Experiment set3S264 for Escherichia coli ECRC98

Compare to:

Control_ECRC98

200 most important genes:

  gene name fitness t score description  
JDDGAC_25690 -3.8 -2.6 acyltransferase compare
JDDGAC_06430 -3.6 -1.3 phage tail protein compare
JDDGAC_00230 dsrB -3.5 -1.2 protein DsrB compare
JDDGAC_05530 -3.3 -1.9 hypothetical protein compare
JDDGAC_13120 -3.0 -1.5 DUF2635 domain-containing protein compare
JDDGAC_28600 hisF -3.0 -1.5 Imidazole glycerol phosphate synthase subunit HisF compare
JDDGAC_29980 sopA -2.9 -2.3 plasmid-partitioning protein SopA compare
JDDGAC_06645 -2.9 -2.4 hypothetical protein compare
JDDGAC_09995 moaC -2.8 -3.3 cyclic pyranopterin monophosphate synthase MoaC compare
JDDGAC_18405 mnmG -2.7 -3.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
JDDGAC_14420 surA -2.6 -3.3 peptidylprolyl isomerase SurA compare
JDDGAC_10765 ybfE -2.5 -3.8 LexA regulated protein compare
JDDGAC_00155 hprS -2.5 -1.6 two-component system sensor histidine kinase HprS compare
JDDGAC_25410 yfgM -2.5 -1.6 ancillary SecYEG translocon subunit YfgM compare
JDDGAC_15900 miaA -2.5 -2.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
JDDGAC_07260 yceD -2.5 -2.1 23S rRNA accumulation protein YceD compare
JDDGAC_10575 odhB -2.4 -2.8 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
JDDGAC_06230 fadR -2.4 -2.6 fatty acid metabolism transcriptional regulator FadR compare
JDDGAC_27425 yeiL -2.4 -1.1 Regulatory protein YeiL compare
JDDGAC_08095 -2.3 -1.4 hypothetical protein compare
JDDGAC_01205 dmlR -2.3 -1.5 DNA-binding transcriptional regulator DmlR compare
JDDGAC_14625 nhaA -2.3 -9.1 Na+/H+ antiporter NhaA compare
JDDGAC_14865 ytjA -2.2 -1.1 UPF0391 membrane protein YtjA compare
JDDGAC_08705 -2.2 -1.5 Rha family transcriptional regulator compare
JDDGAC_25440 guaA -2.2 -2.1 glutamine-hydrolyzing GMP synthase compare
JDDGAC_09000 gloC -2.2 -2.8 hydroxyacylglutathione hydrolase GloC compare
JDDGAC_00890 lpxM -2.1 -3.9 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
JDDGAC_17715 typA -2.1 -8.9 ribosome-dependent GTPase TypA compare
JDDGAC_05550 -2.1 -2.0 Uncharacterized protein gp11 compare
JDDGAC_07675 -2.1 -1.4 Oligogalacturonate-specific porin protein KdgM compare
JDDGAC_02130 rsxD -2.0 -3.8 electron transport complex subunit RsxD compare
JDDGAC_29495 -2.0 -2.4 9-O-acetyl-N-acetylneuraminic acid deacetylase compare
JDDGAC_13940 dksA -2.0 -6.8 RNA polymerase-binding protein DksA compare
JDDGAC_21580 lptC -1.9 -2.9 LPS export ABC transporter periplasmic protein LptC compare
JDDGAC_02000 mepH -1.9 -1.9 peptidoglycan DD-endopeptidase MepH compare
JDDGAC_15050 -1.9 -1.4 Putative transposase, YhgA-like compare
JDDGAC_10465 tolA -1.9 -2.2 cell envelope integrity protein TolA compare
