Experiment set3S254 for Escherichia coli ECRC98

Compare to:

WM_Bas58

200 most important genes:

  gene name fitness t score description  
JDDGAC_27740 -5.1 -1.5 regulator compare
JDDGAC_23565 -4.6 -1.3 hypothetical protein compare
JDDGAC_21580 lptC -4.6 -1.7 LPS export ABC transporter periplasmic protein LptC compare
JDDGAC_08445 lomR -4.4 -1.3 Ail/Lom family protein compare
JDDGAC_25690 -4.2 -2.4 acyltransferase compare
JDDGAC_15900 miaA -3.6 -2.0 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
JDDGAC_15525 mgtL -3.6 -1.5 mgtA leader peptide compare
JDDGAC_15870 purA -3.5 -2.4 adenylosuccinate synthase compare
JDDGAC_11470 cysS -3.4 -1.0 cysteine--tRNA ligase compare
JDDGAC_10205 -3.3 -1.3 Putative bacteriophage protein (Gene 65) compare
JDDGAC_14440 apaH -3.2 -2.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
JDDGAC_27065 yfaE -3.2 -1.3 ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE compare
JDDGAC_00545 marR -3.1 -2.4 MarR family transcriptional regulator compare
JDDGAC_06125 prfA -3.0 -1.7 peptide chain release factor 1 compare
JDDGAC_27425 yeiL -2.8 -1.1 Regulatory protein YeiL compare
JDDGAC_28010 yehS -2.7 -1.5 Uncharacterized protein YehS compare
JDDGAC_30080 flmC -2.7 -0.8 Protein FlmC compare
JDDGAC_15395 -2.7 -1.1 XRE family transcriptional regulator compare
JDDGAC_29165 -2.7 -1.1 toxin of the YeeV-YeeU toxin-antitoxin system compare
JDDGAC_24675 -2.6 -1.1 hypothetical protein compare
JDDGAC_16590 -2.6 -1.9 DinI-like protein Z3916/ECs3483 compare
JDDGAC_25440 guaA -2.5 -2.4 glutamine-hydrolyzing GMP synthase compare
JDDGAC_11485 purE -2.5 -3.4 N5-carboxyaminoimidazole ribonucleotide mutase compare
JDDGAC_20510 yhgO -2.4 -1.9 Protein YhgO compare
JDDGAC_18405 mnmG -2.4 -3.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
JDDGAC_14890 holD -2.3 -0.9 DNA polymerase III subunit psi compare
JDDGAC_20740 aroK -2.3 -3.5 shikimate kinase AroK compare
JDDGAC_20700 igaA -2.3 -1.8 intracellular growth attenuator protein IgaA compare
JDDGAC_29980 sopA -2.2 -0.9 plasmid-partitioning protein SopA compare
JDDGAC_02170 add -2.2 -1.6 adenosine deaminase compare
JDDGAC_05985 galU -2.2 -2.7 UTP--glucose-1-phosphate uridylyltransferase GalU compare
JDDGAC_14795 serB -2.2 -3.3 phosphoserine phosphatase compare
JDDGAC_15675 cysQ -2.1 -4.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
JDDGAC_29035 -2.1 -1.0 head-tail connector protein compare
JDDGAC_10470 tolR -2.1 -3.5 colicin uptake protein TolR compare
JDDGAC_23100 serA -2.1 -7.4 phosphoglycerate dehydrogenase compare
JDDGAC_03900 espR1 -2.0 -2.0 T3SS effector leucine-rich repeat protein EspR1 compare
JDDGAC_06135 lolB -2.0 -1.4 lipoprotein insertase outer membrane protein LolB compare
JDDGAC_20355 -2.0 -2.4 DUF1778 domain-containing protein compare
JDDGAC_18945 grlA -2.0 -1.6 type III secretion system LEE transcriptional regulator GrlA compare
JDDGAC_10355 acrZ -1.9 -1.1 multidrug efflux pump accessory protein AcrZ compare
JDDGAC_25045 rseA -1.9 -2.8 anti-sigma-E factor RseA compare
JDDGAC_05065 rnb -1.9 -3.0 exoribonuclease II compare
JDDGAC_24035 cysJ -1.9 -8.6 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
JDDGAC_06425 -1.9 -1.6 phage minor tail protein L compare
JDDGAC_06130 hemA -1.9 -3.9 glutamyl-tRNA reductase compare
JDDGAC_09815 mntS -1.9 -1.7 manganase accumulation protein MntS compare
JDDGAC_01035 proQ -1.8 -3.3 RNA chaperone ProQ compare
JDDGAC_02140 rsxB -1.8 -1.3 electron transport complex subunit RsxB compare
