Experiment set3S269 for Escherichia coli ECRC98

Compare to:

Control_ECRC98_WM

200 most important genes:

  gene name fitness t score description  
JDDGAC_14710 thrL -6.8 -3.8 thr operon leader peptide compare
JDDGAC_17290 metF -6.0 -8.3 methylenetetrahydrofolate reductase compare
JDDGAC_14700 thrB -5.8 -7.0 homoserine kinase compare
JDDGAC_14325 leuD -5.8 -4.0 3-isopropylmalate dehydratase small subunit compare
JDDGAC_24035 cysJ -5.4 -7.4 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
JDDGAC_14320 leuC1 -5.4 -9.0 3-isopropylmalate dehydratase large subunit 1 compare
JDDGAC_16935 purH -5.2 -10.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
JDDGAC_22595 metC -5.2 -8.0 cystathionine beta-lyase compare
JDDGAC_24890 pheA -5.2 -7.2 bifunctional chorismate mutase/prephenate dehydratase compare
JDDGAC_25875 purC -5.1 -4.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
JDDGAC_23100 serA -5.1 -8.6 phosphoglycerate dehydrogenase compare
JDDGAC_24895 -5.1 -1.7 Leader peptide of chorismate mutase-P-prephenate dehydratase compare
JDDGAC_14695 thrC -5.1 -6.7 threonine synthase compare
JDDGAC_14315 leuB -5.1 -8.5 3-isopropylmalate dehydrogenase compare
JDDGAC_14795 serB -4.9 -3.4 phosphoserine phosphatase compare
JDDGAC_18265 ilvE -4.8 -11.9 branched-chain-amino-acid transaminase compare
JDDGAC_18245 ilvC -4.7 -12.6 ketol-acid reductoisomerase compare
JDDGAC_24045 cysH -4.7 -7.9 phosphoadenosine phosphosulfate reductase compare
JDDGAC_11490 purK -4.7 -7.3 5-(carboxyamino)imidazole ribonucleotide synthase compare
JDDGAC_11350 cusR -4.7 -2.6 copper response regulator transcription factor CusR compare
JDDGAC_17300 metB -4.6 -8.9 cystathionine gamma-synthase compare
JDDGAC_25750 purN -4.6 -9.4 phosphoribosylglycinamide formyltransferase compare
JDDGAC_27740 -4.6 -1.5 regulator compare
JDDGAC_16900 metA -4.6 -5.4 homoserine O-succinyltransferase compare
JDDGAC_24885 tyrA -4.6 -11.0 bifunctional chorismate mutase/prephenate dehydrogenase compare
JDDGAC_05220 trpA -4.5 -3.1 tryptophan synthase subunit alpha compare
JDDGAC_09100 serC -4.5 -6.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
JDDGAC_24115 cysC -4.5 -9.5 Adenylyl-sulfate kinase compare
JDDGAC_28845 -4.4 -2.4 hypothetical protein compare
JDDGAC_14705 thrA -4.4 -12.0 bifunctional aspartate kinase/homoserine dehydrogenase I compare
JDDGAC_28060 zorO -4.4 -1.4 Small toxic protein ZorO compare
JDDGAC_10355 acrZ -4.3 -1.4 multidrug efflux pump accessory protein AcrZ compare
JDDGAC_04595 -4.3 -2.4 DUF551 domain-containing protein compare
JDDGAC_25755 purM -4.3 -7.9 Phosphoribosylformylglycinamidine cyclo-ligase compare
JDDGAC_18260 ilvD -4.3 -12.9 dihydroxy-acid dehydratase compare
JDDGAC_25410 yfgM -4.3 -2.3 ancillary SecYEG translocon subunit YfgM compare
JDDGAC_25435 guaB -4.2 -2.9 IMP dehydrogenase compare
JDDGAC_18255 ilvA -4.2 -6.9 threonine ammonia-lyase, biosynthetic compare
JDDGAC_09385 lrp -4.2 -2.9 leucine-responsive transcriptional regulator Lrp compare
JDDGAC_16940 purD -4.1 -9.3 Phosphoribosylamine--glycine ligase compare
JDDGAC_06555 ybcO -4.1 -1.3 Putative nuclease YbcO compare
JDDGAC_26745 yfcD -4.1 -2.2 NUDIX hydrolase YfcD compare
JDDGAC_21580 lptC -4.0 -1.6 LPS export ABC transporter periplasmic protein LptC compare
JDDGAC_11920 glnK -4.0 -2.2 P-II family nitrogen regulator compare
JDDGAC_27425 yeiL -4.0 -1.3 Regulatory protein YeiL compare
JDDGAC_11235 fepD -4.0 -2.7 ferrienterobactin ABC transporter permease compare
JDDGAC_13250 -3.9 -2.2 XRE family transcriptional regulator compare
JDDGAC_13940 dksA -3.9 -5.8 RNA polymerase-binding protein DksA compare
