Experiment set3S242 for Escherichia coli ECRC98

Compare to:

WM_Bas61

200 most important genes:

  gene name fitness t score description  
JDDGAC_15525 mgtL -5.4 -1.7 mgtA leader peptide compare
JDDGAC_02145 rsxA -3.9 -1.7 electron transport complex subunit RsxA compare
JDDGAC_15900 miaA -3.8 -2.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
JDDGAC_15870 purA -3.8 -2.6 adenylosuccinate synthase compare
JDDGAC_06755 -3.5 -1.5 hypothetical protein compare
JDDGAC_25690 -3.2 -2.5 acyltransferase compare
JDDGAC_21580 lptC -3.1 -3.0 LPS export ABC transporter periplasmic protein LptC compare
JDDGAC_06300 minD -3.0 -2.1 septum site-determining protein MinD compare
JDDGAC_06140 ispE -2.9 -1.8 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase compare
JDDGAC_27425 yeiL -2.9 -1.2 Regulatory protein YeiL compare
JDDGAC_27740 -2.9 -1.5 regulator compare
JDDGAC_08445 lomR -2.8 -1.2 Ail/Lom family protein compare
JDDGAC_00840 ruvC -2.8 -4.0 crossover junction endodeoxyribonuclease RuvC compare
JDDGAC_14430 rsmA -2.8 -2.9 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA compare
JDDGAC_06125 prfA -2.7 -1.3 peptide chain release factor 1 compare
JDDGAC_13190 -2.7 -1.9 hypothetical protein compare
JDDGAC_20740 aroK -2.6 -3.0 shikimate kinase AroK compare
JDDGAC_24540 ygaP -2.6 -1.0 thiosulfate sulfurtransferase YgaP compare
JDDGAC_06565 ybcN -2.5 -1.3 Uncharacterized protein YbcN compare
JDDGAC_26340 ypdK -2.4 -1.3 membrane protein YpdK compare
JDDGAC_01920 -2.3 -1.6 FAD/NAD(P)-binding protein compare
JDDGAC_14420 surA -2.2 -3.4 peptidylprolyl isomerase SurA compare
JDDGAC_00825 nudB -2.2 -1.3 dihydroneopterin triphosphate diphosphatase compare
JDDGAC_29110 -2.2 -3.0 host specificity protein J compare
JDDGAC_18945 grlA -2.2 -1.8 type III secretion system LEE transcriptional regulator GrlA compare
JDDGAC_05985 galU -2.0 -3.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
JDDGAC_06425 -2.0 -1.8 phage minor tail protein L compare
JDDGAC_01245 yeaO -2.0 -1.3 Uncharacterized protein YeaO compare
JDDGAC_07825 -2.0 -1.0 Membrane protein compare
JDDGAC_01035 proQ -1.9 -3.5 RNA chaperone ProQ compare
JDDGAC_00545 marR -1.9 -1.7 MarR family transcriptional regulator compare
JDDGAC_15395 -1.9 -1.1 XRE family transcriptional regulator compare
JDDGAC_29975 sopA -1.9 -1.8 plasmid-partitioning protein SopA compare
JDDGAC_09920 espX2 -1.9 -1.2 type III secretion system effector EspX2 compare
JDDGAC_19320 rfaF -1.8 -1.8 ADP-heptose--LPS heptosyltransferase RfaF compare
JDDGAC_23565 -1.8 -1.1 hypothetical protein compare
JDDGAC_13185 -1.8 -2.6 phage holin, lambda family compare
JDDGAC_07050 -1.8 -1.1 Rha family transcriptional regulator compare
JDDGAC_05690 -1.8 -2.1 phage tail protein compare
JDDGAC_23100 serA -1.8 -7.0 phosphoglycerate dehydrogenase compare
JDDGAC_27515 yeiS -1.8 -1.3 Uncharacterized protein YeiS compare
JDDGAC_01205 dmlR -1.7 -1.2 DNA-binding transcriptional regulator DmlR compare
JDDGAC_25750 purN -1.7 -5.1 phosphoribosylglycinamide formyltransferase compare
JDDGAC_01550 chbR -1.7 -1.5 transcriptional regulator ChbR compare
JDDGAC_14890 holD -1.7 -0.9 DNA polymerase III subunit psi compare
JDDGAC_10355 acrZ -1.7 -1.1 multidrug efflux pump accessory protein AcrZ compare
JDDGAC_05645 -1.7 -1.7 tRNA-Xxx compare
JDDGAC_23495 ygeK -1.7 -2.4 Uncharacterized response regulatory protein YgeK compare
JDDGAC_24045 cysH -1.7 -4.6 phosphoadenosine phosphosulfate reductase compare
JDDGAC_26745 yfcD -1.7 -1.7 NUDIX hydrolase YfcD compare
