Experiment set3S230 for Rhodanobacter sp000427505 FW510-R12

Compare to:

R2A_PIPES no stress control

200 most important genes:

  gene name fitness t score description  
LRK53_RS06715 -2.7 -2.6 [protein-PII] uridylyltransferase compare
LRK53_RS06820 -2.6 -3.5 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
LRK53_RS05125 -2.4 -15.0 potassium transporter Kup compare
LRK53_RS11155 -2.3 -3.9 glutamine-hydrolyzing GMP synthase compare
LRK53_RS03745 -2.2 -8.7 peptidoglycan DD-metalloendopeptidase family protein compare
LRK53_RS09265 -2.1 -1.4 GntR family transcriptional regulator compare
LRK53_RS01570 -2.0 -2.3 DNA polymerase I compare
LRK53_RS06850 -2.0 -1.5 protein translocase subunit SecD compare
LRK53_RS04390 -1.9 -1.8 glycosyltransferase family 2 protein compare
LRK53_RS00915 -1.8 -1.6 Na+/H+ antiporter subunit C compare
LRK53_RS16900 -1.7 -3.7 ribose-5-phosphate isomerase RpiA compare
LRK53_RS05760 -1.6 -1.2 chemotaxis protein CheW compare
LRK53_RS17900 -1.6 -1.9 dUTP diphosphatase compare
LRK53_RS04370 -1.6 -6.7 cystathionine gamma-synthase compare
LRK53_RS04075 -1.6 -11.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK53_RS04185 -1.6 -4.3 dihydrolipoyllysine-residue acetyltransferase compare
LRK53_RS05865 -1.6 -4.0 response regulator transcription factor compare
LRK53_RS11790 -1.6 -1.8 cbb3-type cytochrome c oxidase subunit 3 compare
LRK53_RS08205 -1.6 -1.5 RnfABCDGE type electron transport complex subunit B compare
LRK53_RS04190 -1.5 -3.9 dihydrolipoyl dehydrogenase compare
LRK53_RS14770 -1.5 -2.2 SDR family NAD(P)-dependent oxidoreductase compare
LRK53_RS11185 -1.5 -1.1 DUF4115 domain-containing protein compare
LRK53_RS01235 -1.4 -2.0 monovalent cation:proton antiporter-2 (CPA2) family protein compare
LRK53_RS16300 -1.4 -2.4 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
LRK53_RS12580 -1.4 -2.6 biopolymer transporter ExbD compare
LRK53_RS03695 -1.4 -8.4 glutamate--cysteine ligase compare
LRK53_RS03715 -1.4 -1.2 cell division ATP-binding protein FtsE compare
LRK53_RS11330 -1.3 -1.3 (d)CMP kinase compare
LRK53_RS14520 -1.3 -1.2 GNAT family N-acetyltransferase compare
LRK53_RS01585 -1.3 -1.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LRK53_RS09710 -1.3 -3.4 high frequency lysogenization protein HflD compare
LRK53_RS13895 -1.3 -1.2 histone H1-like repetitive region-containing protein compare
LRK53_RS12585 -1.3 -3.1 MotA/TolQ/ExbB proton channel family protein compare
LRK53_RS13260 -1.3 -2.1 NAD(P)-dependent alcohol dehydrogenase compare
LRK53_RS13625 -1.3 -0.9 carbon storage regulator CsrA compare
LRK53_RS16520 -1.3 -3.3 HAMP domain-containing histidine kinase compare
LRK53_RS09830 -1.2 -1.6 phosphoglycerate mutase compare
LRK53_RS09475 -1.2 -7.2 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK53_RS03720 -1.2 -2.4 permease-like cell division protein FtsX compare
LRK53_RS12250 -1.2 -6.3 Mth938-like domain-containing protein compare
LRK53_RS16995 -1.2 -1.5 aminodeoxychorismate/anthranilate synthase component II compare
LRK53_RS09435 -1.2 -0.7 malate dehydrogenase compare
LRK53_RS13525 -1.2 -3.6 ferredoxin family protein compare
LRK53_RS16720 -1.2 -9.5 citrate synthase compare
LRK53_RS06175 -1.1 -1.8 acylphosphatase compare
LRK53_RS16290 -1.1 -2.3 division/cell wall cluster transcriptional repressor MraZ compare
LRK53_RS11805 -1.1 -0.8 heavy metal translocating P-type ATPase compare