JDDGAC_05205 trpD -3.9 -3.8 bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD compare
JDDGAC_03800 dosP -3.9 -1.8 oxygen-sensing cyclic-di-GMP phosphodiesterase compare
JDDGAC_26575 aroC -3.9 -3.8 chorismate synthase compare
JDDGAC_11485 purE -3.9 -4.6 N5-carboxyaminoimidazole ribonucleotide mutase compare
JDDGAC_01065 yebO -3.9 -1.3 Uncharacterized protein YebO compare
JDDGAC_29165 -3.9 -1.2 toxin of the YeeV-YeeU toxin-antitoxin system compare
JDDGAC_08900 zapC -3.8 -2.3 cell division protein ZapC compare
JDDGAC_11265 fes -3.8 -2.6 enterobactin/ferric enterobactin esterase compare
JDDGAC_08560 nu1 -3.8 -3.7 Prophage Qin DNA packaging protein NU1-like protein compare
JDDGAC_05210 trpCF -3.8 -6.8 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
JDDGAC_00920 kdgA -3.7 -1.6 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
JDDGAC_20745 aroB -3.7 -3.6 3-dehydroquinate synthase compare
JDDGAC_25045 rseA -3.7 -2.6 anti-sigma-E factor RseA compare
JDDGAC_14270 rsmH -3.7 -2.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
JDDGAC_00440 insI1 -3.7 -2.5 IS30 family transposase compare
JDDGAC_14310 -3.7 -9.8 2-isopropylmalate synthase compare
JDDGAC_08035 lolD -3.6 -2.7 lipoprotein-releasing system ATP-binding protein LolD compare
JDDGAC_15475 argF -3.6 -8.5 ornithine carbamoyltransferase compare
JDDGAC_21185 aroE -3.6 -2.5 shikimate dehydrogenase compare
JDDGAC_15250 -3.6 -1.2 Orf compare
JDDGAC_03335 -3.6 -1.6 9-O-acetyl-N-acetylneuraminic acid deacetylase compare
JDDGAC_10200 -3.5 -4.2 hypothetical protein compare
JDDGAC_09095 aroA -3.5 -9.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
JDDGAC_25135 purL -3.5 -13.7 phosphoribosylformylglycinamidine synthase compare
JDDGAC_15675 cysQ -3.5 -5.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
JDDGAC_26675 purF -3.4 -9.3 amidophosphoribosyltransferase compare
JDDGAC_06145 prs -3.4 -1.9 ribose-phosphate diphosphokinase compare
JDDGAC_15560 cybC -3.4 -2.5 cytochrome b562 compare
JDDGAC_18760 tisB -3.4 -1.1 Small toxic protein TisB compare
JDDGAC_25690 -3.3 -2.1 acyltransferase compare
JDDGAC_06140 ispE -3.3 -1.5 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase compare
JDDGAC_28885 ninG -3.3 -2.1 Protein ninG compare
JDDGAC_21715 argG -3.3 -7.5 argininosuccinate synthase compare
JDDGAC_19040 sepL -3.3 -1.5 type III secretion system LEE gatekeeper SepL compare
JDDGAC_02145 rsxA -3.3 -1.5 electron transport complex subunit RsxA compare
JDDGAC_05215 trpB -3.2 -3.8 tryptophan synthase subunit beta compare
JDDGAC_01430 ynjF -3.2 -2.6 Inner membrane protein YnjF compare
JDDGAC_17200 argH -3.2 -7.9 argininosuccinate lyase compare
JDDGAC_28610 hisH -3.2 -3.3 imidazole glycerol phosphate synthase subunit HisH compare
JDDGAC_09000 gloC -3.2 -2.6 hydroxyacylglutathione hydrolase GloC compare
JDDGAC_29495 -3.1 -2.2 9-O-acetyl-N-acetylneuraminic acid deacetylase compare
JDDGAC_22885 yggS -3.1 -6.2 pyridoxal phosphate homeostasis protein compare
JDDGAC_07640 -3.1 -1.4 DNA-binding protein compare
JDDGAC_14430 rsmA -3.1 -2.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA compare
JDDGAC_22880 yggT -3.1 -1.4 osmotic shock tolerance protein YggT compare
JDDGAC_18250 ilvY -3.1 -4.9 HTH-type transcriptional activator IlvY compare
JDDGAC_12090 pgpA -3.0 -1.5 phosphatidylglycerophosphatase A compare
JDDGAC_28600 hisF -3.0 -1.4 Imidazole glycerol phosphate synthase subunit HisF compare
JDDGAC_24040 cysI -3.0 -6.7 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
JDDGAC_10810 nagB -3.0 -5.5 glucosamine-6-phosphate deaminase compare
