Experiment set3S239 for Rhodanobacter sp000427505 FW510-R12

Compare to:

defined media with L-Serine

200 most important genes:

  gene name fitness t score description  
LRK53_RS09760 -3.7 -5.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
LRK53_RS08695 -3.7 -11.9 amidophosphoribosyltransferase compare
LRK53_RS02945 -3.6 -11.4 phosphoribosylamine--glycine ligase compare
LRK53_RS16900 -3.6 -2.5 ribose-5-phosphate isomerase RpiA compare
LRK53_RS03095 -3.6 -3.5 dihydroxy-acid dehydratase compare
LRK53_RS05625 -3.6 -3.5 shikimate kinase compare
LRK53_RS13895 -3.5 -2.0 histone H1-like repetitive region-containing protein compare
LRK53_RS07530 -3.5 -12.1 N-acetylornithine carbamoyltransferase compare
LRK53_RS08310 -3.5 -14.9 chorismate synthase compare
LRK53_RS03120 -3.4 -3.3 2-isopropylmalate synthase compare
LRK53_RS07545 -3.4 -6.4 argininosuccinate synthase compare
LRK53_RS07550 -3.3 -3.2 acetylornithine deacetylase compare
LRK53_RS07555 -3.3 -8.3 acetylglutamate kinase compare
LRK53_RS03160 -3.3 -2.2 homoserine kinase compare
LRK53_RS08465 -3.2 -6.9 histidinol-phosphate transaminase compare
LRK53_RS01735 -3.2 -13.1 TolC family outer membrane protein compare
LRK53_RS08480 -3.2 -3.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LRK53_RS09845 -3.2 -11.1 asparagine synthase B compare
LRK53_RS05295 -3.1 -23.6 phosphoribosylformylglycinamidine synthase compare
LRK53_RS16490 -3.1 -7.6 phosphoenolpyruvate carboxylase compare
LRK53_RS07560 -3.1 -8.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
LRK53_RS09755 -3.1 -6.6 prephenate dehydratase compare
LRK53_RS08475 -3.1 -4.2 imidazole glycerol phosphate synthase subunit HisH compare
LRK53_RS02375 -3.1 -6.3 shikimate dehydrogenase compare
LRK53_RS03100 -3.0 -6.8 3-isopropylmalate dehydrogenase compare
LRK53_RS00065 -3.0 -4.6 glutamate synthase subunit beta compare
LRK53_RS00070 -3.0 -14.2 glutamate synthase-related protein compare
LRK53_RS02585 -3.0 -12.7 efflux RND transporter periplasmic adaptor subunit compare
LRK53_RS09180 -3.0 -6.3 assimilatory sulfite reductase (NADPH) flavoprotein subunit compare
LRK53_RS02595 -3.0 -13.5 efflux RND transporter permease subunit compare
LRK53_RS03090 -3.0 -6.9 ketol-acid reductoisomerase compare
LRK53_RS03105 -2.9 -6.5 3-isopropylmalate dehydratase small subunit compare
LRK53_RS07565 -2.9 -5.6 argininosuccinate lyase compare
LRK53_RS04285 -2.9 -2.9 phosphoglycerate kinase compare
LRK53_RS04265 -2.9 -3.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK53_RS03675 -2.9 -18.3 glucokinase compare
LRK53_RS04700 -2.9 -6.7 cystathionine gamma-synthase compare
LRK53_RS04490 -2.9 -21.6 adenylyl-sulfate kinase compare
LRK53_RS03115 -2.9 -4.8 branched-chain amino acid transaminase compare
LRK53_RS09195 -2.9 -9.9 LysR substrate-binding domain-containing protein compare
LRK53_RS04485 -2.9 -14.1 sulfate adenylyltransferase subunit CysD compare
LRK53_RS03155 -2.9 -2.8 threonine synthase compare
LRK53_RS17085 -2.8 -13.9 anthranilate synthase component I compare
LRK53_RS03110 -2.8 -2.7 3-isopropylmalate dehydratase large subunit compare
LRK53_RS09185 -2.8 -8.7 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
LRK53_RS04695 -2.8 -3.3 homoserine O-succinyltransferase compare
LRK53_RS15705 -2.8 -4.6 RNA polymerase factor sigma-54 compare
LRK53_RS14790 -2.8 -1.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
LRK53_RS09200 -2.8 -4.2 siroheme synthase CysG compare
