Experiment set3S231 for Rhodanobacter sp000427505 FW510-R12

Compare to:

R2A_PIPES no stress control

200 most important genes:

  gene name fitness t score description  
LRK53_RS11185 -2.9 -1.5 DUF4115 domain-containing protein compare
LRK53_RS07025 -2.7 -1.8 ABC transporter ATP-binding protein compare
LRK53_RS05555 -2.6 -1.7 NfeD family protein compare
LRK53_RS06820 -2.5 -3.4 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
LRK53_RS05125 -2.4 -13.8 potassium transporter Kup compare
LRK53_RS14520 -2.3 -1.6 GNAT family N-acetyltransferase compare
LRK53_RS04190 -2.2 -3.7 dihydrolipoyl dehydrogenase compare
LRK53_RS03715 -2.0 -1.3 cell division ATP-binding protein FtsE compare
LRK53_RS04185 -2.0 -3.9 dihydrolipoyllysine-residue acetyltransferase compare
LRK53_RS03745 -1.9 -7.0 peptidoglycan DD-metalloendopeptidase family protein compare
LRK53_RS11155 -1.9 -3.8 glutamine-hydrolyzing GMP synthase compare
LRK53_RS05680 -1.8 -1.8 pyrroline-5-carboxylate reductase compare
LRK53_RS16860 -1.8 -1.2 cytochrome bd-I oxidase subunit CydX compare
LRK53_RS16290 -1.8 -2.6 division/cell wall cluster transcriptional repressor MraZ compare
LRK53_RS05220 -1.7 -3.4 nucleoside deaminase compare
LRK53_RS14790 -1.7 -1.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
LRK53_RS17895 -1.6 -1.2 phosphomannomutase/phosphoglucomutase compare
LRK53_RS06500 -1.6 -1.1 disulfide bond formation protein B compare
LRK53_RS17570 -1.6 -1.8 alpha/beta hydrolase compare
LRK53_RS09170 -1.6 -1.1 cupin domain-containing protein compare
LRK53_RS04890 -1.5 -2.5 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
LRK53_RS16520 -1.5 -3.0 HAMP domain-containing histidine kinase compare
LRK53_RS18770 -1.5 -2.1 hypothetical protein compare
LRK53_RS04075 -1.5 -10.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK53_RS04370 -1.5 -6.0 cystathionine gamma-synthase compare
LRK53_RS03695 -1.4 -8.6 glutamate--cysteine ligase compare
LRK53_RS07695 -1.4 -2.9 enoyl-CoA hydratase-related protein compare
LRK53_RS07450 -1.3 -0.9 50S ribosomal protein L19 compare
LRK53_RS13510 -1.3 -6.3 polynucleotide adenylyltransferase PcnB compare
LRK53_RS13965 -1.3 -2.6 NAD(P)H-dependent oxidoreductase compare
LRK53_RS11005 -1.3 -2.0 Tn3 family resolvase compare
LRK53_RS03720 -1.3 -2.1 permease-like cell division protein FtsX compare
LRK53_RS11455 -1.3 -2.3 NfuA family Fe-S biogenesis protein compare
LRK53_RS04640 -1.3 -1.6 helix-turn-helix domain-containing protein compare
LRK53_RS11330 -1.2 -1.2 (d)CMP kinase compare
LRK53_RS12250 -1.2 -6.2 Mth938-like domain-containing protein compare
LRK53_RS19155 -1.2 -1.9 hypothetical protein compare
LRK53_RS01585 -1.2 -1.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LRK53_RS00945 -1.2 -1.7 helix-turn-helix domain-containing protein compare
LRK53_RS13525 -1.2 -3.5 ferredoxin family protein compare
LRK53_RS05560 -1.2 -2.9 threonine/serine exporter family protein compare
LRK53_RS11780 -1.2 -0.8 cytochrome-c oxidase, cbb3-type subunit I compare
LRK53_RS07870 -1.2 -2.1 hypothetical protein compare
LRK53_RS11790 -1.2 -1.3 cbb3-type cytochrome c oxidase subunit 3 compare
LRK53_RS16510 -1.2 -1.0 DUF4124 domain-containing protein compare
LRK53_RS09520 -1.1 -1.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK53_RS02580 -1.1 -3.9 c-type cytochrome compare
