Experiment set3S237 for Rhodanobacter sp000427505 FW510-R12

Compare to:

defined media with 20AA_mix

200 most important genes:

  gene name fitness t score description  
LRK53_RS08695 -4.2 -5.7 amidophosphoribosyltransferase compare
LRK53_RS02945 -3.7 -9.1 phosphoribosylamine--glycine ligase compare
LRK53_RS05295 -3.5 -22.5 phosphoribosylformylglycinamidine synthase compare
LRK53_RS05835 -3.3 -3.3 response regulator transcription factor compare
LRK53_RS00370 -3.1 -2.2 DNA starvation/stationary phase protection protein compare
LRK53_RS15625 -3.1 -4.8 hemolysin family protein compare
LRK53_RS04965 -3.1 -5.6 ATP-binding protein compare
LRK53_RS05760 -3.0 -1.5 chemotaxis protein CheW compare
LRK53_RS04975 -3.0 -2.9 response regulator compare
LRK53_RS11185 -2.9 -1.5 DUF4115 domain-containing protein compare
LRK53_RS14865 -2.9 -2.0 CBS domain-containing protein compare
LRK53_RS16900 -2.9 -2.8 ribose-5-phosphate isomerase RpiA compare
LRK53_RS06795 -2.8 -2.7 phosphoglycerate dehydrogenase compare
LRK53_RS04265 -2.7 -2.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK53_RS01735 -2.6 -13.6 TolC family outer membrane protein compare
LRK53_RS00380 -2.6 -1.3 DUF308 domain-containing protein compare
LRK53_RS17105 -2.6 -5.2 ribulose-phosphate 3-epimerase compare
LRK53_RS02595 -2.6 -13.7 efflux RND transporter permease subunit compare
LRK53_RS02585 -2.6 -12.1 efflux RND transporter periplasmic adaptor subunit compare
LRK53_RS14790 -2.5 -1.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
LRK53_RS08525 -2.4 -18.4 amino acid permease conserved
LRK53_RS15655 -2.4 -3.3 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK53_RS01315 -2.4 -17.1 heme o synthase compare
LRK53_RS14785 -2.3 -1.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
LRK53_RS03745 -2.2 -5.9 peptidoglycan DD-metalloendopeptidase family protein compare
LRK53_RS00525 -2.2 -2.1 glycosyltransferase family 4 protein compare
LRK53_RS14800 -2.2 -1.5 DUF1631 domain-containing protein compare
LRK53_RS11155 -2.2 -3.3 glutamine-hydrolyzing GMP synthase compare
LRK53_RS01310 -2.1 -14.3 COX15/CtaA family protein compare
LRK53_RS01095 -2.1 -1.5 lipid A biosynthesis acyltransferase compare
LRK53_RS02600 -2.1 -12.9 efflux RND transporter permease subunit compare
LRK53_RS05390 -2.1 -6.2 serine hydroxymethyltransferase compare
LRK53_RS09750 -1.9 -9.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
LRK53_RS06715 -1.9 -2.2 [protein-PII] uridylyltransferase compare
LRK53_RS06010 -1.9 -11.6 pilin compare
LRK53_RS09520 -1.8 -2.0 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK53_RS01305 -1.8 -8.8 hypothetical protein compare
LRK53_RS03675 -1.8 -12.9 glucokinase compare
LRK53_RS07530 -1.8 -11.3 N-acetylornithine carbamoyltransferase compare
LRK53_RS06850 -1.7 -1.2 protein translocase subunit SecD compare
LRK53_RS14400 -1.7 -1.2 TetR family transcriptional regulator compare
LRK53_RS07545 -1.7 -7.6 argininosuccinate synthase compare
LRK53_RS02135 -1.7 -2.2 hypothetical protein compare
LRK53_RS17110 -1.7 -12.6 transketolase compare
LRK53_RS07555 -1.7 -9.1 acetylglutamate kinase compare
LRK53_RS11005 -1.7 -2.4 Tn3 family resolvase compare
LRK53_RS11610 -1.7 -3.1 low molecular weight phosphotyrosine protein phosphatase compare
LRK53_RS04185 -1.7 -3.1 dihydrolipoyllysine-residue acetyltransferase compare
