Experiment set3S233 for Escherichia coli ECRC98

Compare to:

WM_K30

200 most important genes:

  gene name fitness t score description  
JDDGAC_06145 prs -6.3 -2.7 ribose-phosphate diphosphokinase compare
JDDGAC_15560 cybC -5.9 -2.9 cytochrome b562 compare
JDDGAC_25435 guaB -5.1 -5.0 IMP dehydrogenase compare
JDDGAC_21580 lptC -4.7 -1.5 LPS export ABC transporter periplasmic protein LptC compare
JDDGAC_27425 yeiL -4.6 -1.1 Regulatory protein YeiL compare
JDDGAC_11390 tnp-ISAs1 -4.6 -1.6 ISAs1 family transposase compare
JDDGAC_08445 lomR -4.5 -1.1 Ail/Lom family protein compare
JDDGAC_07825 -4.5 -1.1 Membrane protein compare
JDDGAC_21780 deaD -4.4 -5.3 ATP-dependent RNA helicase DeaD compare
JDDGAC_13185 -4.2 -2.2 phage holin, lambda family compare
JDDGAC_01695 ydiV -4.1 -2.5 anti-FlhDC factor compare
JDDGAC_06125 prfA -4.1 -1.4 peptide chain release factor 1 compare
JDDGAC_15900 miaA -3.9 -1.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
JDDGAC_15870 purA -3.8 -2.4 adenylosuccinate synthase compare
JDDGAC_03640 uxaB -3.8 -3.6 tagaturonate reductase compare
JDDGAC_02200 lacZ -3.7 -2.1 Beta-galactosidase/beta-glucuronidase compare
JDDGAC_27740 -3.6 -1.2 regulator compare
JDDGAC_11470 cysS -3.5 -0.9 cysteine--tRNA ligase compare
JDDGAC_05820 eCs1768 -3.5 -1.2 DNA-binding protein compare
JDDGAC_03730 ydeQ -3.5 -1.2 Uncharacterized fimbrial-like protein YdeQ compare
JDDGAC_25440 guaA -3.3 -2.1 glutamine-hydrolyzing GMP synthase compare
JDDGAC_10355 acrZ -3.3 -1.1 multidrug efflux pump accessory protein AcrZ compare
JDDGAC_05065 rnb -3.3 -4.6 exoribonuclease II compare
JDDGAC_13175 rzpD -3.2 -1.1 prophage endopeptidase RzpD compare
JDDGAC_15675 cysQ -3.1 -5.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
JDDGAC_16510 soxS_A12S -3.1 -2.3 regulatory protein SoxS compare
JDDGAC_25875 purC -3.1 -5.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
JDDGAC_27270 dsbE -3.1 -1.4 thiol:disulfide interchange protein DsbE compare
JDDGAC_09390 trxB -3.1 -1.5 thioredoxin-disulfide reductase compare
JDDGAC_19280 rfaG -3.1 -7.9 Lipopolysaccharide core biosynthesis protein RfaG compare
JDDGAC_24915 rluD -3.1 -6.8 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
JDDGAC_24045 cysH -3.1 -7.3 phosphoadenosine phosphosulfate reductase compare
JDDGAC_14270 rsmH -3.0 -1.7 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
JDDGAC_14440 apaH -2.9 -2.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
JDDGAC_04835 -2.9 -1.8 Murein peptide amidase A compare
JDDGAC_01040 prc -2.8 -6.4 carboxy terminal-processing peptidase compare
JDDGAC_03630 yneG -2.8 -1.5 Uncharacterized protein YneG compare
JDDGAC_19320 rfaF -2.8 -1.7 ADP-heptose--LPS heptosyltransferase RfaF compare
JDDGAC_01225 yeaQ -2.8 -1.3 UPF0410 protein YeaQ compare
JDDGAC_25135 purL -2.7 -12.6 phosphoribosylformylglycinamidine synthase compare
JDDGAC_21770 nlpI -2.7 -8.7 lipoprotein NlpI compare
JDDGAC_14795 serB -2.7 -3.6 phosphoserine phosphatase compare
JDDGAC_29980 sopA -2.7 -0.9 plasmid-partitioning protein SopA compare
JDDGAC_25690 -2.7 -1.9 acyltransferase compare
JDDGAC_16940 purD -2.6 -9.1 Phosphoribosylamine--glycine ligase compare
JDDGAC_24160 rpoS -2.6 -15.1 RNA polymerase sigma factor RpoS compare
JDDGAC_06615 nudJ -2.6 -2.1 phosphatase NudJ compare
JDDGAC_09100 serC -2.6 -7.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
JDDGAC_16935 purH -2.6 -10.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