JDDGAC_15900 miaA -2.9 -1.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
JDDGAC_01220 yoaG -2.9 -1.3 Protein YoaG compare
JDDGAC_15870 purA -2.9 -2.0 adenylosuccinate synthase compare
JDDGAC_05135 -2.9 -2.0 Protein, C-ter, truncated protein compare
JDDGAC_21505 gltD -2.9 -8.7 glutamate synthase subunit GltD compare
JDDGAC_23435 -2.9 -1.8 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
JDDGAC_11240 fepG -2.8 -2.8 iron-enterobactin ABC transporter permease compare
JDDGAC_07280 rne -2.8 -3.0 ribonuclease E compare
JDDGAC_21510 gltB -2.8 -13.1 glutamate synthase large subunit compare
JDDGAC_14540 carA -2.8 -6.9 carbamoyl phosphate synthase small subunit compare
JDDGAC_03315 -2.7 -1.2 hypothetical protein compare
JDDGAC_27065 yfaE -2.7 -1.2 ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE compare
JDDGAC_13105 -2.7 -4.3 Phage Mu small tail protein compare
JDDGAC_00635 yecJ -2.7 -1.1 Uncharacterized protein YecJ compare
JDDGAC_01600 yniA -2.6 -1.2 putative ketoamine kinase YniA compare
JDDGAC_17455 pfkA -2.6 -3.1 6-phosphofructokinase compare
JDDGAC_05500 -2.6 -2.2 hypothetical protein compare
JDDGAC_01570 cedA -2.6 -3.0 cell division activator CedA compare
JDDGAC_18600 -2.6 -1.1 hypothetical protein compare
JDDGAC_01260 yeaL -2.6 -1.7 UPF0756 membrane protein CKO_01811 compare
JDDGAC_27995 -2.6 -1.4 IS4 family transposase compare
JDDGAC_27880 -2.6 -1.2 Phage protein compare
JDDGAC_19280 rfaG -2.5 -6.1 Lipopolysaccharide core biosynthesis protein RfaG compare
JDDGAC_10465 tolA -2.5 -1.7 cell envelope integrity protein TolA compare
JDDGAC_20810 cysG -2.5 -7.4 siroheme synthase CysG compare
JDDGAC_28630 hisG -2.5 -3.8 ATP phosphoribosyltransferase compare
JDDGAC_01440 ynjD -2.5 -1.9 Uncharacterized ABC transporter ATP-binding protein YnjD compare
JDDGAC_05605 -2.5 -2.0 hypothetical protein compare
JDDGAC_28540 rfbE -2.5 -1.8 GDP-perosamine synthase RfbE/PerA compare
JDDGAC_14440 apaH -2.5 -1.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
JDDGAC_10575 odhB -2.5 -2.2 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
JDDGAC_27270 dsbE -2.5 -1.6 thiol:disulfide interchange protein DsbE compare
JDDGAC_22140 yqiM -2.4 -1.1 Protein YqiM compare
JDDGAC_10045 ybhB -2.4 -1.3 kinase inhibitor compare
JDDGAC_05200 trpE -2.4 -4.4 anthranilate synthase component I compare
JDDGAC_10390 gpmA -2.4 -3.9 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
JDDGAC_21190 yrdB -2.4 -2.8 Uncharacterized protein YrdB compare
JDDGAC_14535 carB -2.4 -9.3 carbamoyl-phosphate synthase large subunit compare
JDDGAC_28130 fimA -2.4 -2.1 Uncharacterized fimbrial-like protein YehD compare
JDDGAC_06530 -2.4 -2.3 lysozyme compare
JDDGAC_29940 -2.4 -1.5 Plasmid replication region DNA-binding N-term compare
JDDGAC_14305 leuL -2.4 -3.5 leu operon leader peptide compare
JDDGAC_12265 proC -2.3 -1.6 pyrroline-5-carboxylate reductase compare
JDDGAC_00375 fliZ -2.3 -2.3 flagella biosynthesis regulatory protein FliZ compare
JDDGAC_11035 lipB -2.3 -1.0 lipoyl(octanoyl) transferase LipB compare
JDDGAC_17205 -2.3 -4.1 acetylglutamate kinase compare
JDDGAC_25440 guaA -2.3 -1.6 glutamine-hydrolyzing GMP synthase compare
JDDGAC_10470 tolR -2.3 -5.8 colicin uptake protein TolR compare
JDDGAC_01205 dmlR -2.3 -1.4 DNA-binding transcriptional regulator DmlR compare
JDDGAC_09655 ybjH -2.3 -2.6 Uncharacterized protein YbjH compare
JDDGAC_23960 -2.3 -2.7 LemA family protein compare
JDDGAC_17655 yihT -2.3 -2.1 sulfofructosephosphate aldolase compare
JDDGAC_29975 sopA -2.2 -1.5 plasmid-partitioning protein SopA compare