JDDGAC_09385 lrp -1.8 -2.8 leucine-responsive transcriptional regulator Lrp compare
JDDGAC_07825 -1.8 -0.9 Membrane protein compare
JDDGAC_19185 rpoZ -1.8 -0.9 DNA-directed RNA polymerase subunit omega compare
JDDGAC_09810 mntR -1.8 -2.1 manganese-binding transcriptional regulator MntR compare
JDDGAC_00770 cutC -1.8 -1.8 copper homeostasis protein CutC compare
JDDGAC_22545 ftsP -1.8 -1.9 cell division protein FtsP compare
JDDGAC_21770 nlpI -1.8 -7.0 lipoprotein NlpI compare
JDDGAC_24045 cysH -1.7 -3.4 phosphoadenosine phosphosulfate reductase compare
JDDGAC_03640 uxaB -1.7 -2.8 tagaturonate reductase compare
JDDGAC_06140 ispE -1.7 -1.3 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase compare
JDDGAC_29975 sopA -1.7 -1.6 plasmid-partitioning protein SopA compare
JDDGAC_30200 putA1 -1.6 -1.3 CopG family transcriptional regulator compare
JDDGAC_19320 rfaF -1.6 -1.5 ADP-heptose--LPS heptosyltransferase RfaF compare
JDDGAC_13185 -1.6 -1.6 phage holin, lambda family compare
JDDGAC_28905 Arg_trna -1.6 -0.8 tRNA-Arg(tcg) compare
JDDGAC_01920 -1.6 -1.2 FAD/NAD(P)-binding protein compare
JDDGAC_15040 yjiS -1.6 -1.6 DUF1127 domain-containing protein compare
JDDGAC_26035 eutK -1.6 -2.7 ethanolamine utilization microcompartment protein EutK compare
JDDGAC_03285 -1.6 -1.4 DUF968 domain-containing protein compare
JDDGAC_05500 -1.6 -2.3 hypothetical protein compare
JDDGAC_11060 crcB -1.6 -1.3 fluoride efflux transporter CrcB compare
JDDGAC_10540 -1.6 -0.9 DUF4387 domain-containing protein compare
JDDGAC_26485 Arg_trna -1.6 -2.2 tRNA-Arg(cct) compare
JDDGAC_25875 purC -1.6 -4.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
JDDGAC_17455 pfkA -1.5 -2.5 6-phosphofructokinase compare
JDDGAC_06300 minD -1.5 -0.8 septum site-determining protein MinD compare
JDDGAC_05220 trpA -1.5 -2.0 tryptophan synthase subunit alpha compare
JDDGAC_03775 gadB -1.5 -1.6 glutamate decarboxylase compare
JDDGAC_00825 nudB -1.5 -1.0 dihydroneopterin triphosphate diphosphatase compare
JDDGAC_15050 -1.5 -1.1 Putative transposase, YhgA-like compare
JDDGAC_28885 ninG -1.5 -1.7 Protein ninG compare
JDDGAC_29155 yeeX -1.5 -1.8 DUF496 domain-containing protein compare
JDDGAC_11365 -1.5 -2.0 Uncharacterized conserved protein compare
JDDGAC_00250 fliP -1.5 -1.4 flagellar type III secretion system pore protein FliP compare
JDDGAC_29425 -1.5 -0.8 Prophage protein compare
JDDGAC_10690 yafF -1.5 -1.2 ISAs1 family transposase compare
JDDGAC_23430 escR -1.4 -1.5 EscR/YscR/HrcR family type III secretion system export apparatus protein compare
JDDGAC_08430 -1.4 -1.7 hypothetical protein compare
JDDGAC_19280 rfaG -1.4 -3.7 Lipopolysaccharide core biosynthesis protein RfaG compare
JDDGAC_02315 asr -1.4 -0.8 acid resistance repetitive basic protein Asr compare
JDDGAC_14590 espX1 -1.4 -1.4 type III secretion system effector EspX1 compare
JDDGAC_03845 sra -1.4 -1.7 stationary-phase-induced ribosome-associated protein compare
JDDGAC_01535 chbB -1.4 -1.6 PTS N,N'-diacetylchitobiose transporter subunit IIB compare
JDDGAC_26675 purF -1.4 -5.5 amidophosphoribosyltransferase compare
JDDGAC_09900 ybiE -1.4 -1.3 Protein YbiE compare
JDDGAC_15560 cybC -1.4 -1.1 cytochrome b562 compare
JDDGAC_21780 deaD -1.4 -2.5 ATP-dependent RNA helicase DeaD compare
JDDGAC_11390 tnp-ISAs1 -1.4 -1.0 ISAs1 family transposase compare
JDDGAC_11350 cusR -1.3 -1.2 copper response regulator transcription factor CusR compare
JDDGAC_23140 ygfB -1.3 -1.6 UPF0149 family protein YgfB compare