LRK53_RS05725 -1.1 -6.8 glutathione synthase compare
LRK53_RS03630 -1.1 -6.9 fatty acid desaturase compare
LRK53_RS02285 -1.1 -1.4 oxygen-dependent coproporphyrinogen oxidase compare
LRK53_RS14100 -1.1 -2.2 response regulator transcription factor compare
LRK53_RS13510 -1.1 -5.6 polynucleotide adenylyltransferase PcnB compare
LRK53_RS05680 -1.1 -1.6 pyrroline-5-carboxylate reductase compare
LRK53_RS03545 -1.1 -1.6 DUF2249 domain-containing protein compare
LRK53_RS00215 -1.1 -3.2 TetR/AcrR family transcriptional regulator compare
LRK53_RS15705 -1.0 -5.6 RNA polymerase factor sigma-54 compare
LRK53_RS04795 -1.0 -2.4 IS5 family transposase compare
LRK53_RS00405 -1.0 -1.6 trimeric intracellular cation channel family protein compare
LRK53_RS02335 -1.0 -1.3 hypothetical protein compare
LRK53_RS11300 -1.0 -2.0 polysaccharide biosynthesis protein compare
LRK53_RS06515 -1.0 -1.7 amidase family protein compare
LRK53_RS04640 -1.0 -1.4 helix-turn-helix domain-containing protein compare
LRK53_RS15650 -1.0 -4.5 DUF2066 domain-containing protein compare
LRK53_RS16600 -1.0 -1.1 fumarylacetoacetate hydrolase family protein compare
LRK53_RS07695 -1.0 -2.4 enoyl-CoA hydratase-related protein compare
LRK53_RS04315 -1.0 -7.0 pyridoxal-phosphate dependent enzyme compare
LRK53_RS16305 -1.0 -6.5 penicillin-binding protein activator compare
LRK53_RS14670 -0.9 -1.4 purine-nucleoside phosphorylase compare
LRK53_RS04580 -0.9 -1.4 sigma-70 family RNA polymerase sigma factor compare
LRK53_RS11400 -0.9 -2.6 DNA repair protein RecN compare
LRK53_RS14010 -0.9 -1.7 N-acetylmuramoyl-L-alanine amidase compare
LRK53_RS09230 -0.9 -1.8 class II fumarate hydratase compare
LRK53_RS11285 -0.9 -1.2 tRNA-binding protein compare
LRK53_RS01530 -0.9 -0.8 YiiD C-terminal domain-containing protein compare
LRK53_RS18025 -0.9 -1.3 hypothetical protein compare
LRK53_RS12485 -0.9 -1.4 hypothetical protein compare
LRK53_RS09590 -0.9 -1.3 hypothetical protein compare
LRK53_RS02580 -0.9 -3.6 c-type cytochrome compare
LRK53_RS08455 -0.9 -1.6 ATP phosphoribosyltransferase compare
LRK53_RS08730 -0.9 -1.7 hypothetical protein compare
LRK53_RS09655 -0.9 -4.8 ribonuclease R compare
LRK53_RS07490 -0.9 -2.8 phytoene synthase compare
LRK53_RS16495 -0.9 -1.4 adenosylhomocysteinase compare
LRK53_RS10200 -0.9 -1.1 TraR/DksA C4-type zinc finger protein compare
LRK53_RS14785 -0.9 -2.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
LRK53_RS08125 -0.9 -8.0 TonB-dependent receptor compare
LRK53_RS05220 -0.8 -2.3 nucleoside deaminase compare
LRK53_RS18855 -0.8 -2.4 hypothetical protein compare
LRK53_RS12135 -0.8 -6.9 endopeptidase La compare
LRK53_RS09170 -0.8 -1.2 cupin domain-containing protein compare
LRK53_RS02300 -0.8 -2.0 hypothetical protein compare
LRK53_RS18445 -0.8 -1.3 hypothetical protein compare
LRK53_RS00155 -0.8 -2.2 GFA family protein compare
LRK53_RS15715 -0.8 -7.0 HPr(Ser) kinase/phosphatase compare
LRK53_RS16710 -0.8 -7.6 penicillin-binding protein 1A compare
LRK53_RS00910 -0.8 -3.9 monovalent cation/H+ antiporter subunit A compare
LRK53_RS07300 -0.8 -1.7 DEAD/DEAH box helicase compare
LRK53_RS09520 -0.8 -1.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK53_RS08820 -0.8 -1.1 YbaB/EbfC family nucleoid-associated protein compare
LRK53_RS07420 -0.8 -1.6 DNA repair protein RadA compare
LRK53_RS11990 -0.8 -4.1 translation elongation factor 4 compare