JDDGAC_02135 rsxC -1.9 -3.5 electron transport complex subunit RsxC compare
JDDGAC_26485 Arg_trna -1.8 -2.6 tRNA-Arg(cct) compare
JDDGAC_13185 -1.8 -1.4 phage holin, lambda family compare
JDDGAC_06310 -1.8 -1.4 autotransporter outer membrane beta-barrel domain-containing protein compare
JDDGAC_03575 eamA -1.8 -3.7 O-acetylserine/cysteine exporter compare
JDDGAC_11390 tnp-ISAs1 -1.7 -1.9 ISAs1 family transposase compare
JDDGAC_22440 tolC -1.7 -7.1 outer membrane channel protein TolC compare
JDDGAC_26850 nuoK -1.7 -2.3 NADH-quinone oxidoreductase subunit NuoK compare
JDDGAC_15870 purA -1.7 -3.0 adenylosuccinate synthase compare
JDDGAC_17880 fre -1.7 -5.7 NAD(P)H-flavin reductase compare
JDDGAC_04830 wcaG -1.7 -2.5 NAD-dependent dehydratase compare
JDDGAC_26855 nuoL -1.7 -4.4 NADH-quinone oxidoreductase subunit L compare
JDDGAC_06145 prs -1.6 -1.4 ribose-phosphate diphosphokinase compare
JDDGAC_12090 pgpA -1.6 -2.0 phosphatidylglycerophosphatase A compare
JDDGAC_26820 nuoE -1.6 -1.9 NADH-quinone oxidoreductase subunit NuoE compare
JDDGAC_01035 proQ -1.6 -4.7 RNA chaperone ProQ compare
JDDGAC_02195 uidR -1.6 -2.0 DNA-binding transcriptional regulator UidR compare
JDDGAC_08350 gfcB -1.6 -0.8 Uncharacterized lipoprotein GfcB compare
JDDGAC_26805 nuoA -1.6 -2.3 NADH-quinone oxidoreductase subunit NuoA compare
JDDGAC_12240 ppnP -1.5 -2.4 pyrimidine/purine nucleoside phosphorylase compare
JDDGAC_00110 espJ -1.5 -1.5 type III secretion system effector ADP-ribosyltransferase EspJ compare
JDDGAC_00750 flhe -1.5 -1.7 flagellar protein FlhE compare
JDDGAC_17185 sthA -1.5 -5.2 Si-specific NAD(P)(+) transhydrogenase compare
JDDGAC_11580 allA -1.5 -1.7 ureidoglycolate lyase compare
JDDGAC_24800 rnfH -1.5 -2.1 RnfH family protein compare
JDDGAC_01060 yobH -1.5 -2.2 Uncharacterized protein YobH compare
JDDGAC_19185 rpoZ -1.5 -1.0 DNA-directed RNA polymerase subunit omega compare
JDDGAC_29165 -1.5 -0.9 toxin of the YeeV-YeeU toxin-antitoxin system compare
JDDGAC_14615 -1.5 -1.6 fimbrial family protein compare
JDDGAC_07155 ndh -1.5 -1.9 NADH-quinone dehydrogenase compare
JDDGAC_20745 aroB -1.5 -3.9 3-dehydroquinate synthase compare
JDDGAC_22955 tkt -1.4 -2.4 transketolase compare
JDDGAC_29175 yeeT -1.4 -1.2 Uncharacterized protein YeeT compare
JDDGAC_22870 rdgB -1.4 -1.8 XTP/dITP diphosphatase compare
JDDGAC_17425 yiiR -1.4 -2.6 Uncharacterized protein YiiR compare
JDDGAC_06155 ychH -1.4 -2.3 stress-induced protein YchH compare
JDDGAC_07885 ureA -1.4 -2.1 urease subunit gamma compare
JDDGAC_01440 ynjD -1.4 -1.5 Uncharacterized ABC transporter ATP-binding protein YnjD compare
JDDGAC_06140 ispE -1.4 -1.1 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase compare
JDDGAC_26865 nuoN -1.4 -3.3 NADH-quinone oxidoreductase subunit NuoN compare