JDDGAC_24340 srlB -1.3 -1.2 PTS glucitol/sorbitol transporter subunit IIA compare
JDDGAC_03800 dosP -1.3 -1.6 oxygen-sensing cyclic-di-GMP phosphodiesterase compare
JDDGAC_02135 rsxC -1.3 -3.2 electron transport complex subunit RsxC compare
JDDGAC_02130 rsxD -1.3 -4.6 electron transport complex subunit RsxD compare
JDDGAC_05735 -1.3 -2.1 phage tail protein compare
JDDGAC_30225 -1.3 -2.6 cytochrome b562 family protein compare
JDDGAC_06305 minE -1.3 -0.8 cell division topological specificity factor MinE compare
JDDGAC_10225 -1.3 -0.8 DUF3927 domain-containing protein compare
JDDGAC_30195 repA -1.3 -0.9 incFII family plasmid replication initiator RepA compare
JDDGAC_16940 purD -1.3 -4.9 Phosphoribosylamine--glycine ligase compare
JDDGAC_03180 -1.3 -1.3 replication protein compare
JDDGAC_06155 ychH -1.3 -1.4 stress-induced protein YchH compare
JDDGAC_07660 tnp-IS1 -1.2 -1.4 IS1 family transposase compare
JDDGAC_16935 purH -1.2 -6.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
JDDGAC_25025 srmB -1.2 -4.3 ATP-dependent RNA helicase SrmB compare
JDDGAC_19895 gadW -1.2 -4.2 acid resistance transcriptional activator GadW compare
JDDGAC_02300 mdtI -1.2 -0.9 multidrug/spermidine efflux SMR transporter subunit MdtI compare
JDDGAC_04240 ynbB -1.2 -3.0 Uncharacterized protein YnbB compare
JDDGAC_15150 uxuR -1.2 -2.6 Uxu operon transcriptional regulator compare
JDDGAC_10960 ybeQ -1.2 -1.1 Sel1-repeat-containing protein YbeQ compare
JDDGAC_11580 allA -1.2 -1.1 ureidoglycolate lyase compare
JDDGAC_23435 -1.2 -1.6 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
JDDGAC_07445 yceK -1.2 -1.3 YceK/YidQ family lipoprotein compare
JDDGAC_04295 ydbJ -1.2 -1.2 Uncharacterized protein YdbJ compare
JDDGAC_00520 -1.2 -1.2 Phage protein compare
JDDGAC_25905 yffB -1.2 -1.3 ArsC family reductase compare
JDDGAC_10570 sucC -1.2 -2.0 ADP-forming succinate--CoA ligase subunit beta compare
JDDGAC_27730 -1.2 -1.9 SIR2-like domain-containing protein compare
JDDGAC_08900 zapC -1.2 -2.4 cell division protein ZapC compare
JDDGAC_24160 rpoS -1.2 -8.6 RNA polymerase sigma factor RpoS compare
JDDGAC_06620 mnmA -1.2 -0.9 tRNA 2-thiouridine(34) synthase MnmA compare
JDDGAC_01065 yebO -1.2 -0.7 Uncharacterized protein YebO compare
JDDGAC_07480 -1.2 -1.1 Uncharacterized protein YmdA compare
JDDGAC_24115 cysC -1.2 -5.4 Adenylyl-sulfate kinase compare
JDDGAC_25750 purN -1.2 -5.3 phosphoribosylglycinamide formyltransferase compare
JDDGAC_29110 -1.2 -1.6 host specificity protein J compare
JDDGAC_09100 serC -1.1 -4.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
JDDGAC_08935 -1.1 -1.5 PapC-N domain-containing protein compare
JDDGAC_05785 -1.1 -1.2 Hypothetical rem protein compare
JDDGAC_26340 ypdK -1.1 -0.8 membrane protein YpdK compare
JDDGAC_10870 miaB -1.1 -4.9 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
JDDGAC_25435 guaB -1.1 -3.6 IMP dehydrogenase compare
JDDGAC_14285 fruL -1.1 -1.1 Putative fruR/shl operon leader peptide compare
JDDGAC_14420 surA -1.1 -1.6 peptidylprolyl isomerase SurA compare
JDDGAC_28685 -1.1 -0.9 AlpA family transcriptional regulator compare
JDDGAC_17910 tatA -1.1 -0.7 Sec-independent protein translocase subunit TatA compare
JDDGAC_06145 prs -1.1 -0.7 ribose-phosphate diphosphokinase compare
JDDGAC_24040 cysI -1.1 -4.7 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
JDDGAC_01425 nudG -1.1 -1.3 CTP pyrophosphohydrolase compare
JDDGAC_10275 -1.1 -1.2 DUF1382 domain-containing protein compare
JDDGAC_26745 yfcD -1.1 -1.1 NUDIX hydrolase YfcD compare
