehydrogenase compare
ABI39_RS10505 -6.0 -12.9 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS21065 -6.0 -9.2 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS02880 -6.0 -14.9 glutamate 5-kinase compare
ABI39_RS10440 -6.0 -8.7 threonine synthase compare
ABI39_RS02870 -5.9 -11.3 acetylornithine carbamoyltransferase compare
ABI39_RS02980 -5.9 -8.1 N-acetyltransferase compare
ABI39_RS10640 -5.9 -14.6 serine dehydratase subunit alpha family protein compare
ABI39_RS07790 -5.8 -12.4 M20 family metallo-hydrolase compare
ABI39_RS16910 -5.8 -12.4 3-phosphoglycerate dehydrogenase compare
ABI39_RS10205 -5.8 -8.6 3-isopropylmalate dehydratase small subunit compare
ABI39_RS19925 -5.7 -9.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS10200 -5.7 -18.3 3-isopropylmalate dehydratase large subunit compare
ABI39_RS10260 -5.7 -13.3 adenylosuccinate synthase compare
ABI39_RS10510 -5.7 -13.4 prephenate dehydratase compare
ABI39_RS10435 -5.7 -10.4 cofactor-independent phosphoglycerate mutase compare
ABI39_RS12665 -5.6 -9.4 shikimate dehydrogenase compare
ABI39_RS10210 -5.6 -15.2 2-isopropylmalate synthase compare
ABI39_RS02970 -5.6 -12.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS11840 -5.5 -5.4 histidinol-phosphate transaminase compare
ABI39_RS14560 -5.5 -3.8 aspartate 1-decarboxylase compare
ABI39_RS10430 -5.5 -16.8 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS19930 -5.4 -7.1 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS02875 -5.4 -13.0 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS16905 -5.4 -14.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS02965 -5.4 -13.6 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS21050 -5.3 -9.6 anthranilate synthase component I family protein compare
ABI39_RS21060 -5.3 -12.3 anthranilate phosphoribosyltransferase compare
ABI39_RS10215 -5.3 -13.0 3-isopropylmalate dehydrogenase compare
ABI39_RS12645 -5.3 -17.8 chorismate synthase compare
ABI39_RS21075 -5.3 -7.5 tryptophan synthase subunit alpha compare
ABI39_RS00770 -5.2 -14.5 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS11845 -5.2 -8.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS02960 -5.2 -14.9 pyrroline-5-carboxylate reductase compare
ABI39_RS12770 -5.2 -3.6 hypothetical protein compare
ABI39_RS12675 -5.1 -7.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS12715 -5.0 -12.5 dihydroxy-acid dehydratase compare
ABI39_RS12735 -5.0 -9.6 ketol-acid reductoisomerase compare
ABI39_RS09685 -5.0 -3.4 hypothetical protein compare
ABI39_RS10870 -5.0 -13.5 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS00205 -5.0 -3.4 phosphoglucosamine mutase compare
ABI39_RS11405 -4.9 -14.1 hypothetical protein compare
ABI39_RS04695 -4.9 -8.2 shikimate kinase compare
ABI39_RS12955 -4.8 -8.6 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS21045 -4.8 -7.3 tryptophan synthase subunit beta compare
ABI39_RS10110 -4.8 -15.3 S9 family peptidase compare
ABI39_RS20070 -4.8 -9.1 UDP-glucose 4-epimerase GalE compare
ABI39_RS11835 -4.7 -7.1 histidinol dehydrogenase compare
ABI39_RS11630 -4.6 -9.0 L-ribulose-5-phosphate 4-epimerase compare
ABI39_RS06675 -4.6 -12.0 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS04795 -4.5 -3.0 M28 family peptidase compare
ABI39_RS11830 -4.5 -6.0 ATP phosphoribosyltransferase compare
ABI39_RS01360 -4.4 -9.4 hypothetical protein compare
ABI39_RS03005 -4.4 -14.8 rhamnulose-1-phosphate aldolase compare
ABI39_RS10195 -4.4 -8.8 2-isopropylmalate synthase compare
ABI39_RS06670 -4.4 -16.1 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS05175 -4.4 -5.9 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS02500 -4.3 -11.5 pyridoxine 5'-phosphate synthase compare
ABI39_RS04245 -4.3 -3.0 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS19950 -4.2 -5.7 diaminopimelate decarboxylase compare
ABI39_RS10500 -4.2 -6.9 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS19920 -4.1 -9.3 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS19945 -4.1 -13.0 aspartate kinase compare
