Experiment set3S253 for Escherichia coli ECRC98

Compare to:

WM_Bas58

200 most important genes:

  gene name fitness t score description  
JDDGAC_21580 lptC -4.6 -1.6 LPS export ABC transporter periplasmic protein LptC compare
JDDGAC_20740 aroK -4.5 -3.1 shikimate kinase AroK compare
JDDGAC_27425 yeiL -4.5 -1.2 Regulatory protein YeiL compare
JDDGAC_24675 -4.4 -1.2 hypothetical protein compare
JDDGAC_19185 rpoZ -4.2 -1.2 DNA-directed RNA polymerase subunit omega compare
JDDGAC_17905 tatB -4.2 -2.0 Sec-independent protein translocase protein TatB compare
JDDGAC_25690 -4.1 -2.3 acyltransferase compare
JDDGAC_15250 -4.1 -1.1 Orf compare
JDDGAC_06125 prfA -3.9 -1.5 peptide chain release factor 1 compare
JDDGAC_18070 cyaA -3.7 -2.2 class I adenylate cyclase compare
JDDGAC_15900 miaA -3.6 -2.0 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
JDDGAC_15870 purA -3.5 -2.4 adenylosuccinate synthase compare
JDDGAC_27740 -3.4 -1.3 regulator compare
JDDGAC_11470 cysS -3.4 -0.9 cysteine--tRNA ligase compare
JDDGAC_11390 tnp-ISAs1 -3.3 -1.7 ISAs1 family transposase compare
JDDGAC_28060 zorO -3.2 -1.2 Small toxic protein ZorO compare
JDDGAC_05985 galU -3.1 -6.1 UTP--glucose-1-phosphate uridylyltransferase GalU compare
JDDGAC_06295 minC -3.0 -1.7 septum site-determining protein MinC compare
JDDGAC_00480 cysE -2.7 -2.3 serine acetyltransferase compare
JDDGAC_14760 trpR -2.7 -1.3 trp operon repressor compare
JDDGAC_14440 apaH -2.6 -2.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
JDDGAC_29165 -2.6 -1.0 toxin of the YeeV-YeeU toxin-antitoxin system compare
JDDGAC_25980 eutM -2.6 -3.5 ethanolamine utilization microcompartment protein EutM compare
JDDGAC_06700 -2.6 -2.0 DUF4222 domain-containing protein compare
JDDGAC_29980 sopA -2.5 -1.0 plasmid-partitioning protein SopA compare
JDDGAC_19320 rfaF -2.4 -1.6 ADP-heptose--LPS heptosyltransferase RfaF compare
JDDGAC_17455 pfkA -2.4 -3.1 6-phosphofructokinase compare
JDDGAC_13250 -2.4 -1.4 XRE family transcriptional regulator compare
JDDGAC_14890 holD -2.3 -0.9 DNA polymerase III subunit psi compare
JDDGAC_29395 eCs1768 -2.3 -1.7 phage replisome organizer compare
JDDGAC_02485 -2.2 -2.6 DUF977 domain-containing protein compare
JDDGAC_28290 baeS -2.2 -1.5 two-component system sensor histidine kinase BaeS compare
JDDGAC_04565 -2.2 -1.4 DUF1364 domain-containing protein compare
JDDGAC_03175 eCs1768 -2.2 -1.0 DNA-binding protein compare
JDDGAC_15560 cybC -2.1 -1.7 cytochrome b562 compare
JDDGAC_08190 efeU -2.1 -1.3 Ferrous iron permease EfeU compare
JDDGAC_28700 -2.1 -1.6 DUF551 domain-containing protein compare
JDDGAC_05740 -2.1 -1.3 phage tail protein compare
JDDGAC_03670 lsrC -2.1 -1.5 autoinducer 2 ABC transporter permease LsrC compare
JDDGAC_04240 ynbB -2.0 -3.3 Uncharacterized protein YnbB compare
JDDGAC_08180 efeB -2.0 -2.9 iron uptake transporter deferrochelatase/peroxidase subunit compare
JDDGAC_29030 -2.0 -1.9 Putative prophage portal protein compare
JDDGAC_08845 ompA -2.0 -4.4 outer membrane protein A compare
JDDGAC_00615 yecH -2.0 -1.4 Uncharacterized protein YecH compare
JDDGAC_10355 acrZ -1.9 -1.1 multidrug efflux pump accessory protein AcrZ compare
JDDGAC_10690 yafF -1.9 -1.3 ISAs1 family transposase compare
JDDGAC_08445 lomR -1.9 -0.9 Ail/Lom family protein compare
JDDGAC_21780 deaD -1.9 -3.1 ATP-dependent RNA helicase DeaD compare
JDDGAC_27410 psuK -1.9 -1.0 pseudouridine kinase compare
JDDGAC_11035 lipB -1.9 -1.0 lipoyl(octanoyl) transferase LipB compare