JDDGAC_06120 prmC -2.6 -1.5 peptide chain release factor N(5)-glutamine methyltransferase compare
JDDGAC_04170 ydcA -2.6 -1.6 Uncharacterized protein YdcA compare
JDDGAC_04725 ynaL -2.6 -1.2 Protein YnaL compare
JDDGAC_25045 rseA -2.5 -3.8 anti-sigma-E factor RseA compare
JDDGAC_13940 dksA -2.5 -5.0 RNA polymerase-binding protein DksA compare
JDDGAC_12140 parD -2.5 -1.8 Antitoxin ParD compare
JDDGAC_29425 -2.5 -0.9 Prophage protein compare
JDDGAC_05985 galU -2.5 -2.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
JDDGAC_26675 purF -2.5 -8.6 amidophosphoribosyltransferase compare
JDDGAC_15050 -2.5 -1.2 Putative transposase, YhgA-like compare
JDDGAC_06130 hemA -2.5 -3.4 glutamyl-tRNA reductase compare
JDDGAC_20740 aroK -2.4 -2.6 shikimate kinase AroK compare
JDDGAC_24035 cysJ -2.4 -7.6 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
JDDGAC_26340 ypdK -2.4 -1.0 membrane protein YpdK compare
JDDGAC_02300 mdtI -2.4 -1.6 multidrug/spermidine efflux SMR transporter subunit MdtI compare
JDDGAC_00825 nudB -2.4 -1.1 dihydroneopterin triphosphate diphosphatase compare
JDDGAC_10205 -2.3 -1.1 Putative bacteriophage protein (Gene 65) compare
JDDGAC_07485 csgC -2.3 -2.4 curli assembly protein CsgC compare
JDDGAC_25755 purM -2.3 -6.5 Phosphoribosylformylglycinamidine cyclo-ligase compare
JDDGAC_03900 espR1 -2.3 -1.9 T3SS effector leucine-rich repeat protein EspR1 compare
JDDGAC_06305 minE -2.3 -0.9 cell division topological specificity factor MinE compare
JDDGAC_01205 dmlR -2.3 -1.4 DNA-binding transcriptional regulator DmlR compare
JDDGAC_28130 fimA -2.2 -2.4 Uncharacterized fimbrial-like protein YehD compare
JDDGAC_01860 lpp -2.2 -3.0 murein lipoprotein Lpp compare
JDDGAC_29395 eCs1768 -2.2 -1.5 phage replisome organizer compare
JDDGAC_01035 proQ -2.2 -4.9 RNA chaperone ProQ compare
JDDGAC_04850 tyrR -2.2 -1.5 transcriptional regulator TyrR compare
JDDGAC_18405 mnmG -2.2 -3.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
JDDGAC_00910 zwf -2.2 -1.6 glucose-6-phosphate dehydrogenase compare
JDDGAC_05735 -2.2 -3.4 phage tail protein compare
JDDGAC_08845 ompA -2.1 -5.3 outer membrane protein A compare
JDDGAC_20355 -2.1 -2.6 DUF1778 domain-containing protein compare
JDDGAC_15895 hfq -2.1 -5.1 RNA chaperone Hfq compare
JDDGAC_10220 -2.1 -3.5 holin compare
JDDGAC_11485 purE -2.0 -2.8 N5-carboxyaminoimidazole ribonucleotide mutase compare
JDDGAC_02170 add -2.0 -1.4 adenosine deaminase compare
JDDGAC_14435 apaG -2.0 -1.3 Co2+/Mg2+ efflux protein ApaG compare
JDDGAC_10570 sucC -2.0 -2.0 ADP-forming succinate--CoA ligase subunit beta compare
JDDGAC_07480 -2.0 -0.7 Uncharacterized protein YmdA compare
JDDGAC_13015 -2.0 -1.7 Phage-associated protein compare
JDDGAC_25025 srmB -2.0 -6.1 ATP-dependent RNA helicase SrmB compare
JDDGAC_00640 ftnB -2.0 -2.3 non-heme ferritin-like protein compare
JDDGAC_06135 lolB -2.0 -1.6 lipoprotein insertase outer membrane protein LolB compare
JDDGAC_00840 ruvC -2.0 -2.2 crossover junction endodeoxyribonuclease RuvC compare
JDDGAC_06295 minC -1.9 -1.4 septum site-determining protein MinC compare
JDDGAC_13180 -1.9 -2.4 lysozyme compare
JDDGAC_07155 ndh -1.9 -2.2 NADH-quinone dehydrogenase compare
JDDGAC_29885 tnp-IS911 -1.9 -1.5 IS3 family IS911 transposase compare
JDDGAC_02145 rsxA -1.9 -1.2 electron transport complex subunit RsxA compare
JDDGAC_14695 thrC -1.9 -4.9 threonine synthase compare
JDDGAC_06300 minD -1.8 -1.7 septum site-determining protein MinD compare
JDDGAC_05250 nleG -1.8 -1.1 T3SS effector E3 ubiquitin-protein ligase NleG compare