JDDGAC_04725 ynaL -1.7 -1.3 Protein YnaL compare
JDDGAC_29425 -1.6 -1.0 Prophage protein compare
JDDGAC_14795 serB -1.6 -3.1 phosphoserine phosphatase compare
JDDGAC_20700 igaA -1.6 -1.8 intracellular growth attenuator protein IgaA compare
JDDGAC_05950 -1.6 -1.4 hypothetical protein compare
JDDGAC_20355 -1.6 -2.5 DUF1778 domain-containing protein compare
JDDGAC_25905 yffB -1.6 -1.7 ArsC family reductase compare
JDDGAC_06130 hemA -1.5 -1.9 glutamyl-tRNA reductase compare
JDDGAC_14615 -1.5 -1.9 fimbrial family protein compare
JDDGAC_03855 adhP -1.5 -4.6 alcohol dehydrogenase AdhP compare
JDDGAC_09385 lrp -1.5 -2.8 leucine-responsive transcriptional regulator Lrp compare
JDDGAC_15150 uxuR -1.5 -3.6 Uxu operon transcriptional regulator compare
JDDGAC_00520 -1.5 -2.6 Phage protein compare
JDDGAC_28760 kil -1.5 -1.1 Protein kil compare
JDDGAC_29885 tnp-IS911 -1.5 -1.6 IS3 family IS911 transposase compare
JDDGAC_24915 rluD -1.5 -4.9 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
JDDGAC_11390 tnp-ISAs1 -1.5 -1.7 ISAs1 family transposase compare
JDDGAC_05895 yciA -1.5 -3.1 acyl-CoA thioester hydrolase YciA compare
JDDGAC_03900 espR1 -1.4 -1.9 T3SS effector leucine-rich repeat protein EspR1 compare
JDDGAC_04170 ydcA -1.4 -2.2 Uncharacterized protein YdcA compare
JDDGAC_07025 -1.4 -1.3 DUF4406 domain-containing protein compare
JDDGAC_09835 rhtA -1.4 -2.4 threonine/homoserine exporter RhtA compare
JDDGAC_05050 acrR -1.4 -1.9 TetR family transcriptional regulator compare
JDDGAC_06305 minE -1.4 -0.9 cell division topological specificity factor MinE compare
JDDGAC_09810 mntR -1.4 -2.2 manganese-binding transcriptional regulator MntR compare
JDDGAC_28600 hisF -1.4 -0.9 Imidazole glycerol phosphate synthase subunit HisF compare
JDDGAC_09975 ybhM -1.4 -1.5 Uncharacterized protein YbhM compare
JDDGAC_08845 ompA -1.4 -5.2 outer membrane protein A compare
JDDGAC_14440 apaH -1.4 -1.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
JDDGAC_19215 rph -1.4 -5.5 ribonuclease PH compare
JDDGAC_00935 yebF -1.4 -1.3 Protein YebF compare
JDDGAC_23140 ygfB -1.3 -1.5 UPF0149 family protein YgfB compare
JDDGAC_10285 -1.3 -0.8 Cell division protein ZapA compare
JDDGAC_06675 -1.3 -1.5 hypothetical protein compare
JDDGAC_17735 glnG -1.3 -1.4 nitrogen regulation protein NR(I) compare
JDDGAC_03800 dosP -1.3 -1.6 oxygen-sensing cyclic-di-GMP phosphodiesterase compare
JDDGAC_04270 ydbL -1.3 -1.2 DUF1318 domain-containing protein compare
JDDGAC_02120 rsxE -1.3 -3.5 electron transport complex subunit RsxE compare
JDDGAC_04780 ogt -1.3 -1.6 methylated-DNA--[protein]-cysteine S-methyltransferase compare
JDDGAC_24220 hypC -1.3 -2.0 hydrogenase 3 maturation protein HypC compare
JDDGAC_27630 yehW -1.3 -2.5 glycine betaine ABC transporter permease YehW compare
JDDGAC_29980 sopA -1.3 -0.7 plasmid-partitioning protein SopA compare
JDDGAC_02275 ydgH -1.3 -3.1 DUF1471 domain-containing protein compare
JDDGAC_08140 eAL -1.3 -2.2 EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) compare
JDDGAC_26875 elaD -1.3 -1.1 ElaD/SseL family deubiquitinase compare
JDDGAC_10045 ybhB -1.3 -2.1 kinase inhibitor compare
JDDGAC_09100 serC -1.3 -5.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
JDDGAC_25410 yfgM -1.3 -1.8 ancillary SecYEG translocon subunit YfgM compare
JDDGAC_28445 wcaE -1.3 -1.1 colanic acid biosynthesis glycosyltransferase WcaE compare
JDDGAC_17910 tatA -1.3 -0.9 Sec-independent protein translocase subunit TatA compare
JDDGAC_26675 purF -1.3 -6.7 amidophosphoribosyltransferase compare
