Experiment set3S241 for Rhodanobacter sp000427505 FW510-R12

Compare to:

defined media with D-Glucose

200 most important genes:

  gene name fitness t score description  
LRK53_RS03675 -3.9 -18.0 glucokinase compare
LRK53_RS02945 -3.6 -12.6 phosphoribosylamine--glycine ligase compare
LRK53_RS06795 -3.4 -2.4 phosphoglycerate dehydrogenase compare
LRK53_RS03095 -3.4 -3.2 dihydroxy-acid dehydratase compare
LRK53_RS07560 -3.3 -8.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
LRK53_RS03120 -3.3 -3.9 2-isopropylmalate synthase compare
LRK53_RS08310 -3.2 -15.2 chorismate synthase compare
LRK53_RS05625 -3.2 -3.7 shikimate kinase compare
LRK53_RS07530 -3.2 -13.2 N-acetylornithine carbamoyltransferase compare
LRK53_RS08485 -3.2 -3.7 imidazole glycerol phosphate synthase subunit HisF compare
LRK53_RS08480 -3.1 -3.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LRK53_RS08695 -3.1 -13.5 amidophosphoribosyltransferase compare
LRK53_RS16490 -3.1 -9.9 phosphoenolpyruvate carboxylase compare
LRK53_RS09845 -3.1 -11.2 asparagine synthase B compare
LRK53_RS00065 -3.1 -5.1 glutamate synthase subunit beta compare
LRK53_RS07550 -3.1 -3.6 acetylornithine deacetylase compare
LRK53_RS03105 -3.0 -7.3 3-isopropylmalate dehydratase small subunit compare
LRK53_RS16995 -3.0 -2.1 aminodeoxychorismate/anthranilate synthase component II compare
LRK53_RS03090 -3.0 -7.0 ketol-acid reductoisomerase compare
LRK53_RS00070 -3.0 -16.7 glutamate synthase-related protein compare
LRK53_RS07555 -3.0 -10.0 acetylglutamate kinase compare
LRK53_RS03100 -2.9 -6.8 3-isopropylmalate dehydrogenase compare
LRK53_RS08465 -2.9 -7.5 histidinol-phosphate transaminase compare
LRK53_RS09195 -2.9 -9.8 LysR substrate-binding domain-containing protein compare
LRK53_RS09760 -2.9 -4.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
LRK53_RS17085 -2.9 -15.0 anthranilate synthase component I compare
LRK53_RS08450 -2.9 -2.8 YerC/YecD family TrpR-related protein compare
LRK53_RS04695 -2.9 -3.4 homoserine O-succinyltransferase compare
LRK53_RS07545 -2.9 -9.2 argininosuccinate synthase compare
LRK53_RS01735 -2.8 -15.8 TolC family outer membrane protein compare
LRK53_RS09750 -2.8 -10.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
LRK53_RS09755 -2.8 -8.9 prephenate dehydratase compare
LRK53_RS02585 -2.8 -13.8 efflux RND transporter periplasmic adaptor subunit compare
LRK53_RS14790 -2.8 -1.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
LRK53_RS03160 -2.8 -2.7 homoserine kinase compare
LRK53_RS02375 -2.8 -7.1 shikimate dehydrogenase compare
LRK53_RS09205 -2.7 -4.9 cysteine synthase A compare
LRK53_RS08475 -2.7 -4.2 imidazole glycerol phosphate synthase subunit HisH compare
LRK53_RS07575 -2.7 -7.6 glutamate-5-semialdehyde dehydrogenase compare
LRK53_RS03110 -2.7 -3.2 3-isopropylmalate dehydratase large subunit compare
LRK53_RS08455 -2.7 -2.6 ATP phosphoribosyltransferase compare
LRK53_RS07565 -2.7 -6.9 argininosuccinate lyase compare
LRK53_RS02595 -2.7 -14.8 efflux RND transporter permease subunit compare
LRK53_RS09520 -2.7 -2.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK53_RS05295 -2.7 -20.8 phosphoribosylformylglycinamidine synthase compare
LRK53_RS04265 -2.6 -4.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK53_RS07920 -2.6 -2.5 homocysteine S-methyltransferase family protein compare
LRK53_RS04700 -2.6 -7.9 cystathionine gamma-synthase compare