LRK53_RS09475 -1.1 -6.6 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK53_RS05865 -1.1 -2.9 response regulator transcription factor compare
LRK53_RS09830 -1.1 -1.6 phosphoglycerate mutase compare
LRK53_RS00105 -1.1 -1.0 hypothetical protein compare
LRK53_RS04315 -1.1 -7.5 pyridoxal-phosphate dependent enzyme compare
LRK53_RS05265 -1.1 -1.4 hypothetical protein compare
LRK53_RS05565 -1.1 -0.7 H-NS histone family protein compare
LRK53_RS14725 -1.1 -1.5 DUF2249 domain-containing protein compare
LRK53_RS01745 -1.1 -5.0 TetR/AcrR family transcriptional regulator compare
LRK53_RS07035 -1.1 -2.0 TolC family protein compare
LRK53_RS00155 -1.0 -2.4 GFA family protein compare
LRK53_RS00865 -1.0 -0.7 alpha/beta hydrolase compare
LRK53_RS04950 -1.0 -1.6 carbohydrate kinase compare
LRK53_RS12280 -1.0 -2.4 tRNA pseudouridine(13) synthase TruD compare
LRK53_RS13060 -1.0 -1.4 DksA/TraR family C4-type zinc finger protein compare
LRK53_RS06545 -1.0 -1.2 TIGR02099 family protein compare
LRK53_RS05725 -1.0 -6.0 glutathione synthase compare
LRK53_RS06930 -1.0 -1.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
LRK53_RS02285 -1.0 -1.3 oxygen-dependent coproporphyrinogen oxidase compare
LRK53_RS07030 -1.0 -3.7 ABC transporter permease compare
LRK53_RS05355 -1.0 -2.4 hypothetical protein compare
LRK53_RS14770 -1.0 -1.5 SDR family NAD(P)-dependent oxidoreductase compare
LRK53_RS18025 -1.0 -1.2 hypothetical protein compare
LRK53_RS08670 -0.9 -2.0 heavy metal-responsive transcriptional regulator compare
LRK53_RS08980 -0.9 -2.6 NADH-quinone oxidoreductase subunit J compare
LRK53_RS09955 -0.9 -0.8 thioredoxin family protein compare
LRK53_RS09655 -0.9 -4.7 ribonuclease R compare
LRK53_RS15705 -0.9 -4.7 RNA polymerase factor sigma-54 compare
LRK53_RS15715 -0.9 -8.0 HPr(Ser) kinase/phosphatase compare
LRK53_RS13185 -0.9 -3.4 NAD(P)H-dependent oxidoreductase compare
LRK53_RS02850 -0.9 -0.6 response regulator compare
LRK53_RS14215 -0.9 -2.1 hypothetical protein compare
LRK53_RS08125 -0.9 -8.3 TonB-dependent receptor compare
LRK53_RS09590 -0.9 -1.1 hypothetical protein compare
LRK53_RS12150 -0.9 -3.4 trigger factor compare
LRK53_RS09090 -0.9 -4.8 polyribonucleotide nucleotidyltransferase compare
LRK53_RS03160 -0.9 -1.7 homoserine kinase compare
LRK53_RS02380 -0.9 -1.4 hypothetical protein compare
LRK53_RS06945 -0.9 -2.7 beta-ketoacyl-[acyl-carrier-protein] synthase family protein compare
LRK53_RS07420 -0.9 -1.7 DNA repair protein RadA compare
LRK53_RS17340 -0.9 -1.5 arginase compare
LRK53_RS01095 -0.9 -3.0 lipid A biosynthesis acyltransferase compare
LRK53_RS04505 -0.8 -1.4 met regulon transcriptional regulator MetJ compare
LRK53_RS07470 -0.8 -3.9 TRZ/ATZ family hydrolase compare
LRK53_RS03545 -0.8 -1.3 DUF2249 domain-containing protein compare
LRK53_RS05465 -0.8 -1.7 hemin uptake protein HemP compare
LRK53_RS09525 -0.8 -1.7 RNA chaperone Hfq compare
LRK53_RS16710 -0.8 -7.7 penicillin-binding protein 1A compare
LRK53_RS16900 -0.8 -2.2 ribose-5-phosphate isomerase RpiA compare
LRK53_RS05930 -0.8 -1.6 endonuclease domain-containing protein compare
LRK53_RS09315 -0.8 -1.5 pseudouridine synthase compare
LRK53_RS08665 -0.8 -1.7 hypothetical protein compare
LRK53_RS08820 -0.8 -1.5 YbaB/EbfC family nucleoid-associated protein compare
