Experiment set3S263 for Escherichia coli ECRC98

Compare to:

Control_ECRC98

200 most important genes:

  gene name fitness t score description  
JDDGAC_11835 rsmS -4.5 -1.6 pleiotropic regulatory protein RsmS compare
JDDGAC_29980 sopA -4.4 -2.1 plasmid-partitioning protein SopA compare
JDDGAC_06565 ybcN -4.1 -1.4 Uncharacterized protein YbcN compare
JDDGAC_06305 minE -3.9 -1.4 cell division topological specificity factor MinE compare
JDDGAC_14865 ytjA -3.8 -1.3 UPF0391 membrane protein YtjA compare
JDDGAC_01065 yebO -3.7 -1.3 Uncharacterized protein YebO compare
JDDGAC_10285 -3.7 -1.3 Cell division protein ZapA compare
JDDGAC_25690 -3.5 -2.4 acyltransferase compare
JDDGAC_00890 lpxM -3.4 -3.3 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
JDDGAC_27045 -3.3 -1.1 hypothetical protein compare
JDDGAC_15900 miaA -3.2 -2.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
JDDGAC_06675 -3.1 -2.0 hypothetical protein compare
JDDGAC_14075 acnB -3.1 -2.2 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
JDDGAC_11390 tnp-ISAs1 -3.0 -2.0 ISAs1 family transposase compare
JDDGAC_26875 elaD -3.0 -2.0 ElaD/SseL family deubiquitinase compare
JDDGAC_04835 -2.8 -2.2 Murein peptide amidase A compare
JDDGAC_06135 lolB -2.8 -1.8 lipoprotein insertase outer membrane protein LolB compare
JDDGAC_06310 -2.7 -2.1 autotransporter outer membrane beta-barrel domain-containing protein compare
JDDGAC_21580 lptC -2.7 -3.0 LPS export ABC transporter periplasmic protein LptC compare
JDDGAC_00145 hiuH -2.7 -0.9 hydroxyisourate hydrolase compare
JDDGAC_14440 apaH -2.7 -1.8 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
JDDGAC_18070 cyaA -2.6 -2.4 class I adenylate cyclase compare
JDDGAC_05730 ymfQ -2.6 -1.7 Bacteriophage Mu-like, Gp48 compare
JDDGAC_26340 ypdK -2.5 -1.2 membrane protein YpdK compare
JDDGAC_04130 ydcH -2.4 -1.2 Uncharacterized protein YdcH compare
JDDGAC_14420 surA -2.4 -3.1 peptidylprolyl isomerase SurA compare
JDDGAC_00950 yebE -2.3 -2.6 Inner membrane protein YebE compare
JDDGAC_14625 nhaA -2.2 -7.7 Na+/H+ antiporter NhaA compare
JDDGAC_16385 ytcA -2.1 -1.0 Uncharacterized protein YtcA compare
JDDGAC_10570 sucC -2.1 -3.5 ADP-forming succinate--CoA ligase subunit beta compare
JDDGAC_03860 yddM -2.1 -1.7 HigA family addiction module antitoxin compare
JDDGAC_28760 kil -2.1 -1.0 Protein kil compare
JDDGAC_02040 ydhF -2.1 -1.7 Oxidoreductase YdhF compare
JDDGAC_02275 ydgH -2.0 -2.7 DUF1471 domain-containing protein compare
JDDGAC_05175 rluB -2.0 -3.6 23S rRNA pseudouridine(2605) synthase RluB compare
JDDGAC_05250 nleG -2.0 -1.2 T3SS effector E3 ubiquitin-protein ligase NleG compare
JDDGAC_11975 -2.0 -2.7 Lon protease compare
JDDGAC_04820 -2.0 -1.7 Peptidase-S15 domain-containing protein compare