JDDGAC_10570 sucC -1.2 -2.7 ADP-forming succinate--CoA ligase subunit beta compare
JDDGAC_19100 -1.2 -0.8 Aec79 compare
JDDGAC_25135 purL -1.2 -8.0 phosphoribosylformylglycinamidine synthase compare
JDDGAC_05065 rnb -1.2 -2.7 exoribonuclease II compare
JDDGAC_10470 tolR -1.2 -2.7 colicin uptake protein TolR compare
JDDGAC_10870 miaB -1.2 -5.5 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
JDDGAC_05790 hokD1 -1.2 -1.3 Protein HokD compare
JDDGAC_29920 -1.2 -1.5 hypothetical protein compare
JDDGAC_11485 purE -1.2 -2.0 N5-carboxyaminoimidazole ribonucleotide mutase compare
JDDGAC_10765 ybfE -1.2 -4.2 LexA regulated protein compare
JDDGAC_20705 nudE -1.2 -3.5 ADP compounds hydrolase NudE compare
JDDGAC_03640 uxaB -1.2 -1.7 tagaturonate reductase compare
JDDGAC_05250 nleG -1.2 -1.0 T3SS effector E3 ubiquitin-protein ligase NleG compare
JDDGAC_24625 alpA -1.2 -1.4 dipicolinate synthase compare
JDDGAC_10170 -1.2 -1.4 recombinase RecA compare
JDDGAC_25045 rseA -1.2 -2.3 anti-sigma-E factor RseA compare
JDDGAC_16935 purH -1.2 -5.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
JDDGAC_23365 Gly_trna -1.2 -2.9 tRNA-Gly(ccc) compare
JDDGAC_08190 efeU -1.2 -1.1 Ferrous iron permease EfeU compare
JDDGAC_21770 nlpI -1.2 -4.7 lipoprotein NlpI compare
JDDGAC_18405 mnmG -1.1 -2.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
JDDGAC_26035 eutK -1.1 -2.0 ethanolamine utilization microcompartment protein EutK compare
JDDGAC_10225 -1.1 -0.8 DUF3927 domain-containing protein compare
JDDGAC_05730 ymfQ -1.1 -1.4 Bacteriophage Mu-like, Gp48 compare
JDDGAC_09680 gstB -1.1 -3.0 glutathione S-transferase GstB compare
JDDGAC_03575 eamA -1.1 -3.2 O-acetylserine/cysteine exporter compare
JDDGAC_08655 -1.1 -2.0 Endodeoxyribonuclease RusA compare
JDDGAC_18020 corA -1.1 -2.3 magnesium/cobalt transporter CorA compare
JDDGAC_21780 deaD -1.1 -2.2 ATP-dependent RNA helicase DeaD compare
JDDGAC_05735 -1.1 -3.5 phage tail protein compare
JDDGAC_05255 -1.1 -0.9 hypothetical protein compare
JDDGAC_06310 -1.1 -1.2 autotransporter outer membrane beta-barrel domain-containing protein compare
JDDGAC_20210 -1.1 -1.7 DUF3261 domain-containing protein compare
JDDGAC_03685 lsrK -1.1 -1.6 autoinducer-2 kinase compare
JDDGAC_28395 -1.1 -2.6 transcriptional regulator compare
JDDGAC_05045 acrA -1.1 -2.7 efflux transporter periplasmic adaptor subunit compare
JDDGAC_21125 yhdN -1.1 -1.9 Uncharacterized protein YhdN compare
JDDGAC_06135 lolB -1.1 -1.4 lipoprotein insertase outer membrane protein LolB compare
JDDGAC_11490 purK -1.1 -4.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
JDDGAC_28195 yegW -1.0 -1.5 Uncharacterized HTH-type transcriptional regulator YegW compare
JDDGAC_04825 frsA -1.0 -1.7 alpha/beta hydrolase compare
JDDGAC_03505 ydfJ -1.0 -1.1 Putative transporter YdfJ compare
JDDGAC_28685 -1.0 -1.0 AlpA family transcriptional regulator compare
JDDGAC_11260 ybdZ -1.0 -0.7 Enterobactin biosynthesis protein YbdZ compare
JDDGAC_25755 purM -1.0 -3.7 Phosphoribosylformylglycinamidine cyclo-ligase compare
JDDGAC_04330 nleC -1.0 -2.6 type III secretion system effector zinc metalloprotease NleC compare
JDDGAC_28390 asmA -1.0 -3.2 outer membrane assembly protein AsmA compare
JDDGAC_12715 -1.0 -1.7 LuxR family transcriptional regulator compare
JDDGAC_23435 -1.0 -1.5 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
JDDGAC_12265 proC -1.0 -2.0 pyrroline-5-carboxylate reductase compare
JDDGAC_26795 lrhA -1.0 -5.4 transcriptional regulator LrhA compare