LRK53_RS13450 -0.8 -3.6 FKBP-type peptidyl-prolyl cis-trans isomerase compare
LRK53_RS11280 -0.8 -1.9 MBL fold metallo-hydrolase compare
LRK53_RS03635 -0.8 -0.9 50S ribosomal protein L33 compare
LRK53_RS02405 -0.8 -1.5 YecA family protein compare
LRK53_RS18120 -0.8 -1.4 energy transducer TonB compare
LRK53_RS12880 -0.8 -0.8 hypothetical protein compare
LRK53_RS06835 -0.8 -2.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
LRK53_RS16720 -0.8 -6.2 citrate synthase compare
LRK53_RS05505 -0.7 -2.0 ABC transporter ATP-binding protein compare
LRK53_RS04475 -0.7 -3.7 electron transfer flavoprotein-ubiquinone oxidoreductase compare
LRK53_RS08310 -0.7 -6.1 chorismate synthase compare
LRK53_RS16345 -0.7 -0.8 hypothetical protein compare
LRK53_RS12830 -0.7 -1.0 YkgJ family cysteine cluster protein compare
LRK53_RS05110 -0.7 -2.1 YebC/PmpR family DNA-binding transcriptional regulator compare
LRK53_RS05760 -0.7 -0.6 chemotaxis protein CheW compare
LRK53_RS02150 -0.7 -1.2 6-carboxytetrahydropterin synthase QueD compare
LRK53_RS07425 -0.7 -1.5 cytochrome c biogenesis protein CcsA compare
LRK53_RS09730 -0.7 -1.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
LRK53_RS13565 -0.7 -1.0 isocitrate dehydrogenase compare
LRK53_RS06715 -0.7 -1.3 [protein-PII] uridylyltransferase compare
LRK53_RS08795 -0.7 -1.2 MBL fold metallo-hydrolase compare
LRK53_RS00015 -0.7 -3.5 DNA replication/repair protein RecF compare
LRK53_RS11075 -0.7 -2.1 thymidine phosphorylase family protein compare
LRK53_RS17860 -0.7 -1.1 peptidoglycan DD-metalloendopeptidase family protein compare
LRK53_RS01530 -0.7 -0.6 YiiD C-terminal domain-containing protein compare
LRK53_RS03410 -0.7 -1.5 SCP2 sterol-binding domain-containing protein compare
LRK53_RS09460 -0.7 -1.8 methylisocitrate lyase compare
LRK53_RS18780 -0.7 -2.6 hypothetical protein compare
LRK53_RS00405 -0.7 -1.2 trimeric intracellular cation channel family protein compare
LRK53_RS14350 -0.7 -2.0 Spx/MgsR family RNA polymerase-binding regulatory protein compare
LRK53_RS03630 -0.7 -4.6 fatty acid desaturase compare
LRK53_RS01120 -0.7 -1.3 VanZ family protein compare
LRK53_RS18265 -0.7 -2.1 hypothetical protein compare
LRK53_RS16035 -0.7 -1.1 hypothetical protein compare
LRK53_RS14810 -0.7 -1.2 DUF3301 domain-containing protein compare
LRK53_RS07490 -0.7 -2.2 phytoene synthase compare
LRK53_RS17450 -0.7 -1.7 FAD/NAD(P)-binding protein compare
LRK53_RS00295 -0.7 -1.4 hypothetical protein compare
LRK53_RS07945 -0.7 -5.2 NAD-glutamate dehydrogenase compare
LRK53_RS15655 -0.7 -2.4 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK53_RS07410 -0.7 -1.3 50S ribosomal protein L9 compare
LRK53_RS16300 -0.7 -1.3 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
LRK53_RS07040 -0.7 -2.3 sensor histidine kinase compare
LRK53_RS07280 -0.7 -1.2 YkgJ family cysteine cluster protein compare
LRK53_RS13420 -0.7 -3.9 excinuclease ABC subunit UvrA compare
LRK53_RS14525 -0.7 -2.1 universal stress protein compare
LRK53_RS05370 -0.7 -1.3 hypothetical protein compare
LRK53_RS17205 -0.7 -2.5 fumarylacetoacetate hydrolase family protein compare
LRK53_RS00910 -0.7 -3.2 monovalent cation/H+ antiporter subunit A compare
LRK53_RS01570 -0.7 -1.1 DNA polymerase I compare
LRK53_RS01340 -0.7 -4.5 DedA family protein compare
LRK53_RS11990 -0.6 -3.4 translation elongation factor 4 compare