JDDGAC_25440 guaA -2.0 -1.9 glutamine-hydrolyzing GMP synthase compare
JDDGAC_06530 -2.0 -2.8 lysozyme compare
JDDGAC_06300 minD -1.9 -1.5 septum site-determining protein MinD compare
JDDGAC_06625 hflD -1.9 -2.9 high frequency lysogenization protein HflD compare
JDDGAC_07825 -1.9 -0.9 Membrane protein compare
JDDGAC_28060 zorO -1.9 -1.1 Small toxic protein ZorO compare
JDDGAC_00120 -1.8 -1.5 tRNA-Xxx compare
JDDGAC_02310 ydgU -1.8 -1.2 Uncharacterized protein YdgU compare
JDDGAC_04955 pspA -1.8 -2.7 phage shock protein PspA compare
JDDGAC_07785 tnpB -1.8 -1.4 IS66 family insertion sequence element accessory protein TnpB compare
JDDGAC_06700 -1.8 -1.7 DUF4222 domain-containing protein compare
JDDGAC_28600 hisF -1.8 -1.1 Imidazole glycerol phosphate synthase subunit HisF compare
JDDGAC_10690 yafF -1.7 -1.3 ISAs1 family transposase compare
JDDGAC_03900 espR1 -1.7 -1.8 T3SS effector leucine-rich repeat protein EspR1 compare
JDDGAC_17390 zapB -1.7 -2.0 septal ring assembly protein ZapB compare
JDDGAC_02470 -1.7 -2.1 DNA-binding protein compare
JDDGAC_28830 -1.7 -3.5 Endonuclease compare
JDDGAC_07460 mdoG -1.6 -3.8 glucans biosynthesis protein MdoG compare
JDDGAC_09990 moaD -1.6 -1.0 molybdopterin synthase sulfur carrier subunit compare
JDDGAC_00350 fliT -1.6 -1.7 flagella biosynthesis regulatory protein FliT compare
JDDGAC_27220 napG -1.6 -1.6 ferredoxin-type protein NapG compare
JDDGAC_09985 moaE -1.6 -1.7 molybdopterin synthase catalytic subunit MoaE compare
JDDGAC_07225 fabF -1.6 -2.4 beta-ketoacyl-ACP synthase II compare
JDDGAC_01395 ydjA -1.6 -1.5 NAD(P)H nitroreductase compare
JDDGAC_06025 narJ -1.6 -0.8 nitrate reductase molybdenum cofactor assembly chaperone compare
JDDGAC_10460 tolB -1.6 -4.1 Tol-Pal system protein TolB compare
JDDGAC_27195 -1.6 -1.5 hypothetical protein compare
JDDGAC_17880 fre -1.6 -5.2 NAD(P)H-flavin reductase compare
JDDGAC_10465 tolA -1.5 -1.9 cell envelope integrity protein TolA compare
JDDGAC_17905 tatB -1.5 -1.5 Sec-independent protein translocase protein TatB compare
JDDGAC_10765 ybfE -1.5 -2.3 LexA regulated protein compare
JDDGAC_02140 rsxB -1.5 -1.2 electron transport complex subunit RsxB compare
JDDGAC_21730 nusA -1.5 -4.6 Transcription termination/antitermination protein NusA compare
JDDGAC_17715 typA -1.5 -7.7 ribosome-dependent GTPase TypA compare
JDDGAC_08350 gfcB -1.5 -1.3 Uncharacterized lipoprotein GfcB compare
JDDGAC_13940 dksA -1.5 -6.1 RNA polymerase-binding protein DksA compare
JDDGAC_06140 ispE -1.5 -1.1 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase compare
JDDGAC_06975 rusA -1.4 -0.9 Endodeoxyribonuclease RusA compare
JDDGAC_10475 tolQ -1.4 -1.5 Tol-Pal system protein TolQ compare
JDDGAC_26745 yfcD -1.4 -1.2 NUDIX hydrolase YfcD compare
JDDGAC_02120 rsxE -1.4 -3.2 electron transport complex subunit RsxE compare