JDDGAC_12265 proC -1.4 -2.1 pyrroline-5-carboxylate reductase compare
JDDGAC_05250 nleG -1.4 -1.2 T3SS effector E3 ubiquitin-protein ligase NleG compare
JDDGAC_28255 glpR -1.4 -2.9 transcriptional regulator compare
JDDGAC_01505 spy -1.4 -2.1 ATP-independent periplasmic protein-refolding chaperone Spy compare
JDDGAC_25065 lepA -1.4 -1.8 translation elongation factor 4 compare
JDDGAC_19040 sepL -1.4 -1.3 type III secretion system LEE gatekeeper SepL compare
JDDGAC_14075 acnB -1.4 -1.1 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
JDDGAC_13250 -1.4 -1.3 XRE family transcriptional regulator compare
JDDGAC_29975 sopA -1.4 -3.1 plasmid-partitioning protein SopA compare
JDDGAC_08355 gfcC -1.4 -5.3 Uncharacterized protein GfcC compare
JDDGAC_20665 ompR_G63V -1.4 -2.9 two-component system response regulator OmpR compare
JDDGAC_04540 -1.4 -1.4 ORF6N domain-containing protein compare
JDDGAC_24450 emrR -1.3 -1.7 multidrug efflux transporter EmrAB transcriptional repressor EmrR compare
JDDGAC_05820 eCs1768 -1.3 -1.1 DNA-binding protein compare
JDDGAC_10870 miaB -1.3 -6.3 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
JDDGAC_06130 hemA -1.3 -2.1 glutamyl-tRNA reductase compare
JDDGAC_28960 -1.3 -3.0 lysis protein compare
JDDGAC_06045 -1.3 -1.4 hypothetical protein compare
JDDGAC_07485 csgC -1.3 -2.0 curli assembly protein CsgC compare
JDDGAC_02120 rsxE -1.3 -3.0 electron transport complex subunit RsxE compare
JDDGAC_03285 -1.3 -1.2 DUF968 domain-containing protein compare
JDDGAC_00935 yebF -1.3 -0.9 Protein YebF compare
JDDGAC_02140 rsxB -1.3 -1.3 electron transport complex subunit RsxB compare
JDDGAC_15570 yjgA -1.3 -4.3 ribosome-associated protein compare
JDDGAC_23980 ygcW -1.3 -1.3 Uncharacterized oxidoreductase YgcW compare
JDDGAC_10540 -1.3 -1.1 DUF4387 domain-containing protein compare
JDDGAC_18070 cyaA -1.3 -1.1 class I adenylate cyclase compare
JDDGAC_08575 -1.3 -1.1 lysozyme compare
JDDGAC_01245 yeaO -1.3 -1.0 Uncharacterized protein YeaO compare
JDDGAC_27995 -1.3 -1.0 IS4 family transposase compare
JDDGAC_07825 -1.3 -0.7 Membrane protein compare
JDDGAC_28390 asmA -1.2 -4.0 outer membrane assembly protein AsmA compare
JDDGAC_24630 xerD -1.2 -1.9 site-specific integrase compare
JDDGAC_05525 -1.2 -0.6 host nuclease inhibitor protein compare
JDDGAC_18035 uvrD -1.2 -4.6 DNA helicase II compare
JDDGAC_05065 rnb -1.2 -3.3 exoribonuclease II compare
JDDGAC_21730 nusA -1.2 -4.0 Transcription termination/antitermination protein NusA compare
JDDGAC_06690 -1.2 -1.6 hypothetical protein compare
JDDGAC_06700 -1.2 -1.4 DUF4222 domain-containing protein compare
JDDGAC_16510 soxS_A12S -1.2 -2.6 regulatory protein SoxS compare
JDDGAC_04170 ydcA -1.2 -1.4 Uncharacterized protein YdcA compare
JDDGAC_29035 -1.2 -0.8 head-tail connector protein compare