LRK53_RS15945 -2.8 -4.2 bifunctional aspartate kinase/diaminopimelate decarboxylase compare
LRK53_RS04190 -2.7 -2.6 dihydrolipoyl dehydrogenase compare
LRK53_RS16985 -2.7 -1.9 indole-3-glycerol phosphate synthase TrpC compare
LRK53_RS02600 -2.7 -14.9 efflux RND transporter permease subunit compare
LRK53_RS06715 -2.7 -2.5 [protein-PII] uridylyltransferase compare
LRK53_RS01620 -2.7 -3.1 type II 3-dehydroquinate dehydratase compare
LRK53_RS09190 -2.6 -6.7 phosphoadenylyl-sulfate reductase compare
LRK53_RS07575 -2.6 -7.2 glutamate-5-semialdehyde dehydrogenase compare
LRK53_RS08460 -2.6 -5.3 histidinol dehydrogenase compare
LRK53_RS08455 -2.6 -2.5 ATP phosphoribosyltransferase compare
LRK53_RS09205 -2.6 -4.7 cysteine synthase A compare
LRK53_RS03085 -2.6 -1.8 biosynthetic-type acetolactate synthase large subunit compare
LRK53_RS08490 -2.6 -4.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
LRK53_RS03125 -2.6 -9.6 hypothetical protein compare
LRK53_RS15655 -2.5 -3.4 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK53_RS07920 -2.5 -2.9 homocysteine S-methyltransferase family protein compare
LRK53_RS16505 -2.5 -4.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
LRK53_RS08470 -2.5 -2.4 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
LRK53_RS04075 -2.5 -8.5 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK53_RS00570 -2.4 -2.9 nitrogen regulation protein NR(I) compare
LRK53_RS05795 -2.4 -8.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
LRK53_RS14520 -2.4 -1.6 GNAT family N-acetyltransferase compare
LRK53_RS02545 -2.4 -1.6 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK53_RS14785 -2.4 -2.3 5-(carboxyamino)imidazole ribonucleotide synthase compare
LRK53_RS07570 -2.4 -4.9 glutamate 5-kinase compare
LRK53_RS07915 -2.3 -3.9 methionine synthase compare
LRK53_RS05390 -2.3 -6.7 serine hydroxymethyltransferase compare
LRK53_RS04185 -2.3 -3.2 dihydrolipoyllysine-residue acetyltransferase compare
LRK53_RS17145 -2.3 -2.2 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK53_RS11155 -2.3 -4.4 glutamine-hydrolyzing GMP synthase compare
LRK53_RS01235 -2.3 -2.1 monovalent cation:proton antiporter-2 (CPA2) family protein compare
LRK53_RS08485 -2.2 -3.7 imidazole glycerol phosphate synthase subunit HisF compare
LRK53_RS17395 -2.2 -5.4 PepSY domain-containing protein compare
LRK53_RS12250 -2.2 -8.0 Mth938-like domain-containing protein compare
LRK53_RS16740 -2.2 -6.0 RidA family protein compare
LRK53_RS09105 -2.2 -8.8 S-methyl-5-thioribose-1-phosphate isomerase compare
LRK53_RS05680 -2.1 -1.5 pyrroline-5-carboxylate reductase compare
LRK53_RS06870 -2.1 -1.4 SUF system Fe-S cluster assembly regulator compare
LRK53_RS05015 -2.1 -3.7 LacI family DNA-binding transcriptional regulator compare
LRK53_RS17105 -2.0 -7.3 ribulose-phosphate 3-epimerase compare
LRK53_RS08450 -2.0 -2.9 YerC/YecD family TrpR-related protein compare
LRK53_RS16995 -1.9 -1.8 aminodeoxychorismate/anthranilate synthase component II compare
LRK53_RS09475 -1.9 -8.9 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK53_RS09520 -1.9 -1.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK53_RS03165 -1.9 -2.5 homoserine dehydrogenase compare
LRK53_RS04750 -1.9 -2.6 L-serine ammonia-lyase compare
LRK53_RS16160 -1.9 -1.3 hypothetical protein compare
LRK53_RS13525 -1.9 -4.2 ferredoxin family protein compare
LRK53_RS06915 -1.9 -7.1 non-heme iron oxygenase ferredoxin subunit compare
LRK53_RS03075 -1.9 -5.1 threonine ammonia-lyase, biosynthetic compare