LRK53_RS13965 -0.8 -1.9 NAD(P)H-dependent oxidoreductase compare
LRK53_RS11040 -0.8 -1.8 hypothetical protein compare
LRK53_RS07020 -0.8 -1.3 HlyD family efflux transporter periplasmic adaptor subunit compare
LRK53_RS07280 -0.8 -1.3 YkgJ family cysteine cluster protein compare
LRK53_RS10270 -0.8 -1.1 alpha/beta fold hydrolase compare
LRK53_RS03330 -0.8 -0.8 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
LRK53_RS01745 -0.8 -3.9 TetR/AcrR family transcriptional regulator compare
LRK53_RS05615 -0.8 -1.7 WGR domain-containing protein compare
LRK53_RS14725 -0.8 -1.3 DUF2249 domain-containing protein compare
LRK53_RS05265 -0.8 -1.2 hypothetical protein compare
LRK53_RS12740 -0.8 -1.4 cytochrome c-type biogenesis protein CcmH compare
LRK53_RS14800 -0.8 -3.5 DUF1631 domain-containing protein compare
LRK53_RS06865 -0.7 -3.5 phosphotransferase compare
LRK53_RS14350 -0.7 -2.4 Spx/MgsR family RNA polymerase-binding regulatory protein compare
LRK53_RS15755 -0.7 -1.3 SDR family oxidoreductase compare
LRK53_RS00775 -0.7 -4.2 metalloregulator ArsR/SmtB family transcription factor compare
LRK53_RS03410 -0.7 -1.6 SCP2 sterol-binding domain-containing protein compare
LRK53_RS17205 -0.7 -3.0 fumarylacetoacetate hydrolase family protein compare
LRK53_RS04200 -0.7 -1.1 hypothetical protein compare
LRK53_RS07035 -0.7 -1.7 TolC family protein compare
LRK53_RS00380 -0.7 -0.6 DUF308 domain-containing protein compare
LRK53_RS11470 -0.7 -1.9 Rne/Rng family ribonuclease compare
LRK53_RS00690 -0.7 -1.2 N-acetylglucosamine-6-phosphate deacetylase compare
LRK53_RS11180 -0.7 -2.9 tetratricopeptide repeat protein compare
LRK53_RS02150 -0.7 -1.3 6-carboxytetrahydropterin synthase QueD compare
LRK53_RS13450 -0.7 -3.4 FKBP-type peptidyl-prolyl cis-trans isomerase compare
LRK53_RS01695 -0.7 -2.4 zinc-finger domain-containing protein compare
LRK53_RS07925 -0.7 -2.5 metalloregulator ArsR/SmtB family transcription factor compare
LRK53_RS09725 -0.7 -3.0 ATP-dependent Clp protease adapter ClpS compare
LRK53_RS16895 -0.7 -4.3 EVE domain-containing protein compare
LRK53_RS17350 -0.6 -1.8 hypothetical protein compare
LRK53_RS07470 -0.6 -3.5 TRZ/ATZ family hydrolase compare
LRK53_RS05395 -0.6 -2.0 transcriptional regulator NrdR compare
LRK53_RS16675 -0.6 -1.4 DUF58 domain-containing protein compare
LRK53_RS03065 -0.6 -0.7 4-hydroxybenzoate octaprenyltransferase compare
LRK53_RS08910 -0.6 -1.6 endolytic transglycosylase MltG compare
LRK53_RS07425 -0.6 -1.4 cytochrome c biogenesis protein CcsA compare
LRK53_RS17725 -0.6 -2.4 substrate-binding domain-containing protein compare
LRK53_RS06035 -0.6 -0.7 helix-turn-helix domain-containing protein compare
LRK53_RS05995 -0.6 -4.4 oligosaccharide flippase family protein compare
LRK53_RS04500 -0.6 -2.9 glycine cleavage system protein GcvH compare
LRK53_RS02530 -0.6 -1.7 hypothetical protein compare
LRK53_RS03875 -0.6 -1.3 DUF4194 domain-containing protein compare
LRK53_RS19150 -0.6 -2.6 hypothetical protein compare
LRK53_RS05980 -0.6 -4.0 glycosyltransferase family 4 protein compare
LRK53_RS10480 -0.6 -1.7 universal stress protein compare
LRK53_RS06075 -0.6 -3.2 exodeoxyribonuclease IX compare
LRK53_RS11280 -0.6 -1.8 MBL fold metallo-hydrolase compare
LRK53_RS11610 -0.6 -1.6 low molecular weight phosphotyrosine protein phosphatase compare
LRK53_RS07485 -0.6 -2.5 phosphoglycolate phosphatase compare