JDDGAC_13015 -1.2 -1.6 Phage-associated protein compare
JDDGAC_08365 gfcE -1.2 -4.2 Putative polysaccharide export protein GfcE compare
JDDGAC_28195 yegW -1.2 -1.9 Uncharacterized HTH-type transcriptional regulator YegW compare
JDDGAC_12025 cyoC -1.2 -2.1 cytochrome o ubiquinol oxidase subunit III compare
JDDGAC_17910 tatA -1.2 -1.0 Sec-independent protein translocase subunit TatA compare
JDDGAC_01550 chbR -1.1 -1.0 transcriptional regulator ChbR compare
JDDGAC_00130 zinT -1.1 -1.7 metal-binding protein ZinT compare
JDDGAC_25435 guaB -1.1 -4.2 IMP dehydrogenase compare
JDDGAC_04725 ynaL -1.1 -0.9 Protein YnaL compare
JDDGAC_25905 yffB -1.1 -1.4 ArsC family reductase compare
JDDGAC_28890 -1.1 -1.3 Serine/threonine-protein phosphatase compare
JDDGAC_06075 chaB -1.1 -1.4 putative cation transport regulator ChaB compare
JDDGAC_10170 -1.1 -1.6 recombinase RecA compare
JDDGAC_28775 -1.1 -1.4 hypothetical protein compare
JDDGAC_01920 -1.1 -1.2 FAD/NAD(P)-binding protein compare
JDDGAC_26810 nuoB -1.1 -1.8 NADH-quinone oxidoreductase subunit NuoB compare
JDDGAC_07480 -1.1 -1.0 Uncharacterized protein YmdA compare
JDDGAC_00375 fliZ -1.1 -1.8 flagella biosynthesis regulatory protein FliZ compare
JDDGAC_29110 -1.1 -1.6 host specificity protein J compare
JDDGAC_20070 pitA -1.1 -3.3 inorganic phosphate transporter PitA compare
JDDGAC_27900 -1.1 -1.6 DNA breaking-rejoining protein compare
JDDGAC_25025 srmB -1.1 -4.0 ATP-dependent RNA helicase SrmB compare
JDDGAC_07225 fabF -1.1 -2.5 beta-ketoacyl-ACP synthase II compare
JDDGAC_05805 -1.1 -1.1 hypothetical protein compare
JDDGAC_27725 -1.1 -1.4 cell division inhibitor protein compare
JDDGAC_19880 gadB -1.1 -1.8 glutamate decarboxylase compare
JDDGAC_28935 -1.1 -1.7 sialate O-acetylesterase compare
JDDGAC_02065 slyA -1.1 -1.8 transcriptional regulator SlyA compare
JDDGAC_04780 ogt -1.1 -0.8 methylated-DNA--[protein]-cysteine S-methyltransferase compare
JDDGAC_00910 zwf -1.1 -1.2 glucose-6-phosphate dehydrogenase compare
JDDGAC_00440 insI1 -1.1 -2.0 IS30 family transposase compare
JDDGAC_01460 ydjZ -1.0 -2.8 TVP38/TMEM64 family inner membrane protein YdjZ compare
JDDGAC_23135 zapA -1.0 -3.0 cell division protein ZapA compare
JDDGAC_27360 mepS -1.0 -2.8 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
JDDGAC_10165 -1.0 -1.3 DNA breaking-rejoining protein compare
JDDGAC_03900 espR1 -1.0 -1.4 T3SS effector leucine-rich repeat protein EspR1 compare
JDDGAC_06530 -1.0 -0.9 lysozyme compare
JDDGAC_11290 hokE -1.0 -1.6 type I toxin-antitoxin system toxin HokE compare
JDDGAC_07765 citE -1.0 -3.3 citrate lyase subunit beta compare
JDDGAC_04285 ldhA -1.0 -2.6 D-lactate dehydrogenase compare
JDDGAC_06345 tfaX -1.0 -1.8 Protein TfaX compare