ABI39_RS17950 -4.1 -2.8 Crp/Fnr family transcriptional regulator compare
ABI39_RS09845 -4.1 -3.9 (d)CMP kinase compare
ABI39_RS06250 -4.1 -17.6 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS11620 -4.1 -12.8 FGGY-family carbohydrate kinase compare
ABI39_RS11645 -4.0 -12.4 galactose mutarotase compare
ABI39_RS11625 -4.0 -14.7 L-arabinose isomerase compare
ABI39_RS19985 -4.0 -3.1 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS18745 -3.9 -3.8 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS11640 -3.9 -17.3 sodium:solute symporter compare
ABI39_RS04505 -3.8 -9.9 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS21350 -3.8 -2.6 aspartate--ammonia ligase compare
ABI39_RS17945 -3.8 -16.4 glutamine synthetase III compare
ABI39_RS01300 -3.8 -15.6 NADP-specific glutamate dehydrogenase compare
ABI39_RS18330 -3.7 -12.5 PD40 domain-containing protein compare
ABI39_RS08195 -3.7 -7.7 hypothetical protein compare
ABI39_RS01415 -3.7 -3.6 branched-chain amino acid aminotransferase compare
ABI39_RS06010 -3.7 -10.6 polysaccharide deacetylase family protein compare
ABI39_RS06995 -3.6 -10.4 tetratricopeptide repeat protein compare
ABI39_RS08305 -3.6 -7.2 DUF4831 family protein compare
ABI39_RS04690 -3.6 -12.8 biosynthetic arginine decarboxylase compare
ABI39_RS17140 -3.3 -2.3 AAA family ATPase compare
ABI39_RS09575 -3.3 -3.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS16875 -3.2 -3.8 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS14030 -3.2 -6.4 MFS transporter compare
ABI39_RS04885 -3.2 -3.1 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS10650 -3.2 -18.4 AraC family transcriptional regulator compare
ABI39_RS09855 -3.1 -2.1 polyprenyl synthetase family protein compare
ABI39_RS15415 -3.1 -7.4 hypothetical protein compare
ABI39_RS15375 -3.1 -12.5 sugar kinase compare
ABI39_RS08035 -3.1 -3.0 adenylosuccinate lyase compare
ABI39_RS06380 -3.1 -9.3 GH3 auxin-responsive promoter family protein compare
ABI39_RS17175 -3.1 -5.4 tetratricopeptide repeat protein compare
ABI39_RS14230 -3.1 -15.4 alpha-amylase compare
ABI39_RS12725 -3.0 -4.8 acetolactate synthase small subunit compare
ABI39_RS06115 -3.0 -12.2 phosphatase PAP2 family protein compare
ABI39_RS02755 -3.0 -2.1 glycosyltransferase compare
ABI39_RS14225 -3.0 -13.4 glycosyltransferase compare
ABI39_RS15380 -3.0 -3.5 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
ABI39_RS16870 -3.0 -4.0 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS14465 -3.0 -8.3 hypothetical protein compare
ABI39_RS17195 -2.8 -11.9 hypothetical protein compare
ABI39_RS21055 -2.7 -6.8 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS16885 -2.7 -3.6 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS07090 -2.7 -1.6 hypothetical protein compare
ABI39_RS17170 -2.7 -1.8 protein BatD compare
ABI39_RS13185 -2.7 -2.3 manganese efflux pump compare
ABI39_RS17315 -2.6 -13.1 alpha amylase C-terminal domain-containing protein compare
ABI39_RS11545 -2.6 -9.1 hypothetical protein compare
ABI39_RS06920 -2.5 -6.2 glycosyltransferase compare
ABI39_RS19385 -2.5 -4.6 hypothetical protein compare
ABI39_RS12415 -2.5 -5.6 biotin/lipoyl-binding protein compare
ABI39_RS17150 -2.4 -4.2 hypothetical protein compare
ABI39_RS12420 -2.4 -7.4 OadG family protein compare
ABI39_RS04280 -2.4 -6.7 DUF4292 domain-containing protein compare
ABI39_RS12560 -2.4 -12.6 GGGtGRT protein compare
ABI39_RS05780 -2.4 -14.8 response regulator transcription factor compare
ABI39_RS05800 -2.3 -9.2 hypothetical protein compare
ABI39_RS12425 -2.3 -10.6 acyl-CoA carboxylase subunit beta compare
ABI39_RS15410 -2.3 -4.9 DUF4296 domain-containing protein compare
ABI39_RS16895 -2.3 -3.4 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS00515 -2.3 -4.3 hypothetical protein compare
ABI39_RS04700 -2.3 -4.0 type I DNA topoisomerase compare
ABI39_RS02140 -2.2 -2.4 TetR/AcrR family transcriptional regulator compare
ABI39_RS05785 -2.2 -10.5 HAMP domain-containing histidine kinase compare