LRK53_RS09500 -1.7 -8.8 L-threonine 3-dehydrogenase conserved
LRK53_RS05970 -1.7 -8.8 glycosyltransferase family 4 protein compare
LRK53_RS07560 -1.7 -7.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
LRK53_RS03160 -1.6 -2.2 homoserine kinase compare
LRK53_RS01300 -1.6 -12.1 SURF1 family protein compare
LRK53_RS04270 -1.6 -3.9 c-type cytochrome compare
LRK53_RS09595 -1.6 -1.8 hypothetical protein compare
LRK53_RS01570 -1.6 -1.8 DNA polymerase I compare
LRK53_RS08475 -1.6 -4.9 imidazole glycerol phosphate synthase subunit HisH compare
LRK53_RS05680 -1.5 -1.5 pyrroline-5-carboxylate reductase compare
LRK53_RS13020 -1.5 -1.4 sulfur transferase domain-containing protein compare
LRK53_RS05965 -1.5 -8.0 glycosyltransferase family 2 protein compare
LRK53_RS12585 -1.5 -3.1 MotA/TolQ/ExbB proton channel family protein compare
LRK53_RS08480 -1.5 -3.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LRK53_RS04960 -1.5 -8.7 GH92 family glycosyl hydrolase compare
LRK53_RS15250 -1.5 -5.5 membrane assembly protein AsmA compare
LRK53_RS08470 -1.4 -2.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
LRK53_RS08465 -1.4 -7.0 histidinol-phosphate transaminase compare
LRK53_RS03095 -1.4 -2.4 dihydroxy-acid dehydratase compare
LRK53_RS04990 -1.4 -6.7 sigma-54 dependent transcriptional regulator compare
LRK53_RS07565 -1.4 -6.4 argininosuccinate lyase compare
LRK53_RS07580 -1.4 -2.4 IS256 family transposase compare
LRK53_RS13260 -1.4 -1.9 NAD(P)-dependent alcohol dehydrogenase compare
LRK53_RS04075 -1.4 -9.4 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK53_RS11380 -1.4 -5.5 molecular chaperone DnaJ compare
LRK53_RS16335 -1.4 -3.3 PepSY domain-containing protein compare
LRK53_RS06000 -1.4 -6.0 hypothetical protein compare
LRK53_RS07280 -1.4 -1.6 YkgJ family cysteine cluster protein compare
LRK53_RS06005 -1.3 -8.4 tetratricopeptide repeat protein compare
LRK53_RS05995 -1.3 -7.4 oligosaccharide flippase family protein compare
LRK53_RS16710 -1.3 -12.0 penicillin-binding protein 1A compare
LRK53_RS07020 -1.3 -1.9 HlyD family efflux transporter periplasmic adaptor subunit compare
LRK53_RS07980 -1.3 -1.5 GNAT family N-acetyltransferase compare
LRK53_RS03110 -1.3 -3.7 3-isopropylmalate dehydratase large subunit compare
LRK53_RS08460 -1.3 -4.7 histidinol dehydrogenase compare
LRK53_RS15945 -1.3 -4.4 bifunctional aspartate kinase/diaminopimelate decarboxylase compare
LRK53_RS04390 -1.3 -1.9 glycosyltransferase family 2 protein compare
LRK53_RS11190 -1.3 -2.1 type IV pilus biogenesis/stability protein PilW compare
LRK53_RS03085 -1.3 -3.4 biosynthetic-type acetolactate synthase large subunit compare
LRK53_RS17205 -1.2 -3.6 fumarylacetoacetate hydrolase family protein compare
LRK53_RS07550 -1.2 -2.4 acetylornithine deacetylase compare
LRK53_RS16895 -1.2 -6.1 EVE domain-containing protein compare
LRK53_RS09265 -1.2 -1.1 GntR family transcriptional regulator compare
LRK53_RS16330 -1.2 -5.0 TonB-dependent receptor plug domain-containing protein compare
LRK53_RS13695 -1.2 -1.7 response regulator compare
LRK53_RS04055 -1.2 -3.8 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
LRK53_RS04190 -1.2 -3.2 dihydrolipoyl dehydrogenase compare
LRK53_RS04285 -1.2 -4.4 phosphoglycerate kinase compare
LRK53_RS08490 -1.2 -3.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
LRK53_RS16740 -1.2 -4.8 RidA family protein compare