JDDGAC_16940 purD -1.0 -4.8 Phosphoribosylamine--glycine ligase compare
JDDGAC_22880 yggT -1.0 -0.9 osmotic shock tolerance protein YggT compare
JDDGAC_25245 hcaC -1.0 -1.6 bifunctional 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit compare
JDDGAC_08855 ycbZ -1.0 -3.8 Putative Lon protease-like protein compare
JDDGAC_01505 spy -1.0 -1.3 ATP-independent periplasmic protein-refolding chaperone Spy compare
JDDGAC_11315 nfsB -1.0 -3.7 oxygen-insensitive NAD(P)H nitroreductase compare
JDDGAC_22945 speB -1.0 -3.8 agmatinase compare
JDDGAC_29030 -1.0 -1.2 Putative prophage portal protein compare
JDDGAC_22755 nleB -1.0 -2.2 type III secretion system effector arginine glycosyltransferase NleB compare
JDDGAC_19455 -1.0 -1.7 Immunity protein 57 compare
JDDGAC_07785 tnpB -1.0 -1.3 IS66 family insertion sequence element accessory protein TnpB compare
JDDGAC_04980 puuR -1.0 -3.3 HTH-type transcriptional regulator PuuR compare
JDDGAC_11060 crcB -1.0 -1.2 fluoride efflux transporter CrcB compare
JDDGAC_28290 baeS -1.0 -1.0 two-component system sensor histidine kinase BaeS compare
JDDGAC_01815 ydiH -1.0 -1.0 Uncharacterized protein YdiH compare
JDDGAC_19110 -1.0 -1.4 toxin compare
JDDGAC_03950 yddH -1.0 -1.2 Uncharacterized protein YddH compare
JDDGAC_05670 gp36 -1.0 -1.5 Bacteriophage Mu, Gp36 compare
JDDGAC_24735 rrrD -1.0 -0.7 lysozyme compare
JDDGAC_26765 yfbV -1.0 -0.7 UPF0208 membrane protein YfbV compare
JDDGAC_14590 espX1 -1.0 -1.5 type III secretion system effector EspX1 compare
JDDGAC_15675 cysQ -0.9 -3.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
JDDGAC_03630 yneG -0.9 -1.1 Uncharacterized protein YneG compare
JDDGAC_27770 ybcN -0.9 -1.5 DNA base-flipping protein YbcN compare
JDDGAC_03335 -0.9 -1.1 9-O-acetyl-N-acetylneuraminic acid deacetylase compare
JDDGAC_00235 rcsA -0.9 -1.5 transcriptional regulator RcsA compare
JDDGAC_18505 pstC -0.9 -2.9 phosphate ABC transporter permease PstC compare
JDDGAC_10565 sucD -0.9 -1.6 succinate--CoA ligase subunit alpha compare
JDDGAC_03880 yddG -0.9 -1.5 aromatic amino acid efflux DMT transporter YddG compare
JDDGAC_15570 yjgA -0.9 -3.1 ribosome-associated protein compare
JDDGAC_06235 nhaB -0.9 -2.9 Na(+)/H(+) antiporter NhaB compare
JDDGAC_19280 rfaG -0.9 -2.8 Lipopolysaccharide core biosynthesis protein RfaG compare
JDDGAC_03860 yddM -0.9 -1.3 HigA family addiction module antitoxin compare
JDDGAC_24675 -0.9 -0.6 hypothetical protein compare
JDDGAC_04915 -0.9 -2.4 ABC transporter substrate-binding protein compare
JDDGAC_12165 queA -0.9 -2.9 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
JDDGAC_11250 fepE -0.9 -2.4 LPS O-antigen length regulator compare
JDDGAC_20225 fadM -0.9 -3.5 4-hydroxybenzoyl-CoA thioesterase compare
JDDGAC_24035 cysJ -0.9 -4.5 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
JDDGAC_13250 -0.9 -1.2 XRE family transcriptional regulator compare
JDDGAC_18890 ler -0.9 -1.7 transcription regulator Ler compare
JDDGAC_07765 citE -0.9 -3.3 citrate lyase subunit beta compare
JDDGAC_05960 ychE -0.9 -3.3 NAAT family transporter YchE compare
JDDGAC_01535 chbB -0.9 -0.9 PTS N,N'-diacetylchitobiose transporter subunit IIB compare
JDDGAC_29395 eCs1768 -0.9 -1.1 phage replisome organizer compare
JDDGAC_15895 hfq -0.8 -2.1 RNA chaperone Hfq compare
JDDGAC_10510 -0.8 -1.2 hypothetical protein compare
JDDGAC_02170 add -0.8 -1.0 adenosine deaminase compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC98 in phage experiments

For phage Phage across organisms