Experiment set3S232 for Rhodanobacter sp000427505 FW510-R12

Compare to:

R2A_PIPES no stress control

200 most important genes:

  gene name fitness t score description  
LRK53_RS10035 -2.6 -1.8 hypothetical protein compare
LRK53_RS05125 -2.4 -13.6 potassium transporter Kup compare
LRK53_RS09085 -2.2 -2.1 30S ribosomal protein S15 compare
LRK53_RS03745 -2.1 -7.7 peptidoglycan DD-metalloendopeptidase family protein compare
LRK53_RS11155 -2.1 -4.2 glutamine-hydrolyzing GMP synthase compare
LRK53_RS06820 -2.1 -3.3 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
LRK53_RS17900 -2.0 -1.4 dUTP diphosphatase compare
LRK53_RS16520 -2.0 -3.0 HAMP domain-containing histidine kinase compare
LRK53_RS04185 -1.8 -3.7 dihydrolipoyllysine-residue acetyltransferase compare
LRK53_RS00915 -1.7 -1.5 Na+/H+ antiporter subunit C compare
LRK53_RS07020 -1.7 -2.3 HlyD family efflux transporter periplasmic adaptor subunit compare
LRK53_RS03410 -1.7 -2.8 SCP2 sterol-binding domain-containing protein compare
LRK53_RS04390 -1.7 -1.6 glycosyltransferase family 2 protein compare
LRK53_RS11285 -1.6 -2.0 tRNA-binding protein compare
LRK53_RS16635 -1.6 -2.3 efflux RND transporter periplasmic adaptor subunit compare
LRK53_RS01585 -1.6 -1.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LRK53_RS12585 -1.6 -3.4 MotA/TolQ/ExbB proton channel family protein compare
LRK53_RS17895 -1.6 -1.2 phosphomannomutase/phosphoglucomutase compare
LRK53_RS13180 -1.5 -1.7 hypothetical protein compare
LRK53_RS05865 -1.5 -3.6 response regulator transcription factor compare
LRK53_RS11790 -1.5 -1.7 cbb3-type cytochrome c oxidase subunit 3 compare
LRK53_RS04370 -1.5 -5.8 cystathionine gamma-synthase compare
LRK53_RS04075 -1.4 -9.9 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK53_RS05680 -1.4 -2.1 pyrroline-5-carboxylate reductase compare
LRK53_RS09265 -1.4 -1.2 GntR family transcriptional regulator compare
LRK53_RS14790 -1.4 -1.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
LRK53_RS12740 -1.4 -2.5 cytochrome c-type biogenesis protein CcmH compare
LRK53_RS15755 -1.3 -2.0 SDR family oxidoreductase compare
LRK53_RS07695 -1.3 -2.5 enoyl-CoA hydratase-related protein compare
LRK53_RS10270 -1.3 -1.5 alpha/beta fold hydrolase compare
LRK53_RS01630 -1.3 -2.6 protein-disulfide reductase DsbD compare
LRK53_RS00940 -1.3 -1.2 hypothetical protein compare
LRK53_RS09655 -1.3 -5.9 ribonuclease R compare
LRK53_RS15705 -1.3 -5.8 RNA polymerase factor sigma-54 compare
LRK53_RS12250 -1.3 -6.1 Mth938-like domain-containing protein compare
LRK53_RS11330 -1.2 -1.2 (d)CMP kinase compare
LRK53_RS03720 -1.2 -2.0 permease-like cell division protein FtsX compare
LRK53_RS06715 -1.2 -1.7 [protein-PII] uridylyltransferase compare
LRK53_RS00380 -1.2 -0.9 DUF308 domain-containing protein compare
LRK53_RS05265 -1.2 -1.5 hypothetical protein compare
LRK53_RS01235 -1.1 -1.6 monovalent cation:proton antiporter-2 (CPA2) family protein compare
LRK53_RS03695 -1.1 -6.9 glutamate--cysteine ligase compare
LRK53_RS09830 -1.1 -1.4 phosphoglycerate mutase compare
LRK53_RS14770 -1.1 -1.9 SDR family NAD(P)-dependent oxidoreductase compare
LRK53_RS11425 -1.1 -2.0 RnfH family protein compare
LRK53_RS05725 -1.1 -6.4 glutathione synthase compare
LRK53_RS14895 -1.1 -1.2 STAS domain-containing protein compare