JDDGAC_14285 fruL -1.9 -1.4 Putative fruR/shl operon leader peptide compare
JDDGAC_06890 -1.8 -0.9 HNH endonuclease compare
JDDGAC_03575 eamA -1.8 -2.9 O-acetylserine/cysteine exporter compare
JDDGAC_10045 ybhB -1.8 -2.6 kinase inhibitor compare
JDDGAC_25165 glnB -1.8 -2.0 nitrogen regulatory protein P-II compare
JDDGAC_07825 -1.8 -0.8 Membrane protein compare
JDDGAC_15675 cysQ -1.8 -4.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
JDDGAC_14795 serB -1.8 -3.0 phosphoserine phosphatase compare
JDDGAC_25045 rseA -1.8 -2.7 anti-sigma-E factor RseA compare
JDDGAC_11060 crcB -1.8 -1.4 fluoride efflux transporter CrcB compare
JDDGAC_01205 dmlR -1.8 -1.4 DNA-binding transcriptional regulator DmlR compare
JDDGAC_25410 yfgM -1.7 -1.4 ancillary SecYEG translocon subunit YfgM compare
JDDGAC_16130 ghoS -1.7 -2.0 type V toxin-antitoxin system endoribonuclease antitoxin GhoS compare
JDDGAC_06275 ycgL -1.7 -1.6 Protein YcgL compare
JDDGAC_06180 -1.7 -1.7 PTS-dependent dihydroxyacetone kinase compare
JDDGAC_09835 rhtA -1.7 -1.9 threonine/homoserine exporter RhtA compare
JDDGAC_09990 moaD -1.7 -0.9 molybdopterin synthase sulfur carrier subunit compare
JDDGAC_25245 hcaC -1.7 -2.9 bifunctional 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit compare
JDDGAC_05175 rluB -1.6 -2.8 23S rRNA pseudouridine(2605) synthase RluB compare
JDDGAC_24915 rluD -1.6 -4.2 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
JDDGAC_24045 cysH -1.6 -5.0 phosphoadenosine phosphosulfate reductase compare
JDDGAC_04170 ydcA -1.6 -2.1 Uncharacterized protein YdcA compare
JDDGAC_09435 cspD -1.6 -1.1 cold shock-like protein CspD compare
JDDGAC_09100 serC -1.6 -6.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
JDDGAC_19215 rph -1.6 -3.7 ribonuclease PH compare
JDDGAC_07485 csgC -1.6 -1.0 curli assembly protein CsgC compare
JDDGAC_10620 -1.6 -2.9 Fimbrial protein compare
JDDGAC_06120 prmC -1.6 -1.4 peptide chain release factor N(5)-glutamine methyltransferase compare
JDDGAC_14075 acnB -1.5 -1.6 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
JDDGAC_10570 sucC -1.5 -2.1 ADP-forming succinate--CoA ligase subunit beta compare
JDDGAC_27515 yeiS -1.5 -1.2 Uncharacterized protein YeiS compare
JDDGAC_30195 repA -1.5 -1.0 incFII family plasmid replication initiator RepA compare
JDDGAC_25750 purN -1.5 -4.5 phosphoribosylglycinamide formyltransferase compare
JDDGAC_09890 ybiJ -1.5 -1.4 DUF1471 domain-containing protein compare
JDDGAC_04270 ydbL -1.5 -1.2 DUF1318 domain-containing protein compare
JDDGAC_21770 nlpI -1.5 -5.7 lipoprotein NlpI compare
JDDGAC_03630 yneG -1.5 -1.3 Uncharacterized protein YneG compare
JDDGAC_19765 -1.5 -1.3 Type I toxin-antitoxin system toxin Ldr family protein compare
JDDGAC_03800 dosP -1.5 -1.3 oxygen-sensing cyclic-di-GMP phosphodiesterase compare
JDDGAC_06130 hemA -1.5 -2.7 glutamyl-tRNA reductase compare
JDDGAC_15050 -1.4 -1.0 Putative transposase, YhgA-like compare
JDDGAC_25435 guaB -1.4 -4.0 IMP dehydrogenase compare
JDDGAC_00375 fliZ -1.4 -2.1 flagella biosynthesis regulatory protein FliZ compare
JDDGAC_15570 yjgA -1.4 -5.0 ribosome-associated protein compare
JDDGAC_03210 -1.4 -0.7 hypothetical protein compare
JDDGAC_10870 miaB -1.4 -5.8 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
JDDGAC_06145 prs -1.4 -1.4 ribose-phosphate diphosphokinase compare
JDDGAC_23495 ygeK -1.4 -1.5 Uncharacterized response regulatory protein YgeK compare