JDDGAC_03880 yddG -1.1 -1.2 aromatic amino acid efflux DMT transporter YddG compare
JDDGAC_28255 glpR -1.1 -2.8 transcriptional regulator compare
JDDGAC_00640 ftnB -1.1 -2.2 non-heme ferritin-like protein compare
JDDGAC_03315 -1.1 -0.7 hypothetical protein compare
JDDGAC_28445 wcaE -1.1 -0.6 colanic acid biosynthesis glycosyltransferase WcaE compare
JDDGAC_16125 ghoT -1.1 -1.0 type V toxin-antitoxin system toxin GhoT compare
JDDGAC_25680 -1.1 -2.7 hypothetical protein compare
JDDGAC_04680 racC -1.1 -0.6 Protein RacC compare
JDDGAC_12025 cyoC -1.1 -1.6 cytochrome o ubiquinol oxidase subunit III compare
JDDGAC_25755 purM -1.1 -4.1 Phosphoribosylformylglycinamidine cyclo-ligase compare
JDDGAC_11975 -1.1 -2.2 Lon protease compare
JDDGAC_11490 purK -1.0 -3.7 5-(carboxyamino)imidazole ribonucleotide synthase compare
JDDGAC_18930 escU -1.0 -2.0 type III secretion system LEE export apparatus switch protein EscU compare
JDDGAC_08845 ompA -1.0 -2.3 outer membrane protein A compare
JDDGAC_03630 yneG -1.0 -1.1 Uncharacterized protein YneG compare
JDDGAC_22870 rdgB -1.0 -1.5 XTP/dITP diphosphatase compare
JDDGAC_04935 pspE -1.0 -1.6 thiosulfate sulfurtransferase PspE compare
JDDGAC_00750 flhe -1.0 -0.7 flagellar protein FlhE compare
JDDGAC_11000 rsfS -1.0 -1.0 ribosome silencing factor compare
JDDGAC_13545 -1.0 -1.6 hypothetical protein compare
JDDGAC_24805 bamE -1.0 -2.4 outer membrane protein assembly factor BamE compare
JDDGAC_08725 ydfA -1.0 -1.9 Uncharacterized protein YdfA compare
JDDGAC_00400 sdiA -1.0 -3.1 transcriptional regulator SdiA compare
JDDGAC_09680 gstB -1.0 -1.3 glutathione S-transferase GstB compare
JDDGAC_09745 gsiA -1.0 -1.8 glutathione ABC transporter ATP-binding protein GsiA compare
JDDGAC_25135 purL -1.0 -6.1 phosphoribosylformylglycinamidine synthase compare
JDDGAC_12300 yaiY -1.0 -1.5 Inner membrane protein YaiY compare
JDDGAC_24915 rluD -1.0 -3.2 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
JDDGAC_25845 hyfA -1.0 -1.5 hydrogenase 4 subunit HyfA compare
JDDGAC_09540 -1.0 -0.6 hypothetical protein compare
JDDGAC_20470 gntK -1.0 -3.1 gluconokinase compare
JDDGAC_21655 yhbE -1.0 -2.9 Uncharacterized inner membrane transporter YhbE compare
JDDGAC_14305 leuL -1.0 -2.9 leu operon leader peptide compare
JDDGAC_04865 ycjW -1.0 -1.3 Uncharacterized HTH-type transcriptional regulator YcjW compare
JDDGAC_03870 fdnH -1.0 -2.2 formate dehydrogenase N subunit beta compare
JDDGAC_05620 -1.0 -1.0 hypothetical protein compare
JDDGAC_17355 ftsN -1.0 -2.5 cell division protein FtsN compare
JDDGAC_15570 yjgA -1.0 -3.6 ribosome-associated protein compare
JDDGAC_26555 fimA -1.0 -1.9 fimbrial protein compare
JDDGAC_10120 -1.0 -1.2 phage tail tape measure protein compare
JDDGAC_01040 prc -1.0 -3.1 carboxy terminal-processing peptidase compare
JDDGAC_24435 luxS -1.0 -2.0 S-ribosylhomocysteine lyase compare
JDDGAC_05690 -0.9 -1.1 phage tail protein compare
JDDGAC_01595 yniB -0.9 -1.9 Uncharacterized protein YniB compare
JDDGAC_28130 fimA -0.9 -1.7 Uncharacterized fimbrial-like protein YehD compare
JDDGAC_25410 yfgM -0.9 -1.2 ancillary SecYEG translocon subunit YfgM compare
JDDGAC_09510 -0.9 -2.0 hypothetical protein compare
JDDGAC_22875 yggU -0.9 -2.1 DUF167 domain-containing protein compare
JDDGAC_13245 ymfL -0.9 -2.1 Uncharacterized protein YmfL compare
JDDGAC_13525 hcp -0.9 -1.5 type VI secretion system tube protein Hcp compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC98 in phage experiments

For phage Phage across organisms