JDDGAC_10285 -1.8 -0.8 Cell division protein ZapA compare
JDDGAC_28970 -1.8 -0.7 DNA-binding protein compare
JDDGAC_10225 -1.8 -0.9 DUF3927 domain-containing protein compare
JDDGAC_21265 yhdV -1.7 -2.2 Uncharacterized protein YhdV compare
JDDGAC_15525 mgtL -1.7 -1.0 mgtA leader peptide compare
JDDGAC_14420 surA -1.7 -2.2 peptidylprolyl isomerase SurA compare
JDDGAC_30195 repA -1.7 -1.0 incFII family plasmid replication initiator RepA compare
JDDGAC_25955 eutS -1.7 -1.5 Bacterial microcompartment shell protein EutS compare
JDDGAC_21520 arcB -1.7 -3.0 aerobic respiration two-component sensor histidine kinase ArcB compare
JDDGAC_05165 yciK -1.7 -5.3 YciK family oxidoreductase compare
JDDGAC_23670 ptsP -1.7 -10.2 phosphoenolpyruvate--protein phosphotransferase compare
JDDGAC_02225 ydgA -1.7 -1.6 Protein YdgA compare
JDDGAC_23100 serA -1.7 -6.2 phosphoglycerate dehydrogenase compare
JDDGAC_10565 sucD -1.7 -3.0 succinate--CoA ligase subunit alpha compare
JDDGAC_05500 -1.7 -2.0 hypothetical protein compare
JDDGAC_14430 rsmA -1.7 -1.9 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA compare
JDDGAC_30055 yubL -1.7 -1.3 UPF0401 protein YubL compare
JDDGAC_05900 tonB -1.7 -4.3 TonB system transport protein TonB compare
JDDGAC_26210 tnpA -1.6 -3.3 IS200/IS605 family transposase compare
JDDGAC_20115 hicB -1.6 -2.2 toxin-antitoxin system HicB family antitoxin compare
JDDGAC_08730 ydfB -1.6 -1.2 Uncharacterized protein YdfB compare
JDDGAC_13000 -1.6 -1.3 AAA family ATPase compare
JDDGAC_07640 -1.6 -1.0 DNA-binding protein compare
JDDGAC_06310 -1.6 -1.1 autotransporter outer membrane beta-barrel domain-containing protein compare
JDDGAC_30320 gspI -1.5 -2.7 type II secretion system minor pseudopilin GspI compare
JDDGAC_00400 sdiA -1.5 -4.0 transcriptional regulator SdiA compare
JDDGAC_01165 yeaY -1.5 -1.5 Slp family lipoprotein YeaY compare
JDDGAC_11365 -1.5 -1.5 Uncharacterized conserved protein compare
JDDGAC_10450 cpoB -1.5 -2.9 cell division protein CpoB compare
JDDGAC_23700 ppdC -1.5 -1.6 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
JDDGAC_23495 ygeK -1.5 -1.4 Uncharacterized response regulatory protein YgeK compare
JDDGAC_11425 fimZ -1.5 -2.2 fimbria biosynthesis transcriptional regulator FimZ compare
JDDGAC_10465 tolA -1.5 -1.6 cell envelope integrity protein TolA compare
JDDGAC_26485 Arg_trna -1.5 -1.7 tRNA-Arg(cct) compare
JDDGAC_18945 grlA -1.4 -1.2 type III secretion system LEE transcriptional regulator GrlA compare
JDDGAC_19895 gadW -1.4 -5.1 acid resistance transcriptional activator GadW compare
JDDGAC_06140 ispE -1.4 -0.7 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase compare
JDDGAC_15570 yjgA -1.4 -3.7 ribosome-associated protein compare
JDDGAC_27880 -1.4 -1.0 Phage protein compare
JDDGAC_05850 -1.4 -1.0 hypothetical protein compare
JDDGAC_19040 sepL -1.4 -1.1 type III secretion system LEE gatekeeper SepL compare
JDDGAC_28590 wzzB -1.4 -5.0 LPS O-antigen chain length determinant protein WzzB compare
JDDGAC_03650 lsrG -1.4 -1.4 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
JDDGAC_00525 -1.4 -2.0 derepression protein compare
JDDGAC_10470 tolR -1.4 -2.1 colicin uptake protein TolR compare
JDDGAC_04565 -1.4 -1.0 DUF1364 domain-containing protein compare
JDDGAC_10870 miaB -1.4 -5.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
JDDGAC_10960 ybeQ -1.3 -1.1 Sel1-repeat-containing protein YbeQ compare
JDDGAC_26215 -1.3 -0.8 RNA-guided endonuclease TnpB family protein compare
