Experiment set3S258 for Escherichia coli ECRC98

Compare to:

Control_ECRC98_WM

Group: no phage control
Media: Whole_milk_plus_SM_buffer + No phage
Culturing: Ecoli_ECRC98_ML1, 48 well microplate, Aerobic, at 25 (C), shaken=double orbital, continuous, 205cpm
By: Lucas on 06/08/2025

Specific Phenotypes

For 1 genes in this experiment

For no phage control No phage in Escherichia coli ECRC98

For no phage control No phage across organisms

SEED Subsystems

Subsystem #Specific
Lysine Biosynthesis DAP Pathway 1
Methionine Biosynthesis 1
Threonine and Homoserine Biosynthesis 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
L-homoserine biosynthesis 3 3 2
superpathway of L-threonine biosynthesis 6 6 2
superpathway of L-homoserine and L-methionine biosynthesis 8 8 2
dipicolinate biosynthesis 4 3 1
L-methionine biosynthesis IV 4 2 1
spermidine biosynthesis II 4 2 1
superpathway of S-adenosyl-L-methionine biosynthesis 9 9 2
superpathway of L-methionine biosynthesis (transsulfuration) 9 9 2
ectoine biosynthesis 5 2 1
superpathway of L-methionine biosynthesis (by sulfhydrylation) 12 10 2
norspermidine biosynthesis 6 2 1
superpathway of L-isoleucine biosynthesis I 13 13 2
L-lysine biosynthesis VI 7 6 1
L-lysine biosynthesis III 7 6 1
3-dehydroquinate biosynthesis II (archaea) 7 3 1
cremeomycin biosynthesis 7 2 1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis II 15 13 2
grixazone biosynthesis 8 2 1
superpathway of polyamine biosynthesis III 8 2 1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis I 18 18 2
L-lysine biosynthesis I 9 9 1
L-lysine biosynthesis II 9 6 1
chorismate biosynthesis II (archaea) 12 8 1
aspartate superpathway 25 24 2
platensimycin biosynthesis 26 6 1