LRK53_RS08460 -2.6 -5.2 histidinol dehydrogenase compare
LRK53_RS03085 -2.6 -3.0 biosynthetic-type acetolactate synthase large subunit compare
LRK53_RS01620 -2.5 -3.0 type II 3-dehydroquinate dehydratase compare
LRK53_RS09180 -2.5 -8.3 assimilatory sulfite reductase (NADPH) flavoprotein subunit compare
LRK53_RS04955 -2.5 -9.9 L-fucose:H+ symporter permease compare
LRK53_RS16505 -2.5 -5.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
LRK53_RS04490 -2.5 -20.3 adenylyl-sulfate kinase compare
LRK53_RS03155 -2.5 -3.7 threonine synthase compare
LRK53_RS04285 -2.5 -4.9 phosphoglycerate kinase compare
LRK53_RS02545 -2.4 -1.7 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK53_RS04485 -2.4 -14.3 sulfate adenylyltransferase subunit CysD compare
LRK53_RS14785 -2.4 -1.7 5-(carboxyamino)imidazole ribonucleotide synthase compare
LRK53_RS08470 -2.4 -2.3 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
LRK53_RS09185 -2.4 -10.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
LRK53_RS09200 -2.4 -5.7 siroheme synthase CysG compare
LRK53_RS15945 -2.4 -6.3 bifunctional aspartate kinase/diaminopimelate decarboxylase compare
LRK53_RS05390 -2.4 -7.2 serine hydroxymethyltransferase compare
LRK53_RS15655 -2.4 -3.2 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK53_RS03125 -2.4 -9.8 hypothetical protein compare
LRK53_RS07570 -2.4 -4.7 glutamate 5-kinase compare
LRK53_RS04190 -2.4 -3.9 dihydrolipoyl dehydrogenase compare
LRK53_RS03115 -2.3 -6.7 branched-chain amino acid transaminase compare
LRK53_RS07915 -2.3 -4.1 methionine synthase compare
LRK53_RS15625 -2.3 -8.8 hemolysin family protein compare
LRK53_RS05785 -2.2 -3.3 inositol-phosphate phosphatase compare
LRK53_RS16990 -2.2 -1.5 anthranilate phosphoribosyltransferase compare
LRK53_RS16900 -2.2 -3.6 ribose-5-phosphate isomerase RpiA compare
LRK53_RS16165 -2.2 -2.6 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
LRK53_RS09475 -2.2 -9.5 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK53_RS15195 -2.2 -3.6 flagellar biosynthesis anti-sigma factor FlgM compare
LRK53_RS08490 -2.2 -4.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
LRK53_RS09190 -2.2 -7.1 phosphoadenylyl-sulfate reductase compare
LRK53_RS14865 -2.1 -4.0 CBS domain-containing protein compare
LRK53_RS09265 -2.1 -1.4 GntR family transcriptional regulator compare
LRK53_RS04055 -2.1 -5.4 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
LRK53_RS03715 -2.1 -1.4 cell division ATP-binding protein FtsE compare
LRK53_RS05680 -2.1 -2.0 pyrroline-5-carboxylate reductase compare
LRK53_RS02600 -2.0 -14.1 efflux RND transporter permease subunit compare
LRK53_RS04185 -2.0 -4.2 dihydrolipoyllysine-residue acetyltransferase compare
LRK53_RS16985 -2.0 -2.4 indole-3-glycerol phosphate synthase TrpC compare
LRK53_RS11155 -2.0 -4.6 glutamine-hydrolyzing GMP synthase compare
LRK53_RS17145 -2.0 -2.3 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK53_RS15705 -2.0 -7.5 RNA polymerase factor sigma-54 compare
LRK53_RS16290 -1.9 -2.2 division/cell wall cluster transcriptional repressor MraZ compare
LRK53_RS16860 -1.9 -1.2 cytochrome bd-I oxidase subunit CydX compare
LRK53_RS17105 -1.9 -7.4 ribulose-phosphate 3-epimerase compare
LRK53_RS04075 -1.8 -11.3 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK53_RS03165 -1.8 -2.7 homoserine dehydrogenase compare