LRK53_RS16165 -1.8 -3.5 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
LRK53_RS16990 -1.8 -2.7 anthranilate phosphoribosyltransferase compare
LRK53_RS15200 -1.8 -1.6 flagellar protein FlgN compare
LRK53_RS09830 -1.7 -1.2 phosphoglycerate mutase compare
LRK53_RS02285 -1.7 -1.2 oxygen-dependent coproporphyrinogen oxidase compare
LRK53_RS07395 -1.7 -2.3 iron-sulfur cluster assembly accessory protein compare
LRK53_RS09660 -1.7 -1.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
LRK53_RS03695 -1.7 -9.3 glutamate--cysteine ligase compare
LRK53_RS17925 -1.7 -8.8 SDR family NAD(P)-dependent oxidoreductase compare
LRK53_RS09710 -1.7 -4.0 high frequency lysogenization protein HflD compare
LRK53_RS17205 -1.7 -4.3 fumarylacetoacetate hydrolase family protein compare
LRK53_RS01585 -1.6 -1.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LRK53_RS03545 -1.6 -2.1 DUF2249 domain-containing protein compare
LRK53_RS09100 -1.6 -1.1 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
LRK53_RS11920 -1.6 -9.8 S-methyl-5'-thioinosine phosphorylase compare
LRK53_RS14455 -1.6 -2.3 ATP-binding protein compare
LRK53_RS00565 -1.6 -1.5 ATP-binding protein compare
LRK53_RS03875 -1.6 -2.7 DUF4194 domain-containing protein compare
LRK53_RS06570 -1.6 -1.5 DUF615 domain-containing protein compare
LRK53_RS05410 -1.6 -2.2 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
LRK53_RS15195 -1.6 -3.4 flagellar biosynthesis anti-sigma factor FlgM compare
LRK53_RS04590 -1.6 -6.6 TetR/AcrR family transcriptional regulator compare
LRK53_RS07695 -1.5 -3.1 enoyl-CoA hydratase-related protein compare
LRK53_RS07245 -1.5 -1.4 ribosome silencing factor compare
LRK53_RS13540 -1.5 -3.9 glycine cleavage system protein R compare
LRK53_RS16290 -1.5 -2.5 division/cell wall cluster transcriptional repressor MraZ compare
LRK53_RS08505 -1.5 -3.4 acireductone dioxygenase compare
LRK53_RS16720 -1.5 -11.2 citrate synthase compare
LRK53_RS09500 -1.5 -8.7 L-threonine 3-dehydrogenase conserved
LRK53_RS08350 -1.5 -1.4 tryptophan synthase subunit beta compare
LRK53_RS09265 -1.4 -1.3 GntR family transcriptional regulator compare
LRK53_RS05435 -1.4 -2.3 GNAT family N-acetyltransferase compare
LRK53_RS04955 -1.4 -8.0 L-fucose:H+ symporter permease compare
LRK53_RS14865 -1.4 -3.2 CBS domain-containing protein compare
LRK53_RS08795 -1.3 -1.5 MBL fold metallo-hydrolase compare
LRK53_RS14110 -1.3 -1.2 GNAT family N-acetyltransferase compare
LRK53_RS00740 -1.3 -2.3 MarR family transcriptional regulator compare
LRK53_RS04445 -1.3 -0.9 glycoside hydrolase family 99-like domain-containing protein compare
LRK53_RS13695 -1.3 -2.0 response regulator compare
LRK53_RS01100 -1.3 -5.4 pteridine reductase compare
LRK53_RS04390 -1.3 -1.9 glycosyltransferase family 2 protein compare
LRK53_RS00200 -1.3 -7.7 phenylalanine 4-monooxygenase compare
LRK53_RS11075 -1.3 -3.3 thymidine phosphorylase family protein compare
LRK53_RS15870 -1.3 -3.5 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
LRK53_RS04055 -1.3 -4.3 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
LRK53_RS09435 -1.3 -0.8 malate dehydrogenase compare
LRK53_RS07470 -1.3 -5.4 TRZ/ATZ family hydrolase compare
LRK53_RS04655 -1.3 -5.9 manganese efflux pump MntP family protein compare
LRK53_RS05560 -1.3 -3.1 threonine/serine exporter family protein compare
LRK53_RS09595 -1.2 -1.5 hypothetical protein compare
LRK53_RS01745 -1.2 -5.0 TetR/AcrR family transcriptional regulator compare