JDDGAC_08130 cadC1 -1.4 -0.7 transcriptional regulator compare
JDDGAC_18760 tisB -1.4 -0.8 Small toxic protein TisB compare
JDDGAC_20745 aroB -1.4 -3.8 3-dehydroquinate synthase compare
JDDGAC_01440 ynjD -1.4 -1.0 Uncharacterized ABC transporter ATP-binding protein YnjD compare
JDDGAC_20930 yheO -1.3 -1.8 Uncharacterized protein YheO compare
JDDGAC_00840 ruvC -1.3 -1.6 crossover junction endodeoxyribonuclease RuvC compare
JDDGAC_06075 chaB -1.3 -1.6 putative cation transport regulator ChaB compare
JDDGAC_27410 psuK -1.3 -0.9 pseudouridine kinase compare
JDDGAC_03730 ydeQ -1.3 -0.8 Uncharacterized fimbrial-like protein YdeQ compare
JDDGAC_06120 prmC -1.3 -1.3 peptide chain release factor N(5)-glutamine methyltransferase compare
JDDGAC_01205 dmlR -1.3 -1.0 DNA-binding transcriptional regulator DmlR compare
JDDGAC_25085 recO -1.3 -3.2 DNA repair protein RecO compare
JDDGAC_25065 lepA -1.3 -2.1 translation elongation factor 4 compare
JDDGAC_24800 rnfH -1.3 -2.1 RnfH family protein compare
JDDGAC_29165 -1.3 -0.8 toxin of the YeeV-YeeU toxin-antitoxin system compare
JDDGAC_12025 cyoC -1.3 -2.4 cytochrome o ubiquinol oxidase subunit III compare
JDDGAC_21520 arcB -1.3 -3.6 aerobic respiration two-component sensor histidine kinase ArcB compare
JDDGAC_01150 yoaB -1.3 -1.5 RutC family protein YoaB compare
JDDGAC_03645 tam -1.3 -1.3 trans-aconitate 2-methyltransferase compare
JDDGAC_08445 lomR -1.3 -0.8 Ail/Lom family protein compare
JDDGAC_02220 -1.3 -0.8 Putative outer membrane porin protein compare
JDDGAC_11470 cysS -1.3 -0.6 cysteine--tRNA ligase compare
JDDGAC_23205 fldB -1.3 -3.9 flavodoxin FldB compare
JDDGAC_06515 -1.3 -1.2 DUF1398 domain-containing protein compare
JDDGAC_26485 Arg_trna -1.3 -2.0 tRNA-Arg(cct) compare
JDDGAC_00235 rcsA -1.2 -1.1 transcriptional regulator RcsA compare
JDDGAC_20700 igaA -1.2 -1.6 intracellular growth attenuator protein IgaA compare
JDDGAC_05555 -1.2 -2.1 Mu prophage protein compare
JDDGAC_02170 add -1.2 -1.0 adenosine deaminase compare
JDDGAC_10575 odhB -1.2 -1.2 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
JDDGAC_12090 pgpA -1.2 -1.7 phosphatidylglycerophosphatase A compare
JDDGAC_00270 fliL -1.2 -1.5 flagellar basal body-associated protein FliL compare
JDDGAC_14270 rsmH -1.2 -0.9 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
JDDGAC_11290 hokE -1.2 -2.2 type I toxin-antitoxin system toxin HokE compare
JDDGAC_08870 pqiC -1.2 -2.1 membrane integrity-associated transporter subunit PqiC compare
JDDGAC_05990 rssB -1.2 -2.4 two-component system response regulator RssB compare
JDDGAC_00635 yecJ -1.2 -1.0 Uncharacterized protein YecJ compare
JDDGAC_12985 -1.2 -2.0 Ogr/Delta-like zinc finger compare
JDDGAC_13335 ykfJ -1.2 -1.8 Putative uncharacterized protein YkfJ compare