LRK53_RS08205 -1.7 -1.9 RnfABCDGE type electron transport complex subunit B compare
LRK53_RS12970 -1.7 -2.7 RNA 2',3'-cyclic phosphodiesterase compare
LRK53_RS05860 -1.7 -2.4 hypothetical protein compare
LRK53_RS05340 -1.6 -1.8 peptide deformylase compare
LRK53_RS16160 -1.6 -1.1 hypothetical protein compare
LRK53_RS04475 -1.6 -5.6 electron transfer flavoprotein-ubiquinone oxidoreductase compare
LRK53_RS08350 -1.6 -1.1 tryptophan synthase subunit beta compare
LRK53_RS16540 -1.5 -5.6 tRNA-Gly compare
LRK53_RS01120 -1.5 -2.2 VanZ family protein compare
LRK53_RS03700 -1.5 -1.1 transcription termination factor Rho compare
LRK53_RS03075 -1.4 -5.0 threonine ammonia-lyase, biosynthetic compare
LRK53_RS04445 -1.4 -0.9 glycoside hydrolase family 99-like domain-containing protein compare
LRK53_RS05795 -1.4 -7.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
LRK53_RS18285 -1.3 -2.8 hypothetical protein compare
LRK53_RS04390 -1.3 -1.8 glycosyltransferase family 2 protein compare
LRK53_RS06715 -1.3 -1.9 [protein-PII] uridylyltransferase compare
LRK53_RS00945 -1.3 -1.9 helix-turn-helix domain-containing protein compare
LRK53_RS11790 -1.3 -1.5 cbb3-type cytochrome c oxidase subunit 3 compare
LRK53_RS09830 -1.3 -1.9 phosphoglycerate mutase compare
LRK53_RS17205 -1.3 -4.4 fumarylacetoacetate hydrolase family protein compare
LRK53_RS17395 -1.3 -4.5 PepSY domain-containing protein compare
LRK53_RS06800 -1.3 -5.7 FAD-binding oxidoreductase compare
LRK53_RS13895 -1.3 -1.1 histone H1-like repetitive region-containing protein compare
LRK53_RS16345 -1.3 -1.3 hypothetical protein compare
LRK53_RS11330 -1.2 -1.4 (d)CMP kinase compare
LRK53_RS00690 -1.2 -1.4 N-acetylglucosamine-6-phosphate deacetylase compare
LRK53_RS17940 -1.2 -6.6 hypothetical protein compare
LRK53_RS05565 -1.2 -0.8 H-NS histone family protein compare
LRK53_RS02135 -1.2 -2.4 hypothetical protein compare
LRK53_RS05505 -1.2 -2.9 ABC transporter ATP-binding protein compare
LRK53_RS04590 -1.2 -6.0 TetR/AcrR family transcriptional regulator compare
LRK53_RS11425 -1.1 -2.1 RnfH family protein compare
LRK53_RS12250 -1.1 -6.1 Mth938-like domain-containing protein compare
LRK53_RS01585 -1.1 -1.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LRK53_RS00345 -1.1 -2.6 sorbitol dehydrogenase family protein compare
LRK53_RS02450 -1.1 -4.1 SPFH domain-containing protein compare
LRK53_RS15805 -1.0 -2.3 NAD(P)-binding domain-containing protein compare
LRK53_RS09610 -1.0 -9.0 aminomethyl-transferring glycine dehydrogenase compare
LRK53_RS05265 -1.0 -1.4 hypothetical protein compare
LRK53_RS09435 -1.0 -0.9 malate dehydrogenase compare
LRK53_RS09590 -1.0 -1.3 hypothetical protein compare
LRK53_RS09540 -1.0 -5.4 protease modulator HflC compare
LRK53_RS13450 -1.0 -4.3 FKBP-type peptidyl-prolyl cis-trans isomerase compare
LRK53_RS16495 -1.0 -1.1 adenosylhomocysteinase compare
LRK53_RS08420 -1.0 -3.1 MerC domain-containing protein compare
LRK53_RS00395 -0.9 -1.8 SDR family oxidoreductase compare
LRK53_RS11035 -0.9 -1.6 major capsid protein compare
LRK53_RS10035 -0.9 -1.2 hypothetical protein compare
LRK53_RS02150 -0.9 -1.5 6-carboxytetrahydropterin synthase QueD compare
LRK53_RS04500 -0.9 -3.7 glycine cleavage system protein GcvH compare
LRK53_RS08355 -0.9 -0.6 tryptophan synthase subunit alpha compare
LRK53_RS13510 -0.9 -5.0 polynucleotide adenylyltransferase PcnB compare
LRK53_RS12000 -0.9 -2.6 sigma-E factor negative regulatory protein compare