LRK53_RS11610 -1.2 -2.6 low molecular weight phosphotyrosine protein phosphatase compare
LRK53_RS11005 -1.2 -2.1 Tn3 family resolvase compare
LRK53_RS08420 -1.2 -3.2 MerC domain-containing protein compare
LRK53_RS11805 -1.2 -0.8 heavy metal translocating P-type ATPase compare
LRK53_RS08510 -1.2 -6.3 methylthioribulose 1-phosphate dehydratase compare
LRK53_RS06930 -1.1 -1.3 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
LRK53_RS12970 -1.1 -1.7 RNA 2',3'-cyclic phosphodiesterase compare
LRK53_RS06545 -1.1 -1.3 TIGR02099 family protein compare
LRK53_RS07485 -1.1 -3.9 phosphoglycolate phosphatase compare
LRK53_RS09590 -1.1 -1.4 hypothetical protein compare
LRK53_RS05125 -1.1 -8.8 potassium transporter Kup compare
LRK53_RS13780 -1.1 -1.6 acetoacetyl-CoA reductase compare
LRK53_RS00620 -1.1 -3.9 alpha/beta hydrolase fold domain-containing protein compare
LRK53_RS15725 -1.1 -9.1 PTS fructose transporter subunit IIA compare
LRK53_RS15720 -1.1 -6.1 RNase adapter RapZ compare
LRK53_RS06795 -1.1 -2.2 phosphoglycerate dehydrogenase compare
LRK53_RS06910 -1.1 -4.2 GNAT family N-acetyltransferase compare
LRK53_RS17570 -1.1 -1.4 alpha/beta hydrolase compare
LRK53_RS13415 -1.0 -1.1 DUF2059 domain-containing protein compare
LRK53_RS02450 -1.0 -4.2 SPFH domain-containing protein compare
LRK53_RS10085 -1.0 -1.3 TIGR04282 family arsenosugar biosynthesis glycosyltransferase compare
LRK53_RS01945 -1.0 -1.9 hypothetical protein compare
LRK53_RS05725 -1.0 -6.3 glutathione synthase compare
LRK53_RS04475 -1.0 -4.5 electron transfer flavoprotein-ubiquinone oxidoreductase compare
LRK53_RS08160 -1.0 -3.1 DMT family transporter compare
LRK53_RS13510 -1.0 -5.3 polynucleotide adenylyltransferase PcnB compare
LRK53_RS04500 -1.0 -3.8 glycine cleavage system protein GcvH compare
LRK53_RS06820 -1.0 -2.5 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
LRK53_RS18390 -1.0 -1.7 hypothetical protein compare
LRK53_RS11310 -1.0 -5.3 lipopolysaccharide assembly protein LapB compare
LRK53_RS02010 -1.0 -3.0 DNA repair protein RadC compare
LRK53_RS15715 -1.0 -8.6 HPr(Ser) kinase/phosphatase compare
LRK53_RS14770 -1.0 -1.6 SDR family NAD(P)-dependent oxidoreductase compare
LRK53_RS08355 -1.0 -0.7 tryptophan synthase subunit alpha compare
LRK53_RS03715 -1.0 -0.9 cell division ATP-binding protein FtsE compare
LRK53_RS15625 -1.0 -5.4 hemolysin family protein compare
LRK53_RS05265 -1.0 -1.5 hypothetical protein compare
LRK53_RS16315 -1.0 -3.8 FAD-binding protein compare
LRK53_RS04705 -1.0 -3.7 homoserine dehydrogenase compare
LRK53_RS08225 -0.9 -2.4 DeoR/GlpR family DNA-binding transcription regulator compare
LRK53_RS11330 -0.9 -1.3 (d)CMP kinase compare
LRK53_RS06110 -0.9 -1.5 NAD(P) transhydrogenase subunit alpha compare
LRK53_RS17940 -0.9 -5.0 hypothetical protein compare
LRK53_RS09300 -0.9 -5.8 pyridoxal phosphate-dependent aminotransferase compare
LRK53_RS16495 -0.9 -1.1 adenosylhomocysteinase compare
LRK53_RS15250 -0.9 -4.4 membrane assembly protein AsmA compare
LRK53_RS06770 -0.9 -4.3 integration host factor subunit alpha compare
LRK53_RS08910 -0.9 -1.8 endolytic transglycosylase MltG compare
LRK53_RS02845 -0.9 -2.5 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
LRK53_RS12370 -0.9 -1.2 VOC family protein compare


Specific Phenotypes

For 13 genes in this experiment

For nutrient D-Glucose in Rhodanobacter sp000427505 FW510-R12

For nutrient D-Glucose across organisms