LRK53_RS03185 -1.1 -1.4 S-ribosylhomocysteine lyase compare
LRK53_RS05810 -1.1 -2.2 DUF4097 family beta strand repeat-containing protein compare
LRK53_RS07450 -1.1 -1.0 50S ribosomal protein L19 compare
LRK53_RS13940 -1.1 -1.5 peptide-methionine (R)-S-oxide reductase MsrB compare
LRK53_RS02285 -1.1 -1.2 oxygen-dependent coproporphyrinogen oxidase compare
LRK53_RS09435 -1.0 -0.7 malate dehydrogenase compare
LRK53_RS08795 -1.0 -1.3 MBL fold metallo-hydrolase compare
LRK53_RS08910 -1.0 -1.9 endolytic transglycosylase MltG compare
LRK53_RS06175 -1.0 -1.5 acylphosphatase compare
LRK53_RS09520 -1.0 -1.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK53_RS00925 -1.0 -2.5 Na+/H+ antiporter subunit E compare
LRK53_RS13510 -1.0 -5.1 polynucleotide adenylyltransferase PcnB compare
LRK53_RS11035 -1.0 -1.6 major capsid protein compare
LRK53_RS04190 -1.0 -2.9 dihydrolipoyl dehydrogenase compare
LRK53_RS09475 -1.0 -5.7 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK53_RS08825 -1.0 -1.7 recombination mediator RecR compare
LRK53_RS06110 -1.0 -1.5 NAD(P) transhydrogenase subunit alpha compare
LRK53_RS06945 -1.0 -2.6 beta-ketoacyl-[acyl-carrier-protein] synthase family protein compare
LRK53_RS07035 -1.0 -1.9 TolC family protein compare
LRK53_RS09240 -1.0 -1.2 DUF4386 domain-containing protein compare
LRK53_RS04950 -0.9 -1.5 carbohydrate kinase compare
LRK53_RS02580 -0.9 -3.4 c-type cytochrome compare
LRK53_RS12415 -0.9 -3.3 NAD-dependent protein deacetylase compare
LRK53_RS06930 -0.9 -1.0 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
LRK53_RS16035 -0.9 -1.4 hypothetical protein compare
LRK53_RS18170 -0.9 -2.6 HAMP domain-containing histidine kinase compare
LRK53_RS05615 -0.9 -1.9 WGR domain-containing protein compare
LRK53_RS06545 -0.9 -1.3 TIGR02099 family protein compare
LRK53_RS08125 -0.9 -8.3 TonB-dependent receptor compare
LRK53_RS13525 -0.9 -2.6 ferredoxin family protein compare
LRK53_RS09230 -0.9 -1.7 class II fumarate hydratase compare
LRK53_RS12275 -0.9 -1.7 Smr/MutS family protein compare
LRK53_RS15200 -0.9 -0.7 flagellar protein FlgN compare
LRK53_RS04750 -0.9 -2.3 L-serine ammonia-lyase compare
LRK53_RS08575 -0.9 -2.0 RNA-binding S4 domain-containing protein compare
LRK53_RS07280 -0.9 -1.2 YkgJ family cysteine cluster protein compare
LRK53_RS07980 -0.9 -1.2 GNAT family N-acetyltransferase compare
LRK53_RS15250 -0.9 -4.1 membrane assembly protein AsmA compare
LRK53_RS00215 -0.8 -2.3 TetR/AcrR family transcriptional regulator compare
LRK53_RS08470 -0.8 -1.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
LRK53_RS01745 -0.8 -4.0 TetR/AcrR family transcriptional regulator compare
LRK53_RS18370 -0.8 -2.0 DUF3150 domain-containing protein compare
LRK53_RS09125 -0.8 -2.3 Hsp20/alpha crystallin family protein compare
LRK53_RS09980 -0.8 -0.9 hypothetical protein compare
LRK53_RS05015 -0.8 -2.3 LacI family DNA-binding transcriptional regulator compare
LRK53_RS16710 -0.8 -7.6 penicillin-binding protein 1A compare
LRK53_RS15715 -0.8 -6.8 HPr(Ser) kinase/phosphatase compare
LRK53_RS07470 -0.8 -3.7 TRZ/ATZ family hydrolase compare
LRK53_RS05560 -0.8 -2.1 threonine/serine exporter family protein compare
LRK53_RS15875 -0.8 -1.2 hypothetical protein compare
LRK53_RS04315 -0.8 -5.6 pyridoxal-phosphate dependent enzyme compare
LRK53_RS00295 -0.8 -1.3 hypothetical protein compare