LRK53_RS16775 -1.2 -6.0 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
LRK53_RS03105 -1.2 -5.2 3-isopropylmalate dehydratase small subunit compare
LRK53_RS05220 -1.2 -2.6 nucleoside deaminase compare
LRK53_RS00945 -1.2 -1.5 helix-turn-helix domain-containing protein compare
LRK53_RS01530 -1.2 -0.8 YiiD C-terminal domain-containing protein compare
LRK53_RS04445 -1.1 -0.8 glycoside hydrolase family 99-like domain-containing protein compare
LRK53_RS18025 -1.1 -1.3 hypothetical protein compare
LRK53_RS03720 -1.1 -1.7 permease-like cell division protein FtsX compare
LRK53_RS05785 -1.1 -2.6 inositol-phosphate phosphatase compare
LRK53_RS04305 -1.1 -3.2 hypothetical protein compare
LRK53_RS12580 -1.1 -2.0 biopolymer transporter ExbD compare
LRK53_RS02455 -1.1 -1.9 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
LRK53_RS01505 -1.1 -1.6 hotdog fold thioesterase compare
LRK53_RS07450 -1.1 -1.0 50S ribosomal protein L19 compare
LRK53_RS06770 -1.1 -4.4 integration host factor subunit alpha compare
LRK53_RS09845 -1.1 -7.4 asparagine synthase B compare
LRK53_RS03125 -1.1 -5.9 hypothetical protein compare
LRK53_RS16780 -1.1 -6.0 ABC transporter ATP-binding protein compare
LRK53_RS09710 -1.1 -2.7 high frequency lysogenization protein HflD compare
LRK53_RS01285 -1.0 -4.3 hypothetical protein compare
LRK53_RS16290 -1.0 -1.8 division/cell wall cluster transcriptional repressor MraZ compare
LRK53_RS11355 -1.0 -4.0 transcription elongation factor GreA compare
LRK53_RS08455 -1.0 -1.7 ATP phosphoribosyltransferase compare
LRK53_RS03090 -1.0 -5.6 ketol-acid reductoisomerase compare
LRK53_RS12605 -1.0 -1.6 hypothetical protein compare
LRK53_RS15705 -1.0 -4.8 RNA polymerase factor sigma-54 compare
LRK53_RS15865 -1.0 -1.9 hypothetical protein compare
LRK53_RS07925 -1.0 -3.1 metalloregulator ArsR/SmtB family transcription factor compare
LRK53_RS17395 -1.0 -3.4 PepSY domain-containing protein compare
LRK53_RS09830 -1.0 -1.4 phosphoglycerate mutase compare
LRK53_RS04750 -1.0 -2.3 L-serine ammonia-lyase compare
LRK53_RS14290 -1.0 -1.7 penicillin acylase family protein compare
LRK53_RS18460 -1.0 -1.9 hypothetical protein compare
LRK53_RS14435 -1.0 -1.3 hypothetical protein compare
LRK53_RS00070 -1.0 -8.2 glutamate synthase-related protein compare
LRK53_RS13450 -1.0 -3.7 FKBP-type peptidyl-prolyl cis-trans isomerase compare
LRK53_RS11425 -1.0 -1.7 RnfH family protein compare
LRK53_RS16465 -1.0 -1.8 hypothetical protein compare
LRK53_RS18045 -0.9 -1.4 DUF6429 family protein compare
LRK53_RS11025 -0.9 -1.8 hypothetical protein compare
LRK53_RS17145 -0.9 -2.1 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK53_RS06545 -0.9 -1.1 TIGR02099 family protein compare
LRK53_RS03115 -0.9 -4.4 branched-chain amino acid transaminase compare
LRK53_RS10190 -0.9 -2.5 chaperonin GroEL compare
LRK53_RS05065 -0.9 -3.3 NAD(P)-dependent alcohol dehydrogenase compare
LRK53_RS02300 -0.9 -1.6 hypothetical protein compare
LRK53_RS01585 -0.9 -0.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LRK53_RS16160 -0.9 -1.4 hypothetical protein compare
LRK53_RS07570 -0.9 -2.9 glutamate 5-kinase compare
LRK53_RS08420 -0.9 -2.5 MerC domain-containing protein compare
LRK53_RS04890 -0.9 -1.8 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
LRK53_RS08485 -0.9 -2.3 imidazole glycerol phosphate synthase subunit HisF compare