JDDGAC_24185 pphB -1.1 -2.1 protein-serine/threonine phosphatase compare
JDDGAC_08850 matP -1.1 -2.7 macrodomain Ter protein MatP compare
JDDGAC_26010 eutA -1.1 -2.7 ethanolamine ammonia-lyase reactivating factor EutA compare
JDDGAC_08705 -1.1 -1.0 Rha family transcriptional regulator compare
JDDGAC_07970 -1.1 -1.5 hypothetical protein compare
JDDGAC_05735 -1.1 -3.7 phage tail protein compare
JDDGAC_02130 rsxD -1.1 -3.1 electron transport complex subunit RsxD compare
JDDGAC_02000 mepH -1.1 -1.4 peptidoglycan DD-endopeptidase MepH compare
JDDGAC_28675 sbcB -1.1 -2.8 exodeoxyribonuclease I compare
JDDGAC_21780 deaD -1.1 -3.1 ATP-dependent RNA helicase DeaD compare
JDDGAC_10540 -1.1 -0.8 DUF4387 domain-containing protein compare
JDDGAC_00440 insI1 -1.1 -1.8 IS30 family transposase compare
JDDGAC_28390 asmA -1.1 -3.5 outer membrane assembly protein AsmA compare
JDDGAC_02095 pdxY -1.1 -2.7 pyridoxal kinase PdxY compare
JDDGAC_18405 mnmG -1.1 -1.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
JDDGAC_15075 yjiL -1.1 -1.9 Uncharacterized protein YjiL compare
JDDGAC_03210 -1.1 -0.6 hypothetical protein compare
JDDGAC_06165 ychF -1.1 -1.3 redox-regulated ATPase YchF compare
JDDGAC_19215 rph -1.1 -3.1 ribonuclease PH compare
JDDGAC_22440 tolC -1.1 -4.9 outer membrane channel protein TolC compare
JDDGAC_15570 yjgA -1.1 -4.1 ribosome-associated protein compare
JDDGAC_07490 csgA -1.1 -1.9 curlin major subunit CsgA compare
JDDGAC_18020 corA -1.1 -2.3 magnesium/cobalt transporter CorA compare
JDDGAC_15620 chpB -1.1 -1.4 type II toxin-antitoxin system ChpB family toxin compare
JDDGAC_09600 ybjN -1.1 -2.0 Uncharacterized protein YbjN compare
JDDGAC_09955 ybhQ -1.0 -1.6 Inner membrane protein YbhQ compare
JDDGAC_11240 fepG -1.0 -1.7 iron-enterobactin ABC transporter permease compare
JDDGAC_00640 ftnB -1.0 -2.7 non-heme ferritin-like protein compare
JDDGAC_26805 nuoA -1.0 -1.4 NADH-quinone oxidoreductase subunit NuoA compare
JDDGAC_07485 csgC -1.0 -0.9 curli assembly protein CsgC compare
JDDGAC_14430 rsmA -1.0 -1.5 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA compare
JDDGAC_00615 yecH -1.0 -1.1 Uncharacterized protein YecH compare
JDDGAC_08030 -1.0 -1.8 Uncharacterized function compare
JDDGAC_27785 rusA -1.0 -0.6 crossover junction endodeoxyribonuclease RusA compare
JDDGAC_07030 -1.0 -1.7 DNA-binding protein compare
JDDGAC_13385 dinJ -1.0 -1.3 type II toxin-antitoxin system antitoxin DinJ compare
JDDGAC_05625 -1.0 -1.6 Bacteriophage Mu, Gp27 compare
JDDGAC_06125 prfA -1.0 -1.0 peptide chain release factor 1 compare
JDDGAC_23980 ygcW -1.0 -1.3 Uncharacterized oxidoreductase YgcW compare
JDDGAC_26530 fimA -1.0 -2.5 fimbrial protein compare
JDDGAC_23145 pepP -1.0 -3.8 Xaa-Pro aminopeptidase compare