JDDGAC_20530 glgA -1.3 -7.1 glycogen synthase GlgA compare
JDDGAC_25680 -1.3 -2.3 hypothetical protein compare
JDDGAC_10690 yafF -1.3 -0.9 ISAs1 family transposase compare
JDDGAC_09505 ybjQ -1.3 -1.1 UPF0145 protein YbjQ compare
JDDGAC_20745 aroB -1.3 -2.9 3-dehydroquinate synthase compare
JDDGAC_09835 rhtA -1.3 -1.4 threonine/homoserine exporter RhtA compare
JDDGAC_17730 glnL -1.3 -1.2 nitrogen regulation protein NR(II) compare
JDDGAC_07150 ycfJ -1.3 -3.3 Uncharacterized protein YcfJ compare
JDDGAC_07740 terZ -1.3 -2.4 tellurium resistance-associated protein TerZ compare
JDDGAC_19005 espH -1.3 -2.7 type III secretion system LEE effector EspH compare
JDDGAC_11490 purK -1.3 -4.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
JDDGAC_08790 yccX -1.3 -1.2 acylphosphatase compare
JDDGAC_01405 topB -1.3 -4.0 DNA topoisomerase III compare
JDDGAC_02475 dnaC -1.3 -0.6 DNA replication protein DnaC compare
JDDGAC_00190 vsr -1.2 -2.4 VSPR family DNA mismatch endonuclease compare
JDDGAC_24320 gutQ -1.2 -3.4 arabinose-5-phosphate isomerase GutQ compare
JDDGAC_21190 yrdB -1.2 -1.9 Uncharacterized protein YrdB compare
JDDGAC_27065 yfaE -1.2 -0.7 ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE compare
JDDGAC_07275 rluC -1.2 -2.3 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
JDDGAC_09920 espX2 -1.2 -0.8 type III secretion system effector EspX2 compare
JDDGAC_01690 nlpC -1.2 -1.7 putative endopeptidase NlpC compare
JDDGAC_06185 emtA -1.2 -2.4 membrane-bound lytic murein transglycosylase EmtA compare
JDDGAC_25750 purN -1.2 -3.7 phosphoribosylglycinamide formyltransferase compare
JDDGAC_20125 ptsH -1.2 -1.8 HPr family phosphocarrier protein compare
JDDGAC_29110 -1.2 -1.7 host specificity protein J compare
JDDGAC_11375 -1.2 -0.7 hypothetical protein compare
JDDGAC_23805 fucU -1.2 -2.6 L-fucose mutarotase compare
JDDGAC_25975 pta -1.2 -2.4 phosphate acetyltransferase compare
JDDGAC_04485 -1.2 -0.6 Holin compare
JDDGAC_20515 glgB -1.2 -7.9 1,4-alpha-glucan branching enzyme compare
JDDGAC_14700 thrB -1.2 -4.3 homoserine kinase compare
JDDGAC_20640 feoC -1.2 -1.4 [Fe-S]-dependent transcriptional repressor FeoC compare
JDDGAC_05135 -1.2 -1.2 Protein, C-ter, truncated protein compare
JDDGAC_07900 opgE -1.2 -1.2 phosphoethanolamine transferase compare
JDDGAC_20705 nudE -1.2 -2.3 ADP compounds hydrolase NudE compare
JDDGAC_24115 cysC -1.2 -4.3 Adenylyl-sulfate kinase compare
JDDGAC_08325 torT -1.2 -2.5 TMAO reductase system periplasmic protein TorT compare
JDDGAC_13105 -1.2 -1.1 Phage Mu small tail protein compare
JDDGAC_10540 -1.2 -0.7 DUF4387 domain-containing protein compare
JDDGAC_28380 udk -1.2 -3.1 uridine kinase conserved
JDDGAC_09695 rimO -1.2 -3.3 30S ribosomal protein S12 methylthiotransferase RimO compare
JDDGAC_13910 fhuC -1.2 -2.0 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
JDDGAC_28195 yegW -1.2 -1.1 Uncharacterized HTH-type transcriptional regulator YegW compare
JDDGAC_00935 yebF -1.1 -1.0 Protein YebF compare
JDDGAC_25315 hscA -1.1 -0.6 Fe-S protein assembly chaperone HscA compare
JDDGAC_24530 alaE -1.1 -2.7 L-alanine exporter AlaE compare
JDDGAC_05780 -1.1 -1.2 hypothetical protein compare
JDDGAC_13930 thpR -1.1 -4.0 RNA 2',3'-cyclic phosphodiesterase compare
JDDGAC_26390 evgA -1.1 -1.2 acid-sensing system DNA-binding response regulator EvgA compare
JDDGAC_00660 otsB -1.1 -2.7 trehalose-phosphatase compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC98 in phage experiments

For phage Phage across organisms