LRK53_RS10040 -0.6 -1.1 DUF2282 domain-containing protein compare
LRK53_RS13705 -0.6 -1.4 response regulator compare
LRK53_RS05395 -0.6 -1.8 transcriptional regulator NrdR compare
LRK53_RS15865 -0.6 -1.5 hypothetical protein compare
LRK53_RS06870 -0.6 -0.7 SUF system Fe-S cluster assembly regulator compare
LRK53_RS16305 -0.6 -4.2 penicillin-binding protein activator compare
LRK53_RS01125 -0.6 -5.6 sulfatase-like hydrolase/transferase compare
LRK53_RS07020 -0.6 -0.9 HlyD family efflux transporter periplasmic adaptor subunit compare
LRK53_RS11965 -0.6 -2.0 DNA repair protein RecO compare
LRK53_RS09770 -0.6 -3.3 excinuclease ABC subunit UvrC compare
LRK53_RS00440 -0.6 -1.6 hypothetical protein compare
LRK53_RS08825 -0.6 -1.3 recombination mediator RecR compare
LRK53_RS02290 -0.6 -1.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
LRK53_RS15085 -0.6 -1.5 flagellar hook-basal body complex protein FliE compare
LRK53_RS16635 -0.6 -1.2 efflux RND transporter periplasmic adaptor subunit compare
LRK53_RS17760 -0.6 -3.1 carboxy terminal-processing peptidase compare
LRK53_RS13625 -0.6 -0.7 carbon storage regulator CsrA compare
LRK53_RS18860 -0.6 -1.2 hypothetical protein compare
LRK53_RS13040 -0.6 -1.9 hypothetical protein compare
LRK53_RS17185 -0.6 -1.1 copper-containing nitrite reductase compare
LRK53_RS05135 -0.6 -2.5 tol-pal system-associated acyl-CoA thioesterase compare
LRK53_RS09760 -0.6 -2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
LRK53_RS17105 -0.6 -3.3 ribulose-phosphate 3-epimerase compare
LRK53_RS02535 -0.6 -3.1 DUF481 domain-containing protein compare
LRK53_RS11915 -0.6 -1.4 cold-shock protein compare
LRK53_RS15955 -0.6 -1.4 PhzF family phenazine biosynthesis protein compare
LRK53_RS08005 -0.6 -3.6 transcription-repair coupling factor compare
LRK53_RS00930 -0.6 -1.6 K+/H+ antiporter subunit F compare
LRK53_RS05615 -0.6 -1.3 WGR domain-containing protein compare
LRK53_RS06850 -0.6 -0.6 protein translocase subunit SecD compare
LRK53_RS18080 -0.6 -2.0 glucose-6-phosphate isomerase compare
LRK53_RS04265 -0.6 -2.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK53_RS09085 -0.6 -0.9 30S ribosomal protein S15 compare
LRK53_RS12700 -0.6 -1.4 DUF3293 domain-containing protein compare
LRK53_RS15650 -0.6 -2.7 DUF2066 domain-containing protein compare
LRK53_RS13775 -0.6 -1.7 tRNA glutamyl-Q(34) synthetase GluQRS compare
LRK53_RS04795 -0.6 -1.6 IS5 family transposase compare
LRK53_RS01630 -0.6 -1.5 protein-disulfide reductase DsbD compare
LRK53_RS05175 -0.6 -0.8 7-cyano-7-deazaguanine synthase QueC compare
LRK53_RS11805 -0.5 -0.4 heavy metal translocating P-type ATPase compare
LRK53_RS12585 -0.5 -1.7 MotA/TolQ/ExbB proton channel family protein compare
LRK53_RS17220 -0.5 -1.4 MarR family winged helix-turn-helix transcriptional regulator compare
LRK53_RS03155 -0.5 -2.0 threonine synthase compare
LRK53_RS14415 -0.5 -2.4 ATP-binding cassette domain-containing protein compare
LRK53_RS05295 -0.5 -5.0 phosphoribosylformylglycinamidine synthase compare
LRK53_RS01695 -0.5 -1.9 zinc-finger domain-containing protein compare
LRK53_RS08100 -0.5 -0.9 MBL fold metallo-hydrolase compare
LRK53_RS03875 -0.5 -1.1 DUF4194 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Rhodanobacter sp000427505 FW510-R12 in no stress control experiments