Experiment set3S283 for Escherichia coli ECRC98
Bas37
Group: phageMedia: LB_plus_SM_buffer + Phage (10 MOI)
Culturing: Ecoli_ECRC98_ML1, 48 well microplate, Aerobic, at 25 (C), shaken=double orbital, continuous, 205cpm
By: Lucas on 06/08/2025
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride, 100 mM Sodium Chloride, 4 mM Magnesium sulfate, 0.005 vol% Gelatin, 25 mM Tris hydrochloride
Specific Phenotypes
For 5 genes in this experiment
For phage Phage in Escherichia coli ECRC98
For phage Phage across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Deoxyribose and Deoxynucleoside Catabolism | 1 |
| Entner-Doudoroff Pathway | 1 |
| Pentose phosphate pathway | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Pentose phosphate pathway
- Puromycin biosynthesis
- Nucleotide sugars metabolism
- alpha-Linolenic acid metabolism
- Trinitrotoluene degradation
- Porphyrin and chlorophyll metabolism
- Carotenoid biosynthesis - General
- Alkaloid biosynthesis I
- Insect hormone biosynthesis
- Biosynthesis of alkaloids derived from histidine and purine
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| pentose phosphate pathway (oxidative branch) I | 3 | 3 | 1 |
| formaldehyde oxidation I | 6 | 3 | 1 |
| pentose phosphate pathway | 8 | 8 | 1 |
| Entner-Doudoroff pathway I | 9 | 9 | 1 |
| superpathway of glycolysis and the Entner-Doudoroff pathway | 17 | 17 | 1 |
| superpathway of glucose and xylose degradation | 17 | 17 | 1 |
| heterolactic fermentation | 18 | 16 | 1 |