JDDGAC_06575 emrE -1.0 -1.0 multidrug efflux SMR transporter EmrE compare
JDDGAC_00910 zwf -1.0 -1.1 glucose-6-phosphate dehydrogenase compare
JDDGAC_11425 fimZ -1.0 -1.9 fimbria biosynthesis transcriptional regulator FimZ compare
JDDGAC_20555 glpD -1.0 -2.6 glycerol-3-phosphate dehydrogenase compare
JDDGAC_12115 nrdR -1.0 -0.9 transcriptional regulator NrdR compare
JDDGAC_09290 oRF81 -1.0 -0.6 Uncharacterized protein in GpA 5'region compare
JDDGAC_06130 hemA -1.0 -1.3 glutamyl-tRNA reductase compare
JDDGAC_22945 speB -1.0 -2.7 agmatinase compare
JDDGAC_25045 rseA -1.0 -2.5 anti-sigma-E factor RseA compare
JDDGAC_00260 fliN -0.9 -1.5 flagellar motor switch protein FliN compare
JDDGAC_25845 hyfA -0.9 -1.2 hydrogenase 4 subunit HyfA compare
JDDGAC_08355 gfcC -0.9 -4.1 Uncharacterized protein GfcC compare
JDDGAC_03685 lsrK -0.9 -2.4 autoinducer-2 kinase compare
JDDGAC_07000 -0.9 -0.8 DUF551 domain-containing protein compare
JDDGAC_09835 rhtA -0.9 -1.9 threonine/homoserine exporter RhtA compare
JDDGAC_01035 proQ -0.9 -2.9 RNA chaperone ProQ compare
JDDGAC_08145 dgcT -0.9 -0.9 putative diguanylate cyclase DgcT compare
JDDGAC_08375 etk -0.9 -5.2 tyrosine-protein kinase compare
JDDGAC_04540 -0.9 -1.0 ORF6N domain-containing protein compare
JDDGAC_28265 -0.9 -1.6 Uncharacterized protein YegR compare
JDDGAC_07140 bhsA -0.9 -1.4 multiple stress resistance protein BhsA compare
JDDGAC_29885 tnp-IS911 -0.9 -2.0 IS3 family IS911 transposase compare
JDDGAC_08725 ydfA -0.9 -1.4 Uncharacterized protein YdfA compare
JDDGAC_27165 apbE -0.9 -3.4 FAD:protein FMN transferase ApbE compare
JDDGAC_06520 bor -0.9 -0.6 serum resistance lipoprotein Bor compare
JDDGAC_01585 ybcI -0.9 -1.4 metal-dependent hydrolase compare
JDDGAC_00675 flhD -0.9 -0.9 flagellar transcriptional regulator FlhD compare
JDDGAC_28980 -0.9 -0.9 HNH endonuclease compare
JDDGAC_25060 rseC -0.9 -4.1 SoxR-reducing system protein RseC compare
JDDGAC_05720 gp46 -0.9 -1.2 Phage GP46 family protein compare
JDDGAC_05870 -0.9 -1.5 exonuclease compare
JDDGAC_24915 rluD -0.9 -3.9 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
JDDGAC_13185 -0.9 -1.4 phage holin, lambda family compare
JDDGAC_29110 -0.9 -1.9 host specificity protein J compare
JDDGAC_12165 queA -0.9 -2.3 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
JDDGAC_04630 ydaU -0.9 -0.9 Uncharacterized protein YdaU compare
JDDGAC_00590 -0.9 -1.3 Putative transmembrane protein compare
JDDGAC_29155 yeeX -0.9 -1.4 DUF496 domain-containing protein compare
JDDGAC_08360 gfcD -0.9 -3.4 Uncharacterized lipoprotein GfcD compare
JDDGAC_05740 -0.9 -0.7 phage tail protein compare
JDDGAC_30055 yubL -0.8 -1.6 UPF0401 protein YubL compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC98 in no phage control experiments

For no phage control No phage across organisms