JDDGAC_05065 rnb -1.4 -2.4 exoribonuclease II compare
JDDGAC_25135 purL -1.4 -8.7 phosphoribosylformylglycinamidine synthase compare
JDDGAC_09385 lrp -1.4 -2.7 leucine-responsive transcriptional regulator Lrp compare
JDDGAC_13125 -1.4 -2.5 Putative bacteriophage protein compare
JDDGAC_25440 guaA -1.3 -1.4 glutamine-hydrolyzing GMP synthase compare
JDDGAC_12115 nrdR -1.3 -1.0 transcriptional regulator NrdR compare
JDDGAC_16970 hupA -1.3 -2.9 DNA-binding protein HU-alpha compare
JDDGAC_05780 -1.3 -1.4 hypothetical protein compare
JDDGAC_23455 csgD -1.3 -2.6 LuxR family transcriptional regulator compare
JDDGAC_02120 rsxE -1.3 -2.4 electron transport complex subunit RsxE compare
JDDGAC_03775 gadB -1.3 -1.0 glutamate decarboxylase compare
JDDGAC_01245 yeaO -1.3 -0.9 Uncharacterized protein YeaO compare
JDDGAC_27880 -1.3 -1.0 Phage protein compare
JDDGAC_01040 prc -1.3 -4.0 carboxy terminal-processing peptidase compare
JDDGAC_08130 cadC1 -1.3 -0.6 transcriptional regulator compare
JDDGAC_25755 purM -1.3 -5.7 Phosphoribosylformylglycinamidine cyclo-ligase compare
JDDGAC_26675 purF -1.3 -5.3 amidophosphoribosyltransferase compare
JDDGAC_01035 proQ -1.3 -2.6 RNA chaperone ProQ compare
JDDGAC_27790 ylcG -1.3 -1.7 Uncharacterized protein YlcG compare
JDDGAC_11975 -1.3 -2.5 Lon protease compare
JDDGAC_05730 ymfQ -1.3 -1.4 Bacteriophage Mu-like, Gp48 compare
JDDGAC_16940 purD -1.2 -3.7 Phosphoribosylamine--glycine ligase compare
JDDGAC_29155 yeeX -1.2 -1.4 DUF496 domain-containing protein compare
JDDGAC_01150 yoaB -1.2 -1.6 RutC family protein YoaB compare
JDDGAC_25845 hyfA -1.2 -1.7 hydrogenase 4 subunit HyfA compare
JDDGAC_00520 -1.2 -1.2 Phage protein compare
JDDGAC_00525 -1.2 -1.9 derepression protein compare
JDDGAC_06250 umuD -1.2 -2.5 Protein UmuD compare
JDDGAC_09625 ybjM -1.2 -3.0 Inner membrane protein YbjM compare
JDDGAC_23240 yqfH -1.2 -1.0 Protein YqfH compare
JDDGAC_27900 -1.2 -1.4 DNA breaking-rejoining protein compare
JDDGAC_02040 ydhF -1.2 -1.2 Oxidoreductase YdhF compare
JDDGAC_03650 lsrG -1.2 -1.4 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
JDDGAC_21490 nanK -1.2 -1.5 N-acetylmannosamine kinase compare
JDDGAC_22870 rdgB -1.2 -1.7 XTP/dITP diphosphatase compare
JDDGAC_07785 tnpB -1.2 -1.4 IS66 family insertion sequence element accessory protein TnpB compare
JDDGAC_30240 insA -1.2 -1.6 Transposase InsA compare
JDDGAC_02375 ynfC -1.2 -1.3 YnfC family lipoprotein compare
JDDGAC_05895 yciA -1.2 -1.8 acyl-CoA thioester hydrolase YciA compare
JDDGAC_03640 uxaB -1.2 -1.5 tagaturonate reductase compare
JDDGAC_01010 yebV -1.2 -2.1 Uncharacterized protein YebV compare
JDDGAC_24800 rnfH -1.1 -2.8 RnfH family protein compare
JDDGAC_17355 ftsN -1.1 -3.6 cell division protein FtsN compare
JDDGAC_01015 rsmF -1.1 -1.3 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
JDDGAC_24035 cysJ -1.1 -5.1 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
JDDGAC_05745 spoIVCA -1.1 -1.2 Hin recombinase compare
JDDGAC_10540 -1.1 -0.7 DUF4387 domain-containing protein compare
JDDGAC_24590 ygaQ -1.1 -1.5 Putative uncharacterized protein YgaQ compare
JDDGAC_08730 ydfB -1.1 -0.9 Uncharacterized protein YdfB compare
JDDGAC_06140 ispE -1.1 -1.0 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase compare
JDDGAC_30000 yubF -1.1 -1.5 Uncharacterized protein YubF compare
JDDGAC_13015 -1.1 -1.4 Phage-associated protein compare
JDDGAC_02130 rsxD -1.1 -3.6 electron transport complex subunit RsxD compare