LRK53_RS05220 -0.8 -2.0 nucleoside deaminase compare
LRK53_RS11915 -0.8 -1.6 cold-shock protein compare
LRK53_RS03635 -0.8 -0.8 50S ribosomal protein L33 compare
LRK53_RS05395 -0.8 -2.1 transcriptional regulator NrdR compare
LRK53_RS08310 -0.8 -6.2 chorismate synthase compare
LRK53_RS09090 -0.8 -4.0 polyribonucleotide nucleotidyltransferase compare
LRK53_RS11025 -0.8 -1.5 hypothetical protein compare
LRK53_RS08250 -0.7 -1.3 HIT family protein compare
LRK53_RS05860 -0.7 -1.4 hypothetical protein compare
LRK53_RS16495 -0.7 -1.2 adenosylhomocysteinase compare
LRK53_RS14375 -0.7 -4.0 excinuclease ABC subunit UvrB compare
LRK53_RS05930 -0.7 -1.5 endonuclease domain-containing protein compare
LRK53_RS09315 -0.7 -1.4 pseudouridine synthase compare
LRK53_RS05580 -0.7 -2.3 phosphatidylcholine/phosphatidylserine synthase compare
LRK53_RS02545 -0.7 -1.3 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK53_RS03630 -0.7 -4.6 fatty acid desaturase compare
LRK53_RS13780 -0.7 -1.3 acetoacetyl-CoA reductase compare
LRK53_RS07665 -0.7 -1.6 glutathione S-transferase family protein compare
LRK53_RS09425 -0.7 -2.3 GlsB/YeaQ/YmgE family stress response membrane protein compare
LRK53_RS01340 -0.7 -4.7 DedA family protein compare
LRK53_RS04890 -0.7 -1.5 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
LRK53_RS08095 -0.7 -1.3 copper-binding protein compare
LRK53_RS10680 -0.7 -1.3 electron transfer flavoprotein subunit beta/FixA family protein compare
LRK53_RS04310 -0.7 -1.2 YdcH family protein compare
LRK53_RS05735 -0.7 -1.8 response regulator compare
LRK53_RS12115 -0.7 -3.4 SurA N-terminal domain-containing protein compare
LRK53_RS17340 -0.7 -1.3 arginase compare
LRK53_RS09460 -0.7 -1.7 methylisocitrate lyase compare
LRK53_RS09590 -0.7 -1.0 hypothetical protein compare
LRK53_RS13450 -0.7 -3.1 FKBP-type peptidyl-prolyl cis-trans isomerase compare
LRK53_RS16300 -0.7 -1.3 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
LRK53_RS15655 -0.7 -2.3 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK53_RS16675 -0.7 -1.3 DUF58 domain-containing protein compare
LRK53_RS00345 -0.7 -1.8 sorbitol dehydrogenase family protein compare
LRK53_RS00270 -0.7 -1.5 DUF883 family protein compare
LRK53_RS16305 -0.7 -4.4 penicillin-binding protein activator compare
LRK53_RS01095 -0.7 -2.4 lipid A biosynthesis acyltransferase compare
LRK53_RS01735 -0.7 -5.5 TolC family outer membrane protein compare
LRK53_RS16720 -0.7 -5.5 citrate synthase compare
LRK53_RS16900 -0.7 -1.8 ribose-5-phosphate isomerase RpiA compare
LRK53_RS04475 -0.7 -3.2 electron transfer flavoprotein-ubiquinone oxidoreductase compare
LRK53_RS17205 -0.6 -2.5 fumarylacetoacetate hydrolase family protein compare
LRK53_RS07030 -0.6 -2.8 ABC transporter permease compare
LRK53_RS06925 -0.6 -0.8 MtnX-like HAD-IB family phosphatase compare
LRK53_RS17075 -0.6 -3.3 efflux RND transporter periplasmic adaptor subunit compare
LRK53_RS10775 -0.6 -1.1 hypothetical protein compare
LRK53_RS06515 -0.6 -1.1 amidase family protein compare
LRK53_RS00945 -0.6 -1.1 helix-turn-helix domain-containing protein compare
LRK53_RS14035 -0.6 -1.7 formate-dependent phosphoribosylglycinamide formyltransferase compare
LRK53_RS09570 -0.6 -2.0 HD domain-containing protein compare
LRK53_RS13255 -0.6 -1.8 hypothetical protein compare