LRK53_RS07695 -0.9 -2.3 enoyl-CoA hydratase-related protein compare
LRK53_RS16740 -0.9 -4.7 RidA family protein compare
LRK53_RS08795 -0.9 -1.3 MBL fold metallo-hydrolase compare
LRK53_RS06500 -0.8 -0.9 disulfide bond formation protein B compare
LRK53_RS05435 -0.8 -1.8 GNAT family N-acetyltransferase compare
LRK53_RS12285 -0.8 -1.5 magnesium transporter compare
LRK53_RS09595 -0.8 -1.1 hypothetical protein compare
LRK53_RS09710 -0.8 -2.5 high frequency lysogenization protein HflD compare
LRK53_RS09140 -0.8 -3.8 YhdH/YhfP family quinone oxidoreductase compare
LRK53_RS12440 -0.8 -1.6 hypothetical protein compare
LRK53_RS00200 -0.8 -5.4 phenylalanine 4-monooxygenase compare
LRK53_RS03695 -0.8 -5.4 glutamate--cysteine ligase compare
LRK53_RS09315 -0.8 -1.7 pseudouridine synthase compare
LRK53_RS13330 -0.8 -7.0 methylmalonyl-CoA mutase family protein compare
LRK53_RS01745 -0.8 -3.8 TetR/AcrR family transcriptional regulator compare
LRK53_RS04495 -0.8 -2.8 glycine cleavage system aminomethyltransferase GcvT compare
LRK53_RS11255 -0.8 -1.5 DNA oxidative demethylase AlkB compare
LRK53_RS16650 -0.7 -1.7 O-acetyl-ADP-ribose deacetylase compare
LRK53_RS05175 -0.7 -1.1 7-cyano-7-deazaguanine synthase QueC compare
LRK53_RS13695 -0.7 -1.3 response regulator compare
LRK53_RS03760 -0.7 -1.7 NRDE family protein compare
LRK53_RS04870 -0.7 -5.2 sugar porter family MFS transporter compare
LRK53_RS00125 -0.7 -1.5 GntR family transcriptional regulator compare
LRK53_RS19150 -0.7 -2.7 hypothetical protein compare
LRK53_RS09100 -0.7 -0.9 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
LRK53_RS18780 -0.7 -2.5 hypothetical protein compare
LRK53_RS06770 -0.7 -3.6 integration host factor subunit alpha compare
LRK53_RS01525 -0.7 -1.2 hypothetical protein compare
LRK53_RS13070 -0.7 -1.6 OsmC family protein compare
LRK53_RS04640 -0.7 -1.0 helix-turn-helix domain-containing protein compare
LRK53_RS08660 -0.7 -1.9 YajG family lipoprotein compare
LRK53_RS11400 -0.7 -2.1 DNA repair protein RecN compare
LRK53_RS09535 -0.7 -4.6 FtsH protease activity modulator HflK compare
LRK53_RS06840 -0.7 -1.8 tRNA guanosine(34) transglycosylase Tgt compare
LRK53_RS09980 -0.7 -0.9 hypothetical protein compare
LRK53_RS08100 -0.7 -1.1 MBL fold metallo-hydrolase compare
LRK53_RS09770 -0.7 -3.8 excinuclease ABC subunit UvrC compare
LRK53_RS01100 -0.7 -3.4 pteridine reductase compare
LRK53_RS00310 -0.7 -1.9 P-II family nitrogen regulator compare
LRK53_RS14110 -0.7 -0.9 GNAT family N-acetyltransferase compare
LRK53_RS19015 -0.7 -1.6 hypothetical protein compare
LRK53_RS13625 -0.7 -0.7 carbon storage regulator CsrA compare
LRK53_RS18045 -0.7 -1.4 DUF6429 family protein compare
LRK53_RS06175 -0.7 -1.2 acylphosphatase compare
LRK53_RS04505 -0.7 -1.3 met regulon transcriptional regulator MetJ compare
LRK53_RS12680 -0.7 -5.1 polyhydroxyalkanoate synthesis repressor PhaR compare
LRK53_RS15630 -0.7 -2.3 RNA methyltransferase compare
LRK53_RS09425 -0.7 -2.2 GlsB/YeaQ/YmgE family stress response membrane protein compare
LRK53_RS12280 -0.6 -1.7 tRNA pseudouridine(13) synthase TruD compare
LRK53_RS09460 -0.6 -1.9 methylisocitrate lyase compare
LRK53_RS18830 -0.6 -1.1 TraV family lipoprotein compare


Specific Phenotypes

For 2 genes in this experiment

For nutrient D-Glucose in Rhodanobacter sp000427505 FW510-R12

For nutrient D-Glucose across organisms