JDDGAC_26670 cvpA -1.1 -3.6 colicin V production protein compare
JDDGAC_25875 purC -1.1 -3.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
JDDGAC_28830 -1.1 -1.5 Endonuclease compare
JDDGAC_00910 zwf -1.1 -1.1 glucose-6-phosphate dehydrogenase compare
JDDGAC_10565 sucD -1.1 -1.6 succinate--CoA ligase subunit alpha compare
JDDGAC_12655 yahD -1.1 -2.8 Putative ankyrin repeat protein YahD compare
JDDGAC_05690 -1.1 -1.2 phage tail protein compare
JDDGAC_09680 gstB -1.1 -1.8 glutathione S-transferase GstB compare
JDDGAC_16935 purH -1.1 -5.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
JDDGAC_14610 -1.1 -1.3 hypothetical protein compare
JDDGAC_02190 hdhA -1.0 -1.4 7-alpha-hydroxysteroid dehydrogenase compare
JDDGAC_10165 -1.0 -0.8 DNA breaking-rejoining protein compare
JDDGAC_08790 yccX -1.0 -1.8 acylphosphatase compare
JDDGAC_11095 -1.0 -1.5 citrate lyase acyl carrier protein 1 compare
JDDGAC_20250 acpP -1.0 -2.9 acyl carrier protein compare
JDDGAC_11290 hokE -1.0 -2.0 type I toxin-antitoxin system toxin HokE compare
JDDGAC_20225 fadM -1.0 -3.5 4-hydroxybenzoyl-CoA thioesterase compare
JDDGAC_27715 bet -1.0 -0.9 phage recombination protein Bet compare
JDDGAC_06605 icd -1.0 -1.2 NADP-dependent isocitrate dehydrogenase compare
JDDGAC_26935 arnE -1.0 -3.4 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
JDDGAC_23565 -1.0 -0.7 hypothetical protein compare
JDDGAC_20500 yhgN -1.0 -3.7 NAAT family transporter YhgN compare
JDDGAC_23100 serA -1.0 -4.4 phosphoglycerate dehydrogenase compare
JDDGAC_11485 purE -1.0 -1.3 N5-carboxyaminoimidazole ribonucleotide mutase compare
JDDGAC_14750 -1.0 -1.8 putative phosphoglycerate mutase GpmB compare
JDDGAC_24505 nrdH -1.0 -1.4 glutaredoxin-like protein NrdH compare
JDDGAC_09900 ybiE -1.0 -1.2 Protein YbiE compare
JDDGAC_01690 nlpC -1.0 -1.0 putative endopeptidase NlpC compare
JDDGAC_00400 sdiA -1.0 -4.1 transcriptional regulator SdiA compare
JDDGAC_09845 glnH -1.0 -3.6 glutamine ABC transporter substrate-binding protein GlnH compare
JDDGAC_07740 terZ -1.0 -1.8 tellurium resistance-associated protein TerZ compare
JDDGAC_15200 fimA -1.0 -1.7 Type-1 fimbrial protein, A chain precursor compare
JDDGAC_00590 -1.0 -1.6 Putative transmembrane protein compare
JDDGAC_07615 yeeP -1.0 -2.6 50S ribosome-binding GTPase compare
JDDGAC_24645 -1.0 -1.0 DNA-binding protein compare
JDDGAC_29110 -1.0 -1.4 host specificity protein J compare
JDDGAC_10470 tolR -0.9 -1.2 colicin uptake protein TolR compare
JDDGAC_27145 rcsB -0.9 -3.1 transcriptional regulator RcsB compare
JDDGAC_18505 pstC -0.9 -2.0 phosphate ABC transporter permease PstC compare
JDDGAC_02145 rsxA -0.9 -0.6 electron transport complex subunit RsxA compare
JDDGAC_06745 potB -0.9 -2.3 spermidine/putrescine ABC transporter permease PotB compare
JDDGAC_08820 helD -0.9 -3.4 DNA helicase IV compare
JDDGAC_00935 yebF -0.9 -0.9 Protein YebF compare
JDDGAC_07490 csgA -0.9 -1.9 curlin major subunit CsgA compare
JDDGAC_27640 mlrA -0.9 -2.5 HTH-type transcriptional regulator MlrA compare
JDDGAC_22455 cpdA -0.9 -4.4 3',5'-cyclic-AMP phosphodiesterase compare
JDDGAC_06135 lolB -0.9 -1.0 lipoprotein insertase outer membrane protein LolB compare
JDDGAC_24260 hycF -0.9 -1.2 formate hydrogenlyase subunit HycF compare
JDDGAC_05670 gp36 -0.9 -1.1 Bacteriophage Mu, Gp36 compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC98 in phage experiments

For phage Phage across organisms