LRK53_RS13045 -0.6 -2.6 hypothetical protein compare
LRK53_RS10295 -0.6 -2.1 YCF48-related protein compare
LRK53_RS03105 -0.6 -3.5 3-isopropylmalate dehydratase small subunit compare
LRK53_RS05015 -0.6 -1.9 LacI family DNA-binding transcriptional regulator compare
LRK53_RS18285 -0.6 -1.9 hypothetical protein compare
LRK53_RS19015 -0.6 -1.5 hypothetical protein compare
LRK53_RS00920 -0.6 -2.6 monovalent cation/H+ antiporter subunit D compare
LRK53_RS12150 -0.6 -2.5 trigger factor compare
LRK53_RS15900 -0.6 -3.8 autotransporter assembly complex protein TamA compare
LRK53_RS09090 -0.6 -3.5 polyribonucleotide nucleotidyltransferase compare
LRK53_RS01095 -0.6 -2.2 lipid A biosynthesis acyltransferase compare
LRK53_RS16160 -0.6 -1.4 hypothetical protein compare
LRK53_RS05135 -0.6 -2.5 tol-pal system-associated acyl-CoA thioesterase compare
LRK53_RS11310 -0.6 -3.4 lipopolysaccharide assembly protein LapB compare
LRK53_RS07500 -0.6 -0.7 membrane protein insertion efficiency factor YidD compare
LRK53_RS11480 -0.6 -1.7 hypothetical protein compare
LRK53_RS07455 -0.6 -2.1 GGDEF domain-containing phosphodiesterase compare
LRK53_RS11780 -0.6 -0.7 cytochrome-c oxidase, cbb3-type subunit I compare
LRK53_RS02290 -0.6 -1.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
LRK53_RS12000 -0.6 -1.9 sigma-E factor negative regulatory protein compare
LRK53_RS11490 -0.6 -1.7 preprotein translocase subunit SecG compare
LRK53_RS18170 -0.6 -1.9 HAMP domain-containing histidine kinase compare
LRK53_RS05555 -0.6 -0.5 NfeD family protein compare
LRK53_RS01540 -0.6 -2.0 uroporphyrinogen-III C-methyltransferase compare
LRK53_RS02085 -0.6 -2.8 hypothetical protein compare
LRK53_RS02885 -0.5 -1.8 glycosyltransferase family 2 protein compare
LRK53_RS13025 -0.5 -1.4 DMT family transporter compare
LRK53_RS12245 -0.5 -0.9 ribosome assembly RNA-binding protein YhbY compare
LRK53_RS03635 -0.5 -0.7 50S ribosomal protein L33 compare
LRK53_RS09535 -0.5 -3.5 FtsH protease activity modulator HflK compare
LRK53_RS01505 -0.5 -1.2 hotdog fold thioesterase compare
LRK53_RS04475 -0.5 -2.9 electron transfer flavoprotein-ubiquinone oxidoreductase compare
LRK53_RS05070 -0.5 -1.6 helix-turn-helix transcriptional regulator compare
LRK53_RS09540 -0.5 -3.1 protease modulator HflC compare
LRK53_RS05505 -0.5 -1.5 ABC transporter ATP-binding protein compare
LRK53_RS13185 -0.5 -2.4 NAD(P)H-dependent oxidoreductase compare
LRK53_RS01340 -0.5 -3.8 DedA family protein compare
LRK53_RS05200 -0.5 -1.2 type IV pilus modification protein PilV compare
LRK53_RS10035 -0.5 -0.5 hypothetical protein compare
LRK53_RS12265 -0.5 -1.2 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
LRK53_RS08310 -0.5 -4.4 chorismate synthase compare
LRK53_RS09875 -0.5 -1.9 BolA family transcriptional regulator compare
LRK53_RS14455 -0.5 -1.0 ATP-binding protein compare
LRK53_RS05860 -0.5 -1.1 hypothetical protein compare
LRK53_RS14400 -0.5 -0.6 TetR family transcriptional regulator compare
LRK53_RS09770 -0.5 -2.8 excinuclease ABC subunit UvrC compare
LRK53_RS12115 -0.5 -2.9 SurA N-terminal domain-containing protein compare
LRK53_RS14055 -0.5 -1.4 hypothetical protein compare
LRK53_RS14910 -0.5 -1.2 chemoreceptor glutamine deamidase CheD compare


Specific Phenotypes

None in this experiment

For Rhodanobacter sp000427505 FW510-R12 in no stress control experiments