JDDGAC_15395 -2.2 -1.0 XRE family transcriptional regulator compare
JDDGAC_17210 argC -2.2 -3.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
JDDGAC_29920 -2.2 -1.9 hypothetical protein compare
JDDGAC_04785 fnr -2.2 -1.7 fumarate/nitrate reduction transcriptional regulator Fnr compare
JDDGAC_01245 yeaO -2.2 -1.0 Uncharacterized protein YeaO compare
JDDGAC_02170 add -2.2 -1.3 adenosine deaminase compare
JDDGAC_26150 cysK -2.1 -5.6 cysteine synthase A compare
JDDGAC_11225 fepB -2.1 -3.3 ferrienterobactin ABC transporter periplasmic binding protein compare
JDDGAC_28615 hisB -2.1 -2.7 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
JDDGAC_10395 aroG -2.1 -4.4 3-deoxy-7-phosphoheptulonate synthase AroG compare
JDDGAC_13300 proB -2.1 -3.6 Glutamate 5-kinase compare
JDDGAC_13000 -2.1 -1.3 AAA family ATPase compare
JDDGAC_10170 -2.1 -1.0 recombinase RecA compare
JDDGAC_28590 wzzB -2.1 -6.4 LPS O-antigen chain length determinant protein WzzB compare
JDDGAC_11835 rsmS -2.1 -1.0 pleiotropic regulatory protein RsmS compare
JDDGAC_08005 ycdU -2.1 -1.8 Uncharacterized protein YcdU compare
JDDGAC_23070 meaB -2.1 -2.0 methylmalonyl Co-A mutase-associated GTPase MeaB compare
JDDGAC_07175 lpoB -2.1 -3.1 penicillin-binding protein activator LpoB compare
JDDGAC_28625 hisD -2.1 -6.0 Histidinol dehydrogenase compare
JDDGAC_30180 repA2 -2.0 -4.2 Replication regulatory protein repA2 compare
JDDGAC_22955 tkt -2.0 -2.4 transketolase compare
JDDGAC_29425 -2.0 -0.9 Prophage protein compare
JDDGAC_00520 -2.0 -2.1 Phage protein compare
JDDGAC_01295 yeaE -2.0 -1.8 methylglyoxal reductase YeaE compare
JDDGAC_04895 ycjR -2.0 -2.1 3-dehydro-D-guloside 4-epimerase compare
JDDGAC_24340 srlB -2.0 -1.1 PTS glucitol/sorbitol transporter subunit IIA compare
JDDGAC_06700 -2.0 -1.5 DUF4222 domain-containing protein compare
JDDGAC_13295 proA -2.0 -6.2 glutamate-5-semialdehyde dehydrogenase compare
JDDGAC_28670 yeeD -2.0 -1.3 Putative sulfur carrier protein YeeD compare
JDDGAC_05985 galU -2.0 -4.3 UTP--glucose-1-phosphate uridylyltransferase GalU compare
JDDGAC_21125 yhdN -1.9 -1.1 Uncharacterized protein YhdN compare
JDDGAC_09920 espX2 -1.9 -1.2 type III secretion system effector EspX2 compare
JDDGAC_28605 hisA -1.9 -1.5 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino]imidazole-4-carboxamide isomerase compare
JDDGAC_28835 -1.9 -2.6 hypothetical protein compare
JDDGAC_09900 ybiE -1.9 -2.0 Protein YbiE compare
JDDGAC_24160 rpoS -1.9 -9.0 RNA polymerase sigma factor RpoS compare
JDDGAC_29030 -1.9 -1.5 Putative prophage portal protein compare
JDDGAC_01815 ydiH -1.9 -1.4 Uncharacterized protein YdiH compare
JDDGAC_00910 zwf -1.9 -1.2 glucose-6-phosphate dehydrogenase compare
JDDGAC_00795 cmoB -1.9 -2.3 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
JDDGAC_28595 hisIE -1.9 -2.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
JDDGAC_17500 rhaT -1.8 -2.2 L-rhamnose/proton symporter RhaT compare
JDDGAC_18405 mnmG -1.8 -2.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
JDDGAC_12140 parD -1.8 -1.0 Antitoxin ParD compare
JDDGAC_28520 wcaA -1.8 -1.0 glycosyl transferase compare
JDDGAC_19320 rfaF -1.8 -1.2 ADP-heptose--LPS heptosyltransferase RfaF compare
JDDGAC_03615 yneJ -1.8 -1.7 Uncharacterized HTH-type transcriptional regulator YneJ compare
JDDGAC_27515 yeiS -1.8 -1.1 Uncharacterized protein YeiS compare
JDDGAC_18020 corA -1.8 -2.6 magnesium/cobalt transporter CorA compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC98 in no phage control experiments

For no phage control No phage across organisms