LRK53_RS12980 -0.9 -0.9 hypothetical protein compare
LRK53_RS06175 -0.9 -1.2 acylphosphatase compare
LRK53_RS07645 -0.9 -2.4 SDR family oxidoreductase compare
LRK53_RS08350 -0.9 -1.4 tryptophan synthase subunit beta compare
LRK53_RS03155 -0.9 -2.4 threonine synthase compare
LRK53_RS16490 -0.9 -6.1 phosphoenolpyruvate carboxylase compare
LRK53_RS00695 -0.9 -4.4 TonB-dependent vitamin B12 receptor compare
LRK53_RS05765 -0.9 -0.8 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
LRK53_RS11330 -0.9 -1.1 (d)CMP kinase compare
LRK53_RS16165 -0.9 -2.2 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
LRK53_RS10040 -0.9 -1.3 DUF2282 domain-containing protein compare
LRK53_RS01295 -0.9 -4.5 twin transmembrane helix small protein compare
LRK53_RS09085 -0.9 -0.9 30S ribosomal protein S15 compare
LRK53_RS16755 -0.9 -7.7 VacJ family lipoprotein compare
LRK53_RS17570 -0.8 -1.1 alpha/beta hydrolase compare
LRK53_RS13025 -0.8 -1.9 DMT family transporter compare
LRK53_RS05505 -0.8 -2.1 ABC transporter ATP-binding protein compare
LRK53_RS03165 -0.8 -1.4 homoserine dehydrogenase compare
LRK53_RS03545 -0.8 -1.2 DUF2249 domain-containing protein compare
LRK53_RS16770 -0.8 -6.1 outer membrane lipid asymmetry maintenance protein MlaD compare
LRK53_RS15195 -0.8 -2.1 flagellar biosynthesis anti-sigma factor FlgM compare
LRK53_RS17350 -0.8 -1.9 hypothetical protein compare
LRK53_RS03225 -0.8 -1.9 hypothetical protein compare
LRK53_RS03715 -0.8 -0.7 cell division ATP-binding protein FtsE compare
LRK53_RS05635 -0.8 -1.8 YbjQ family protein compare
LRK53_RS15720 -0.8 -4.5 RNase adapter RapZ compare
LRK53_RS07575 -0.8 -4.1 glutamate-5-semialdehyde dehydrogenase compare
LRK53_RS11955 -0.8 -4.4 hypothetical protein compare
LRK53_RS08795 -0.8 -1.1 MBL fold metallo-hydrolase compare
LRK53_RS16485 -0.8 -1.8 GIY-YIG nuclease family protein compare
LRK53_RS09905 -0.8 -0.9 translesion DNA synthesis-associated protein ImuA compare
LRK53_RS14355 -0.8 -2.4 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase compare
LRK53_RS09090 -0.8 -4.4 polyribonucleotide nucleotidyltransferase compare
LRK53_RS07915 -0.8 -3.6 methionine synthase compare
LRK53_RS02785 -0.8 -2.0 ATP-dependent helicase HrpB compare
LRK53_RS00065 -0.8 -2.7 glutamate synthase subunit beta compare
LRK53_RS04955 -0.8 -5.0 L-fucose:H+ symporter permease compare
LRK53_RS16540 -0.8 -3.1 tRNA-Gly compare
LRK53_RS11960 -0.8 -1.1 response regulator compare
LRK53_RS02285 -0.8 -1.0 oxygen-dependent coproporphyrinogen oxidase compare
LRK53_RS13375 -0.8 -5.7 acetyl-CoA C-acyltransferase compare
LRK53_RS03200 -0.8 -3.2 UbiA family prenyltransferase compare
LRK53_RS03120 -0.8 -2.7 2-isopropylmalate synthase compare
LRK53_RS04200 -0.8 -1.0 hypothetical protein compare
LRK53_RS12680 -0.8 -5.2 polyhydroxyalkanoate synthesis repressor PhaR compare
LRK53_RS00215 -0.8 -1.9 TetR/AcrR family transcriptional regulator compare
LRK53_RS18995 -0.7 -1.4 hypothetical protein compare
LRK53_RS12000 -0.7 -2.1 sigma-E factor negative regulatory protein compare
LRK53_RS18170 -0.7 -1.9 HAMP domain-containing histidine kinase compare
LRK53_RS16055 -0.7 -2.7 hypothetical protein compare


Specific Phenotypes

For 19 genes in this experiment

For nutrient D-Glucose in Rhodanobacter sp000427505 FW510-R12

For nutrient D-Glucose across organisms