JDDGAC_26875 elaD -1.0 -1.0 ElaD/SseL family deubiquitinase compare
JDDGAC_02300 mdtI -1.0 -1.2 multidrug/spermidine efflux SMR transporter subunit MdtI compare
JDDGAC_28280 yegP -1.0 -3.3 UPF0339 protein YegP compare
JDDGAC_06615 nudJ -1.0 -1.0 phosphatase NudJ compare
JDDGAC_17900 tatC -1.0 -2.3 Sec-independent protein translocase subunit TatC compare
JDDGAC_23875 truC -1.0 -2.5 tRNA pseudouridine(65) synthase TruC compare
JDDGAC_21265 yhdV -1.0 -2.1 Uncharacterized protein YhdV compare
JDDGAC_19455 -1.0 -1.7 Immunity protein 57 compare
JDDGAC_13890 -1.0 -1.2 Protein YadX compare
JDDGAC_09710 dgcI -0.9 -1.3 putative diguanylate cyclase DgcI compare
JDDGAC_04850 tyrR -0.9 -0.8 transcriptional regulator TyrR compare
JDDGAC_10460 tolB -0.9 -2.8 Tol-Pal system protein TolB compare
JDDGAC_13985 fimA -0.9 -3.3 fimbrial-like protein compare
JDDGAC_10570 sucC -0.9 -2.2 ADP-forming succinate--CoA ligase subunit beta compare
JDDGAC_16520 -0.9 -1.9 Uncharacterized protein YjcB compare
JDDGAC_03170 -0.9 -1.0 Putative bacterial toxin ydaT compare
JDDGAC_27730 -0.9 -1.8 SIR2-like domain-containing protein compare
JDDGAC_07690 -0.9 -1.1 IS150 conserved protein InsB compare
JDDGAC_27715 bet -0.9 -1.1 phage recombination protein Bet compare
JDDGAC_05645 -0.9 -1.0 tRNA-Xxx compare
JDDGAC_25855 gcvR -0.9 -2.2 glycine cleavage system transcriptional repressor compare
JDDGAC_03950 yddH -0.9 -1.5 Uncharacterized protein YddH compare
JDDGAC_18290 maoP -0.9 -2.6 macrodomain Ori organization protein MaoP compare
JDDGAC_09600 ybjN -0.9 -1.4 Uncharacterized protein YbjN compare
JDDGAC_21655 yhbE -0.9 -3.4 Uncharacterized inner membrane transporter YhbE compare
JDDGAC_25045 rseA -0.9 -1.9 anti-sigma-E factor RseA compare
JDDGAC_21520 arcB -0.9 -2.4 aerobic respiration two-component sensor histidine kinase ArcB compare
JDDGAC_17655 yihT -0.9 -1.3 sulfofructosephosphate aldolase compare
JDDGAC_02040 ydhF -0.9 -1.0 Oxidoreductase YdhF compare
JDDGAC_01755 ydiP -0.9 -1.5 Uncharacterized HTH-type transcriptional regulator YdiP compare
JDDGAC_08375 etk -0.9 -4.4 tyrosine-protein kinase compare
JDDGAC_08295 cbpM -0.9 -0.7 chaperone modulator CbpM compare
JDDGAC_10565 sucD -0.9 -1.7 succinate--CoA ligase subunit alpha compare
JDDGAC_05625 -0.9 -1.2 Bacteriophage Mu, Gp27 compare
JDDGAC_28855 -0.9 -1.2 recombination protein NinB compare
JDDGAC_28850 -0.9 -1.5 restriction alleviation protein, Lar family compare
JDDGAC_00180 yedJ -0.9 -2.3 phosphohydrolase compare
JDDGAC_03315 -0.9 -0.7 hypothetical protein compare
JDDGAC_23205 fldB -0.9 -3.9 flavodoxin FldB compare
JDDGAC_01210 leuE -0.9 -1.6 leucine efflux protein LeuE compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC98 in no phage control experiments

For no phage control No phage across organisms