ABI39_RS09195 -2.2 -2.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS16880 -2.2 -3.5 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS12565 -2.1 -8.5 hypothetical protein compare
ABI39_RS02290 -2.1 -3.5 hypothetical protein compare
ABI39_RS11940 -2.1 -14.0 saccharopine dehydrogenase family protein compare
ABI39_RS17755 -2.0 -4.3 thiazole synthase compare
ABI39_RS17160 -2.0 -2.3 VWA domain-containing protein compare
ABI39_RS09515 -2.0 -5.1 nucleoside deaminase compare
ABI39_RS04730 -1.9 -2.6 Lrp/AsnC ligand binding domain-containing protein compare
ABI39_RS17770 -1.9 -6.6 flavodoxin family protein compare
ABI39_RS17745 -1.9 -3.0 sulfur carrier protein ThiS compare
ABI39_RS19915 -1.9 -9.1 formyltetrahydrofolate deformylase compare
ABI39_RS17750 -1.9 -6.4 thiamine phosphate synthase compare
ABI39_RS12945 -1.9 -4.8 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABI39_RS05450 -1.9 -5.1 redox-regulated ATPase YchF compare
ABI39_RS09850 -1.9 -5.2 energy transducer TonB compare
ABI39_RS06925 -1.8 -10.3 glycosyltransferase compare
ABI39_RS04930 -1.8 -5.2 helix-turn-helix transcriptional regulator compare
ABI39_RS09245 -1.8 -8.1 cardiolipin synthase compare
ABI39_RS12670 -1.8 -4.7 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
ABI39_RS12755 -1.8 -3.0 SurA N-terminal domain-containing protein compare
ABI39_RS17205 -1.8 -3.7 ATP-dependent Clp protease ATP-binding subunit compare
ABI39_RS08185 -1.8 -8.7 hemolysin III family protein compare
ABI39_RS20615 -1.8 -8.6 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
ABI39_RS00520 -1.7 -7.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABI39_RS14715 -1.7 -3.9 RidA family protein compare
ABI39_RS17775 -1.7 -9.1 2-iminoacetate synthase ThiH compare
ABI39_RS15320 -1.7 -10.0 PorT family protein compare
ABI39_RS04230 -1.7 -6.9 RNA polymerase factor sigma-54 compare
ABI39_RS13180 -1.6 -3.6 FAD:protein FMN transferase compare
ABI39_RS13000 -1.6 -5.3 sigma-54-dependent Fis family transcriptional regulator compare
ABI39_RS04970 -1.6 -4.1 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS01650 -1.6 -7.7 methylmalonyl-CoA mutase small subunit compare
ABI39_RS20410 -1.6 -5.6 GDP-mannose 4,6-dehydratase compare
ABI39_RS07420 -1.6 -6.3 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS10250 -1.6 -3.2 DNA alkylation repair protein compare
ABI39_RS01655 -1.6 -8.0 methylmalonyl-CoA mutase compare
ABI39_RS17320 -1.6 -2.3 YhcH/YjgK/YiaL family protein compare
ABI39_RS11635 -1.6 -1.9 NUDIX hydrolase compare
ABI39_RS06220 -1.5 -8.6 glycosyltransferase family 2 protein compare
ABI39_RS14220 -1.5 -5.9 glycogen debranching enzyme N-terminal domain-containing protein compare
ABI39_RS17780 -1.5 -8.8 HesA/MoeB/ThiF family protein compare
ABI39_RS06235 -1.5 -5.2 UDP-galactopyranose mutase compare
ABI39_RS18740 -1.5 -5.7 ATP-binding protein compare
ABI39_RS14245 -1.5 -9.1 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS11650 -1.5 -7.0 galactokinase compare
ABI39_RS11485 -1.5 -4.5 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS20395 -1.5 -2.9 DedA family protein compare
ABI39_RS01325 -1.5 -8.3 phosphoenolpyruvate synthase compare
ABI39_RS02350 -1.5 -5.3 ABC transporter permease compare
ABI39_RS02285 -1.5 -2.5 DNA mismatch repair endonuclease MutL compare
ABI39_RS05765 -1.4 -2.2 DUF4294 domain-containing protein compare
ABI39_RS10085 -1.4 -3.8 enoyl-ACP reductase compare
ABI39_RS20355 -1.4 -10.2 carboxypeptidase-like regulatory domain-containing protein compare
ABI39_RS10105 -1.4 -4.9 lipoyl synthase compare
ABI39_RS02355 -1.4 -4.9 ABC transporter ATP-binding protein compare
ABI39_RS06585 -1.4 -10.6 response regulator compare
ABI39_RS14255 -1.4 -3.8 DUF452 family protein compare
ABI39_RS08850 -1.4 -3.6 toprim domain-containing protein compare
ABI39_RS05795 -1.4 -5.0 hypothetical protein compare
ABI39_RS06060 -1.3 -3.6 S9 family peptidase compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Red Arabinan from sugar-beet; filtered in Phocaeicola dorei CL03T12C01

For carbon source Red Arabinan from sugar-beet; filtered across organisms