LRK53_RS07945 -0.6 -4.7 NAD-glutamate dehydrogenase compare
LRK53_RS07310 -0.6 -1.1 DEAD/DEAH box helicase compare
LRK53_RS11180 -0.6 -2.4 tetratricopeptide repeat protein compare
LRK53_RS11990 -0.6 -3.2 translation elongation factor 4 compare
LRK53_RS18095 -0.6 -3.1 Bax inhibitor-1/YccA family protein compare
LRK53_RS00930 -0.6 -1.5 K+/H+ antiporter subunit F compare
LRK53_RS09525 -0.6 -1.6 RNA chaperone Hfq compare
LRK53_RS03770 -0.6 -2.0 hypothetical protein compare
LRK53_RS13420 -0.6 -3.5 excinuclease ABC subunit UvrA compare
LRK53_RS04850 -0.6 -1.7 transposase compare
LRK53_RS11610 -0.6 -1.5 low molecular weight phosphotyrosine protein phosphatase compare
LRK53_RS01125 -0.6 -5.4 sulfatase-like hydrolase/transferase compare
LRK53_RS03475 -0.6 -2.8 aspartate/tyrosine/aromatic aminotransferase compare
LRK53_RS11190 -0.6 -1.2 type IV pilus biogenesis/stability protein PilW compare
LRK53_RS04265 -0.6 -2.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK53_RS09020 -0.6 -1.8 hypothetical protein compare
LRK53_RS09540 -0.6 -3.3 protease modulator HflC compare
LRK53_RS08485 -0.6 -1.6 imidazole glycerol phosphate synthase subunit HisF compare
LRK53_RS18720 -0.6 -2.4 RES domain-containing protein compare
LRK53_RS13380 -0.6 -1.0 hypothetical protein compare
LRK53_RS04505 -0.6 -1.1 met regulon transcriptional regulator MetJ compare
LRK53_RS11280 -0.6 -1.6 MBL fold metallo-hydrolase compare
LRK53_RS09780 -0.6 -0.6 tRNA-Gly compare
LRK53_RS12135 -0.6 -4.7 endopeptidase La compare
LRK53_RS03095 -0.6 -1.1 dihydroxy-acid dehydratase compare
LRK53_RS15545 -0.6 -1.9 hypothetical protein compare
LRK53_RS09730 -0.6 -1.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
LRK53_RS06910 -0.6 -2.4 GNAT family N-acetyltransferase compare
LRK53_RS05200 -0.6 -1.2 type IV pilus modification protein PilV compare
LRK53_RS14405 -0.6 -1.5 hypothetical protein compare
LRK53_RS13895 -0.6 -0.6 histone H1-like repetitive region-containing protein compare
LRK53_RS15725 -0.6 -4.7 PTS fructose transporter subunit IIA compare
LRK53_RS06860 -0.6 -0.9 nucleotidyltransferase family protein compare
LRK53_RS08350 -0.6 -1.0 tryptophan synthase subunit beta compare
LRK53_RS11660 -0.6 -1.5 transcriptional regulator compare
LRK53_RS10450 -0.6 -1.6 FUSC family protein compare
LRK53_RS00155 -0.6 -1.4 GFA family protein compare
LRK53_RS13060 -0.6 -0.9 DksA/TraR family C4-type zinc finger protein compare
LRK53_RS10245 -0.6 -1.7 FAD-binding oxidoreductase compare
LRK53_RS13955 -0.6 -2.7 LysR substrate-binding domain-containing protein compare
LRK53_RS12580 -0.6 -1.2 biopolymer transporter ExbD compare
LRK53_RS03010 -0.5 -0.7 hypothetical protein compare
LRK53_RS17785 -0.5 -1.4 septal ring lytic transglycosylase RlpA family protein compare
LRK53_RS11050 -0.5 -1.0 hypothetical protein compare
LRK53_RS03165 -0.5 -1.0 homoserine dehydrogenase compare
LRK53_RS07425 -0.5 -1.2 cytochrome c biogenesis protein CcsA compare
LRK53_RS10985 -0.5 -1.5 phosphatase PAP2 family protein compare
LRK53_RS16890 -0.5 -1.9 5-formyltetrahydrofolate cyclo-ligase compare
LRK53_RS15135 -0.5 -1.3 flagellar assembly peptidoglycan hydrolase FlgJ compare
LRK53_RS14335 -0.5 -2.0 twin-arginine translocase TatA/TatE family subunit compare


Specific Phenotypes

None in this experiment

For Rhodanobacter sp000427505 FW510-R12 in no stress control experiments